mRNA_Ecto-sp6_S_contig10.460.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.460.1
Unique NamemRNA_Ecto-sp6_S_contig10.460.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.460.1 vs. uniprot
Match: D7G901_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G901_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.100e-43
Identity = 70/76 (92.11%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 MPDSAPPVCENCKPGKATDEREAAIEKMDCQASAATYDVVAACMEAHRGNVADCRTEWNDFRECHKESRRRSTADA 228
            M DSAPPVCENCKPGKATDEREAAIEKMDCQA   TYDVVAACMEAHRGNVADCRTEWNDFRECHKESR RST DA
Sbjct:    1 MSDSAPPVCENCKPGKATDEREAAIEKMDCQA---TYDVVAACMEAHRGNVADCRTEWNDFRECHKESRGRSTGDA 73
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BLAST of mRNA_Ecto-sp6_S_contig10.460.1 vs. uniprot
Match: A0A6H5KSY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY6_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.760e-14
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 3 
Query:  105 YVRCCRCLHGGSQRECGGLSNGMERLQRVP 194
            YVRCCRCLHGGSQRECGGLSNGMERLQ VP
Sbjct:   31 YVRCCRCLHGGSQRECGGLSNGMERLQSVP 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G901_ECTSI3.100e-4392.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSY6_9PHAE5.760e-1496.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:384460..385399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.8
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog2880.D7G901
Model size231
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CKQX@1,2SG1M@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002440.1
Cds size231
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.8877816-CDS-Ecto-sp6_S_contig10:384459..3845881682348698.8877816-CDS-Ecto-sp6_S_contig10:384459..384588Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 384460..384588 -
1682348698.8979456-CDS-Ecto-sp6_S_contig10:385297..3853991682348698.8979456-CDS-Ecto-sp6_S_contig10:385297..385399Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 385298..385399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.460.1prot_Ecto-sp6_S_contig10.460.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 384460..385399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.460.1

>prot_Ecto-sp6_S_contig10.460.1 ID=prot_Ecto-sp6_S_contig10.460.1|Name=mRNA_Ecto-sp6_S_contig10.460.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=77bp
MPDSAPPVCENCKPGKATDEREAAIEKMDCQASAATYDVVAACMEAHRGN
VADCRTEWNDFRECHKESRRRSTADA*
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mRNA from alignment at Ecto-sp6_S_contig10:384460..385399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.460.1 ID=mRNA_Ecto-sp6_S_contig10.460.1|Name=mRNA_Ecto-sp6_S_contig10.460.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=940bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:384460..385399- (Ectocarpus species6 EcLAC_371)
ATGCCGGACTCAGCACCCCCCGTTTGCGAGAATTGTAAACCCGGCAAGGC
AACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAGTG
CGGTCAGGAGTTTTCTCAGAGGGAGAGAGAGCTTTTGTAGCCGCCCAAGA
CGTAGTCACTCATCACGTAACCATGCAAAACAAACATCTCCGAAGCAGTA
CCGTATAGTCGATGCGGAAAATATGTGAGAGGTATCTGATATTTCCGTGC
GGTTGGCGTCCCAACTGTTGGACAAACAAGATTTTCGTGCAACCAGCAGA
ACTGCAACTAACTTCGGCCCCCGGGGTTGACCCGCGAAAGCGCCCTCATT
TTGTCTTGTTGTAAAGACACAACGCCTTCGTCTCTGATCAGTTTTCCTGT
GTTGTGTTGTTTTGGGGGGTGGTGGTGGTGGTGGTATTGGCGGGTGGATG
GGTTGGCGGTCCGCGATTATTTTTGTTTTTTCCCTCCCATTTCGGTACGC
ATGCGACCATCGCTCCAATTTCTACCGAACGAGCGACCTTGCCCCTCCGA
CTGAAGATTATTTCCACTTTTTTAACTATCTTGTCACTACGTTGTCCATG
GGACGTCGTTAGACCCCCAAACGTTGTGCGTCGAGACACAGCAGTCGGCC
AATGCGCGGAACCAGATGCTTCCACATGGACGAAAAAACGTACGTTTCCC
GCAGGACGACCAGAGTCATGCTTCCAACGCGTTGCTGAGATAAGAAAATC
CACGCGTTCTGATAGATATTTGATGAACTTTTGGGCGCCTCACCTTGTCC
GTATTTGCCAGGCTACGTACGATGTTGTCGCTGCTTGCATGGAGGCTCAC
AGAGGGAATGTGGCGGATTGTCGAACGGAATGGAACGACTTCAGAGAGTG
CCATAAAGAGTCACGGAGAAGATCAACGGCAGACGCATAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:384460..385399-

>mRNA_Ecto-sp6_S_contig10.460.1 ID=mRNA_Ecto-sp6_S_contig10.460.1|Name=mRNA_Ecto-sp6_S_contig10.460.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:384460..385399- (Ectocarpus species6 EcLAC_371)
ATGCCGGACTCAGCACCCCCCGTTTGCGAGAATTGTAAACCCGGCAAGGC
AACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAGTG
CGGCTACGTACGATGTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGAAT
GTGGCGGATTGTCGAACGGAATGGAACGACTTCAGAGAGTGCCATAAAGA
GTCACGGAGAAGATCAACGGCAGACGCATAA
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