mRNA_Ecto-sp6_S_contig10.461.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.461.1
Unique NamemRNA_Ecto-sp6_S_contig10.461.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.461.1 vs. uniprot
Match: D7G900_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G900_ECTSI)

HSP 1 Score: 1073 bits (2775), Expect = 0.000e+0
Identity = 553/590 (93.73%), Postives = 561/590 (95.08%), Query Frame = 1
Query:    1 MEFLLASLVMQRKVLTPSARPNFCMLMIDGNVFLPTTLRELCSRFHSSNLVPVECPIVVAASDSGVYGAGVSGQGNYSTYEGRDIELDPAQPTTCVLTVAYIPPEGGSDGGLPQPRVKTFIASHNFQNTRNDDPSVDGVAPVFTECAPADTFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRSSRATTVTNSKAASQRVYPKLTPPSSSVPLEDADTVFLVGDHHPPLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDP--------RPSIQARVLVGVALRGVHALAISAKGYEGVGPVFKIDTTADAQGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSIFQNEVCQASGESYPENISLGVSASPAELLRCRSGSGRCEDLDDEIEEEARGAPPVAVNWTFGGAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRPDRVELSGRRVQQEREQXXXXXPDGGDGDAVVTRVMVLHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL 1746
            ME L+ASLV QRKVLTPSARPNFCMLMIDGNVFL TTLRELCSRFHSSNL+PVECPIVVA SDSGVYGAGVSG+G+YSTYEGRDIELDP  PTTCVLTVAYIPPEGG DGGLPQPRVKTFIASH+FQNTRND PSVDGVAPVFTECAPA TFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRS RATTVT SK ASQRVYPKLTPPSSSVPLEDADTVFLV DHHP LMARTADWLQKLLGEDTVVLGGSTTCALCIGSQ+FPDP        RPSIQARV+VGVALRGVHALAISAKGYEGVGPVFKIDTTAD QGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSIFQ+EVCQASGESYPE ISLGVSASPAELLRCRSGSGRCEDLDDEIEEEA GAPPVAVNWTFG AVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVR D VELSGRRVQQEREQXXXXXPDGGDGDAVVTRVM LHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL
Sbjct:    1 MESLVASLVRQRKVLTPSARPNFCMLMIDGNVFLSTTLRELCSRFHSSNLIPVECPIVVAESDSGVYGAGVSGEGDYSTYEGRDIELDPPPPTTCVLTVAYIPPEGGIDGGLPQPRVKTFIASHSFQNTRNDGPSVDGVAPVFTECAPAVTFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRSIRATTVTKSKVASQRVYPKLTPPSSSVPLEDADTVFLVDDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQVFPDPDEKVGNHSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSIFQHEVCQASGESYPEKISLGVSASPAELLRCRSGSGRCEDLDDEIEEEATGAPPVAVNWTFGEAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRLDHVELSGRRVQQEREQXXXXXPDGGDGDAVVTRVMALHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL 590          
BLAST of mRNA_Ecto-sp6_S_contig10.461.1 vs. uniprot
Match: A0A6H5KTS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS4_9PHAE)

HSP 1 Score: 583 bits (1504), Expect = 7.340e-198
Identity = 297/323 (91.95%), Postives = 303/323 (93.81%), Query Frame = 1
Query:   40 VLTPSARPNFCMLMIDGNVFLPTTLRELCSRFHSSNLVPVECPIVVAASDSGVYGAGVSGQGNYSTYEGRDIELDPAQPTTCVLTVAYIPPEGGSDGGLPQPRVKTFIASHNFQNTRNDDPSVDGVAPVFTECAPADTFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRSSRATTVTNSKAASQRVYPKLTPPSSSVPLEDADTVFLVGDHHPPLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDP--------RPSIQARVLVGVALRGVHALAISAKGYEGVGPVFKIDTTADAQGGPQAEKGKL 984
            +LTPSARPNFCMLMIDGNVFL  TLRELCSRFHSSNLVPVECPIVVA SDSGVYGAGVSG+GN+STYEGRDIELDP  PTTCVLTVAYIPPEGGSDGGLPQPRVKTFIASHNFQNTRND PSVDGVAPVFTECAPA TFGTKLAAVNGENKPGGTSSSAS TNLTEPAGSSGPPQPVRRSSRATTV NSK ASQRVYPKLTPPSSSVPLEDADTVFLVGDHHP LMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDP        RPSIQARV+VGVALRGVHALAISAKGYEGVGPVFKIDTTAD QGGPQAEKG++
Sbjct:    1 MLTPSARPNFCMLMIDGNVFLSRTLRELCSRFHSSNLVPVECPIVVAESDSGVYGAGVSGEGNHSTYEGRDIELDPPPPTTCVLTVAYIPPEGGSDGGLPQPRVKTFIASHNFQNTRNDGPSVDGVAPVFTECAPAVTFGTKLAAVNGENKPGGTSSSASGTNLTEPAGSSGPPQPVRRSSRATTVANSKVASQRVYPKLTPPSSSVPLEDADTVFLVGDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDPEEKVRNYSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTADPQGGPQAEKGEV 323          
BLAST of mRNA_Ecto-sp6_S_contig10.461.1 vs. uniprot
Match: A0A6H5KT67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT67_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 9.980e-70
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 1
Query: 1063 VCQASGESYPENISLGVSASPAELLRCRSGSGRCEDLDDEIEEEARGAPPVAVNWTFGGAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRPDRVEL 1428
            VCQASGESYPE I LGVSASPAELLRCRSGSGRCEDLD+EIEEEARGAPP+AVNWTFG AVAL DDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRPD VE+
Sbjct:    2 VCQASGESYPEKIYLGVSASPAELLRCRSGSGRCEDLDEEIEEEARGAPPIAVNWTFGEAVALGDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRPDHVEV 123          
BLAST of mRNA_Ecto-sp6_S_contig10.461.1 vs. uniprot
Match: A0A6H5KRG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.790e-35
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query: 1537 MVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL 1746
            MV+FIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGS GTKSRASSVSQGL
Sbjct:    1 MVKFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSFGTKSRASSVSQGL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G900_ECTSI0.000e+093.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTS4_9PHAE7.340e-19891.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT67_9PHAE9.980e-7093.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRG6_9PHAE3.790e-3597.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:385847..391730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3229
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002450.1
Cds size1749
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.461.1prot_Ecto-sp6_S_contig10.461.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 385847..390250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.9239163-CDS-Ecto-sp6_S_contig10:385846..3858851682348698.9239163-CDS-Ecto-sp6_S_contig10:385846..385885Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 385847..385885 +
1682348698.934096-CDS-Ecto-sp6_S_contig10:386392..3865361682348698.934096-CDS-Ecto-sp6_S_contig10:386392..386536Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 386393..386536 +
1682348698.9440165-CDS-Ecto-sp6_S_contig10:386909..3875361682348698.9440165-CDS-Ecto-sp6_S_contig10:386909..387536Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 386910..387536 +
1682348698.952888-CDS-Ecto-sp6_S_contig10:387765..3879361682348698.952888-CDS-Ecto-sp6_S_contig10:387765..387936Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 387766..387936 +
1682348698.9618888-CDS-Ecto-sp6_S_contig10:388578..3886591682348698.9618888-CDS-Ecto-sp6_S_contig10:388578..388659Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 388579..388659 +
1682348698.9703531-CDS-Ecto-sp6_S_contig10:389121..3894841682348698.9703531-CDS-Ecto-sp6_S_contig10:389121..389484Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 389122..389484 +
1682348698.9778864-CDS-Ecto-sp6_S_contig10:389746..3898541682348698.9778864-CDS-Ecto-sp6_S_contig10:389746..389854Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 389747..389854 +
1682348698.985827-CDS-Ecto-sp6_S_contig10:390034..3902501682348698.985827-CDS-Ecto-sp6_S_contig10:390034..390250Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 390035..390250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.996566-UTR-Ecto-sp6_S_contig10:390250..3917301682348698.996566-UTR-Ecto-sp6_S_contig10:390250..391730Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 390251..391730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.461.1

>prot_Ecto-sp6_S_contig10.461.1 ID=prot_Ecto-sp6_S_contig10.461.1|Name=mRNA_Ecto-sp6_S_contig10.461.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=583bp
MEFLLASLVMQRKVLTPSARPNFCMLMIDGNVFLPTTLRELCSRFHSSNL
VPVECPIVVAASDSGVYGAGVSGQGNYSTYEGRDIELDPAQPTTCVLTVA
YIPPEGGSDGGLPQPRVKTFIASHNFQNTRNDDPSVDGVAPVFTECAPAD
TFGTKLAAVNGENKPGGTSSSASCTNLTEPAGSSGPPQPVRRSSRATTVT
NSKAASQRVYPKLTPPSSSVPLEDADTVFLVGDHHPPLMARTADWLQKLL
GEDTVVLGGSTTCALCIGSQMFPDPRPSIQARVLVGVALRGVHALAISAK
GYEGVGPVFKIDTTADAQGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSI
FQNEVCQASGESYPENISLGVSASPAELLRCRSGSGRCEDLDDEIEEEAR
GAPPVAVNWTFGGAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGR
RVEREGGVVLSSISFTCCVRPDRVELSGRRVQQEREQRQQQQPDGGDGDA
VVTRVMVLHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKS
RFQGYTSCAAVLCWNPGSVGTKSRASSVSQGL*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:385847..391730+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.461.1 ID=mRNA_Ecto-sp6_S_contig10.461.1|Name=mRNA_Ecto-sp6_S_contig10.461.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5884bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:385847..391730+ (Ectocarpus species6 EcLAC_371)
ATGGAATTTTTGTTGGCGTCCCTCGTCATGCAAAGAAAGGTGTGTCAGGA AGGGAGTGTTTGTCACAGCGCACAGAGTTGATCGCTGCTCACACTCACAC ATGACTCAACTCTAGACTATGTACGTCTGATCCAAGTACCGTCGAACCCT CTCTCTCGCTTCTCCCGCGTGGACGACCGTAGCATTCTCTTCCCAGCCAT ACCGAGACGGTCGGTCTTTTAGCACTCATGTCCTGTATCTATTGAAGCTG GTCTCTCTTGTGCCTGCTTCTATTAACATATCGAGGTTACTACAGAGCGC ACCAGGTGTACTTCAATCTTCTATGCGGCGTAATTAAATGCCATTCCCCC GTGTAATTATATGTATCCATAGCACAATTTACAGCAGTACAGATGTGTGT GAAGTTACAGCAGTAGCGTGGCAGAGGATGGTAGTGAGAGCAGTACGTAT GTCAACTTTTTCCAATCCTCAAACCTCTTGACCACGCGCACTCGTTCGTG GCTTTTGCGTTGAACCGCTTTCTGTGCCCTGCGATACTGCTGTCAGGTGC TCACGCCGTCGGCAAGGCCTAATTTCTGCATGCTGATGATCGATGGCAAC GTGTTTCTTCCAACAACCCTTCGCGAACTGTGCTCGAGGTTTCACTCGTC CAACCTCGTCCCGGTGGAGTGCCCAATCGTTGTGGCGGCGGTGAGCGCGA GAAAGAACAATCGTTTTATCGTAAGGCGGGCTCTACAATAGTTTCGTGAC GAAGGCAGTTGAGGACACGAAAGAAGACTGACTCCCCGTATGGGACACTT CGACGCCAAACATTTCAAGCGCGTTTCGAACTCAGGAAACAGCTGTATCG TTACGTGAGCCCAACAACCCTCCAGCACTTCGGTATTTCAAATGACGGAG GAGTTCTGGCACTGGTATTGTTGGACGTTCATGCCTGAGTTTGCAGGGAA CCGCGAACAACCAAGGGAACCTACATAACCTTGCTCCGGTCAAACGTGCA TGTACGTTGTTCGTGCCGGACGTGATTGCCTCTACTCTTTCCCGCCGTCA CGGGTGACCACAGAGCGATTCGGGCGTGTACGGAGCAGGAGTTTCCGGTC AAGGTAACTACTCGACTTACGAAGGCCGGGACATCGAGCTCGATCCCGCA CAACCCACCACGTGCGTGCTCACCGTTGCATATATCCCACCGGAGGGGGG TAGCGACGGCGGCCTACCGCAGCCTCGAGTTAAGACCTTCATCGCCAGCC ACAATTTCCAGAACACACGAAATGACGACCCGTCCGTGGACGGTGTCGCA CCCGTTTTCACGGAGTGCGCTCCCGCCGATACCTTCGGCACCAAACTGGC AGCAGTGAACGGGGAGAACAAGCCTGGCGGCACTTCTAGCTCGGCATCTT GCACTAATCTCACTGAACCCGCGGGGTCAAGCGGGCCACCCCAGCCGGTG AGGAGGTCGAGCCGGGCGACGACCGTGACTAATTCGAAGGCGGCATCGCA GCGCGTGTACCCGAAGCTAACACCGCCATCATCCAGCGTCCCTCTAGAGG ACGCTGACACCGTTTTTCTCGTGGGCGATCACCACCCGCCGTTGATGGCG AGAACGGCGGACTGGCTCCAGAAGTTGCTCGGAGAAGATACGGTGGTCCT TGGTGGCAGCACGACATGCGCTTTGTGTATTGGCAGCCAGGTAAGGCAAA CACCTCGAGTGCTGTTCTCGCCGCCCAGAGCCACGCAGGTCGAGTTGAAC GCACGGACAAGTCTCTTCTGATATTCCCGCGTTATGCTCCTCGACAACCA GCAGTCACCCGAACAAAAATATTGTTGGCAACGCGTGGGACAGCTCCTCG ATGCGGCACATGCTTCTCTTCCAAACCCAATCAATACTATGATATGGTGC GTCACCCCCCCCTATCCAGATGTTTCCCGACCCGCGACCAAGCATCCAAG CTCGCGTTCTGGTCGGCGTTGCTCTGCGAGGAGTTCACGCCCTGGCCATT TCAGCGAAAGGCTACGAAGGTGTCGGGCCGGTATTTAAGATAGACACCAC GGCTGACGCTCAAGGAGGCCCGCAGGCAGAGAAGGGCAAGGTGCGGAAGA GGAGGATTAGTTTGGGCACCGTCGGTACGATCAGAGTTGTAGTCCGGTGT GACGACTTTGGCCTAGTTTTCGCCTGAACGGGATTTATTCGGCGACGGGA TGCGCTGGCTGACCTTGACACCGGCATGTCCACCATTTATCGTGTTTTTC ATACGTGTAAACCGATAAATATGTCAAGAAGATCCCAGATCCCTGCCGGA AGAGACTAGACCTCTCTCTGGGTAGTCGCATACGTCCACCACCACGTCTC CTTCGAGCAAAGAATCAATAGGATCGGCTATAGTTCTGTCCTTTGCCGAA TAGAGGGTTTTCTTTGTTGAGTGTTGAGCTGACCATACGACGAGTGCTCA CACAGCGACAAAGCCACACCCTACAGGCTACCTTGGGGGAAGTTGTCCCT CATTTTATATCCAACGCAGCAGCATGTCCAGAAAAATAAAAATGGCCGTA GGATTAAAACGGATGACGTGCACATGTGGCATTGGATCCGTCGTGGCTTG TTCTGCCTTGACGAACCCTACCTTTACTCCAATTTCCAGGGATATTTTCG GCCTACCCGCCCCCGCAAAACTCCTCATCGCCGTCTTTCCTCAACGGTGT TTGTTGCGTATCTCGTTTCCCGCGGTTTCCAGCTGCTACGAGATGTGACG GTCGTGTCATCGGAGGGGGTCGCTGTTCGCAAAAGTACCGCCCTATCGAT CTTCCAGAACGAGGTGAGGTGAAGCGAAGACAAAGCTGGCGCGATTGTTC AGTCGGCTTCTCTTGGGGAAACAAGAGGCGGCACTTCTGAAAACGAGATA CGAAAGAATGCTCGGTCCTTGGCGGCTGCTTTTTAAATTTTCCACACTCC TCGGTTTCCTTCGGACCATTAGTTAGTATCGATGCGTGCGGAGAGGACGG AAGAGTAAGTACTAGGTACTTGTAGATAGGGCTTTGAAACTGTGCGGAAG GTTAACTTCTTAGAACAGGGCATCGATACGTGATGCACGCCCGGTCAACT GCTCGCTCAACACTCAGGATTCTCGGTGAACCATGTCTTTGCATGCAGGT TGCAGGCACCAGGAACTACAATACTGTGGTGCACTCTGAACGCCACGATC ACCATCCGGAATGCTTCCGTGACTGCTTGATTTTCACCACCTCCCTGATT AGTCTCACTCTGCGAACGCGTTTAGGTTTGCCAAGCCTCAGGCGAAAGCT ACCCGGAAAATATTTCTCTAGGGGTAAGCGCTTCGCCGGCCGAACTGCTC CGCTGCCGATCCGGCTCGGGGCGTTGCGAGGATCTGGATGATGAGATCGA GGAAGAAGCGAGAGGAGCGCCGCCGGTCGCCGTGAACTGGACCTTCGGAG GGGCCGTCGCGCTCGACGACGACGTGACGCCCGGGCAGCACGCGCGCTTC CTGCGCAGCACGAACCGGCTCGTTCTCGAGGACGCCGAGGCTGCGTACCA CGCGTGCGGGCGGCGCGTCGAGAGGGAAGGGGGCGTCGTGCTGTCCTCCA TCAGCTTCACGTGCTGCGTTCGGCCCGACCGCGTGGAGGTACATAGTGTA CCGTGCAATCGTGGCGGGCTGGACCCTCTGCACTCTCATGTGTAGAGTTG TTGTGAGTGGGTGTCGCTTTGGGGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGACCTTCTTCGCCGGTGTCGCGGAAAGTATG GGAGGCATTCTTCCTCACCTGCCTTGTTCAGGATCGATATACTGTACCCT GATGCAAGTTCCCTTGTTTATTCACAATCTACCGATGCCTTTGACAGCAG TTGTCTGGTCGACGAGTGCAGCAAGAACGCGAGCAGCGGCAACAGCAGCA GCCTGATGGCGGGGACGGGGATGCGGTGGTAACCCGCGTCATGGTCCTCC ACCAACAGGTATGTCGTGCGATGCATTTACATGCCACGTAATACCGGTAA GAGACGATGTTCCTGTGCTTGTGGGGATATTTGAAATTCGCCGTCCCGCA GAAGGGCACAACAAGTTCCCCAAGCTGATTCTTGCTGTACCCACCCTTTG GTGGCCCTGGCGCACCTGCCTCGTTTCTCCACGAAAAGGAGATGGTCAGA TTCATCAAGACTCTTAATGCCCCTGCGGCCGGAGTGTTCTGCGATGCCGA GTTCGGGCCTGTGGCAGCCATGTCGGCAGGAATCCACCCCAAGACCGCCA AGTCTCGATTTCAGGGTTACACCTCCTGCGCCGCCGTGCTGTGCTGGAAC CCTGGTTCGGTCGGAACCAAGTCCCGTGCCAGTAGTGTCAGCCAGGGTTT GTAGTCTAGTCGCCCATTCAAAGGCTTGTACGGTGTCTGCATCGCTGCGA GTGCGAGAAAATACTGGCAGGCGCACTGCTTACGGGGGGGAAGCCTGTTA TCACAGCCATCCCTTGTTGTTTTCCGGAGGGAACAACTGCTTCACCAGCG TTTCATCGCGCACAGGGGAAAGGGGGGAAGGCTTACTTTTCTTCGAGCGC AGTCGAACACCACAAATGTGTATACGAGCGATTTTAAGCAGAAGTAGTAG TGGAAAATGGGCCGGCCCTGACAGCAGAGCCCAATAGCAGCGATCAAATG CTAGCGTTTGTGACGGTTCGTTTGTGTGTTTCGTGAGTGAGCATGGACCG CTCTAACAGGCTGACCGCTTTAAGACGCCACTTTGTGTTGGCGGGATAAA CAACATTTCTGCATGTATGTTCGTTTTCTTGGTCAAGGATAGCCGTCACC GGCAACCTGTCGTTTCGTTACTCTTACGCCTTTCGGTGTTGTATTGGACG TTTTTTGGACGCACCAGTCGGGGACACGGAAGGAAAAGACAACACTGGAG GTGCGTAGGTTAGGAGTTATTTTCTTTGTTTTTGCGTCTGCGGTGCTTGT GTATCGCGAGAGTGATGCAGCAGTCGCTTGCCCTCGTCGACCTTGAAGTC GAATTTCGTGGACACATGAAATATTCGTTCGCAATCCACATGTATACAAT ATGTTTGGAGGTGATGAGGAATGTTCGCGCTCCGACAACCTCGTGCGAGC ACTCCGTGTGATGTGAAGATAGGGAAGCAGCAAGCTGTGCAGAAAAACTC CTTGCTAGCAGCAAATTGTTTTGCTTGATTTGACTTGATTTCAATAACGG TTCAAATGCTGCTTGACGCGATTTTTTCTTCTTTGACTTGATTTCAAGGT TGAGGGAGACAAAAATGATAGGTTTGTGGTATGTTGACAAATGGCTGTTT TTCTGTCACATCACAACCCCGAAAACAAATGTCGGTTTTGGATAGTGCTG ACAAACACCCCAATTTGCAACTGGGGAAATTCGAAATTCATGCGTTGGAT ATTGCTCTGTACGTATCAAAGTCACTTCCAACTCTTTTGGGTGGGGCTGA GGACTATGGAAAGGTATGTTCAGGCGAGTAGCCAACAAACCGTGTCGGTA CGTAGGCCAGCTAGGCCCAGGCTTTGGGGGTTACCCTGCCATGAGAAGGA CCCCATGCTGTACATGGGTGCTGTAAGAATGTGTACAGACGAATCCAAGC TACTCTTAGGTGTGCGTAGTCATGGTGTTCTACGCAGAGAGCGGTGCATG CGAGGCCGTTGGGAAGGACCTCCGATGCAACACGGCAAAACCCAATCCAA ACTAATAAGGCTTCAGTCGGACAACGAGATGGCCGAAGGTGCCAGCACCT CGAGGGTCTCAGAAACTAGAATTGTGATAGCAACTCGACGAGTATCGTCG CTTTGCCTGTCTGAAGCTTTTCAGTGTTTTAGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:385847..391730+

>mRNA_Ecto-sp6_S_contig10.461.1 ID=mRNA_Ecto-sp6_S_contig10.461.1|Name=mRNA_Ecto-sp6_S_contig10.461.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1749bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:385847..391730+ (Ectocarpus species6 EcLAC_371)
ATGGAATTTTTGTTGGCGTCCCTCGTCATGCAAAGAAAGGTGCTCACGCC
GTCGGCAAGGCCTAATTTCTGCATGCTGATGATCGATGGCAACGTGTTTC
TTCCAACAACCCTTCGCGAACTGTGCTCGAGGTTTCACTCGTCCAACCTC
GTCCCGGTGGAGTGCCCAATCGTTGTGGCGGCGAGCGATTCGGGCGTGTA
CGGAGCAGGAGTTTCCGGTCAAGGTAACTACTCGACTTACGAAGGCCGGG
ACATCGAGCTCGATCCCGCACAACCCACCACGTGCGTGCTCACCGTTGCA
TATATCCCACCGGAGGGGGGTAGCGACGGCGGCCTACCGCAGCCTCGAGT
TAAGACCTTCATCGCCAGCCACAATTTCCAGAACACACGAAATGACGACC
CGTCCGTGGACGGTGTCGCACCCGTTTTCACGGAGTGCGCTCCCGCCGAT
ACCTTCGGCACCAAACTGGCAGCAGTGAACGGGGAGAACAAGCCTGGCGG
CACTTCTAGCTCGGCATCTTGCACTAATCTCACTGAACCCGCGGGGTCAA
GCGGGCCACCCCAGCCGGTGAGGAGGTCGAGCCGGGCGACGACCGTGACT
AATTCGAAGGCGGCATCGCAGCGCGTGTACCCGAAGCTAACACCGCCATC
ATCCAGCGTCCCTCTAGAGGACGCTGACACCGTTTTTCTCGTGGGCGATC
ACCACCCGCCGTTGATGGCGAGAACGGCGGACTGGCTCCAGAAGTTGCTC
GGAGAAGATACGGTGGTCCTTGGTGGCAGCACGACATGCGCTTTGTGTAT
TGGCAGCCAGATGTTTCCCGACCCGCGACCAAGCATCCAAGCTCGCGTTC
TGGTCGGCGTTGCTCTGCGAGGAGTTCACGCCCTGGCCATTTCAGCGAAA
GGCTACGAAGGTGTCGGGCCGGTATTTAAGATAGACACCACGGCTGACGC
TCAAGGAGGCCCGCAGGCAGAGAAGGGCAAGCTGCTACGAGATGTGACGG
TCGTGTCATCGGAGGGGGTCGCTGTTCGCAAAAGTACCGCCCTATCGATC
TTCCAGAACGAGGTTTGCCAAGCCTCAGGCGAAAGCTACCCGGAAAATAT
TTCTCTAGGGGTAAGCGCTTCGCCGGCCGAACTGCTCCGCTGCCGATCCG
GCTCGGGGCGTTGCGAGGATCTGGATGATGAGATCGAGGAAGAAGCGAGA
GGAGCGCCGCCGGTCGCCGTGAACTGGACCTTCGGAGGGGCCGTCGCGCT
CGACGACGACGTGACGCCCGGGCAGCACGCGCGCTTCCTGCGCAGCACGA
ACCGGCTCGTTCTCGAGGACGCCGAGGCTGCGTACCACGCGTGCGGGCGG
CGCGTCGAGAGGGAAGGGGGCGTCGTGCTGTCCTCCATCAGCTTCACGTG
CTGCGTTCGGCCCGACCGCGTGGAGTTGTCTGGTCGACGAGTGCAGCAAG
AACGCGAGCAGCGGCAACAGCAGCAGCCTGATGGCGGGGACGGGGATGCG
GTGGTAACCCGCGTCATGGTCCTCCACCAACAGGAGATGGTCAGATTCAT
CAAGACTCTTAATGCCCCTGCGGCCGGAGTGTTCTGCGATGCCGAGTTCG
GGCCTGTGGCAGCCATGTCGGCAGGAATCCACCCCAAGACCGCCAAGTCT
CGATTTCAGGGTTACACCTCCTGCGCCGCCGTGCTGTGCTGGAACCCTGG
TTCGGTCGGAACCAAGTCCCGTGCCAGTAGTGTCAGCCAGGGTTTGTAG
back to top