mRNA_Ecto-sp6_S_contig10.457.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.457.1
Unique NamemRNA_Ecto-sp6_S_contig10.457.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.457.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI)

HSP 1 Score: 494 bits (1273), Expect = 2.500e-168
Identity = 261/267 (97.75%), Postives = 263/267 (98.50%), Query Frame = 3 
Query:  210 MLSSPSAGGMRLAGNYAQRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGEPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSKLQSMSVLAEGPLDEEEEEAAEEGTEASKRITALSILESLSQTPAAPVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLPEAGSSNMS 1010
            MLSSPSAGGMRLAGNYA RGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAG+PDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGS+LQSMSVLAEG LDEEEEEAAEEG EASKRITALSILESLSQTPAAPVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSL EAGSSNMS
Sbjct:    1 MLSSPSAGGMRLAGNYAHRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANRRGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSRLQSMSVLAEGSLDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSRVDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEAGSSNMS 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G904_ECTSI2.500e-16897.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:359326..364642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2334
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002420.1
Cds size903
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.457.1prot_Ecto-sp6_S_contig10.457.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 360647..363299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.389018-UTR-Ecto-sp6_S_contig10:359325..3606461682348698.389018-UTR-Ecto-sp6_S_contig10:359325..360646Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 359326..360646 -
1682348698.453741-UTR-Ecto-sp6_S_contig10:363299..3633331682348698.453741-UTR-Ecto-sp6_S_contig10:363299..363333Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 363300..363333 -
1682348698.466357-UTR-Ecto-sp6_S_contig10:364566..3646421682348698.466357-UTR-Ecto-sp6_S_contig10:364566..364642Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 364567..364642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.403677-CDS-Ecto-sp6_S_contig10:360646..3607061682348698.403677-CDS-Ecto-sp6_S_contig10:360646..360706Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 360647..360706 -
1682348698.4124691-CDS-Ecto-sp6_S_contig10:361031..3613371682348698.4124691-CDS-Ecto-sp6_S_contig10:361031..361337Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 361032..361337 -
1682348698.4201093-CDS-Ecto-sp6_S_contig10:361851..3619141682348698.4201093-CDS-Ecto-sp6_S_contig10:361851..361914Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 361852..361914 -
1682348698.427818-CDS-Ecto-sp6_S_contig10:362326..3626341682348698.427818-CDS-Ecto-sp6_S_contig10:362326..362634Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 362327..362634 -
1682348698.436895-CDS-Ecto-sp6_S_contig10:363133..3632991682348698.436895-CDS-Ecto-sp6_S_contig10:363133..363299Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 363134..363299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.457.1

>prot_Ecto-sp6_S_contig10.457.1 ID=prot_Ecto-sp6_S_contig10.457.1|Name=mRNA_Ecto-sp6_S_contig10.457.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=301bp
MAYISAGAAGRDKDSKQSAEGAVGGDKESQLSAMLSSPSAGGMRLAGNYA
QRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGEPDPEGGSGGNPANR
RGLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDL
PPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSKL
QSMSVLAEGPLDEEEEEAAEEGTEASKRITALSILESLSQTPAAPVDGSR
VDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLPEAGSSNMS
*
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mRNA from alignment at Ecto-sp6_S_contig10:359326..364642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.457.1 ID=mRNA_Ecto-sp6_S_contig10.457.1|Name=mRNA_Ecto-sp6_S_contig10.457.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5317bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:359326..364642- (Ectocarpus species6 EcLAC_371)
CCACGACCGGAGGCAAGTCGCACGTTTAACGAAGGAACGGGAGATCGAGG
TGGCTTCTTCGTGCAGGTCGCGGACGGTGAGGCAGGGAGTTCGTGCGGGG
TTTGACCCTGATTTTATTGCCCGTGTTGTATCTGCTACATACACCATCTC
GGAGAGGTTGAAACTGAAGACCCTGCTGTGAGGGCGCGTGTTGCCGTCTG
TTGATGGCATGAGACTTATGGCAGAGGGATGTTGCAGTTCCACAACCTTG
AAACGTTCATTGTGTGACGAGTGGGGAGAACAGATACCGGTAAGCTTACA
CCGCAGCGGCTACTGCAGCGGTGTTGTCCGTCCGCCCTCGAAGTAAATAT
GTGGGTGAAACTCGTAAACTTCTTTTCTCCTTCTCTGCGTGACGCAACTA
TGGTGTTCGTTGTTTGTTCAGAAGTAGTATCAAGGGTCGACGGAGTCTTC
TGGATCCAGGGCGATAAATGAAAGATGTGGGGCGGGTCGGGAGGTTTAGT
TTCGAGATGGTAGTCGAACGCCCCTTTATCCAAGGCCGCGCGTTCAACTT
TCATTCTGGTGGCAAGTAGCGACTTCGACTCGTCAACTGCGGTATGCATG
CATAGGAAACACGCGTCGACATTGTTGTGAGAGAACAAAAAAAGGCGCAA
GAGGTGGATAGCCTACTGCTGCAGCTTTCTCGTTGATGCTCGGGACAGGC
GACGCGTTGCCCAACAGGGGTAGAAAGGAGAGGGAGGGCCTACAGCCTAC
AGCCTCACCCACACTCTCCGACAGGCATCAGTTCTGAACACATGCAGCGG
TTGTTGTGGTCCGCATTCTTGGAACCGGTACTCGTGGCACAGCAGCAGTG
GTAATGCTATATTGTGCTAGGAAAAGAAATACTTCACGTTGTATAGTATG
CGTTAGTGCAGCAGTAGTCTCTGCTACGCAGGCGGGAACGAAGACCAGCA
GCAACCATTGCAGTGTGAGACGGCTCTAATCATACACCCGGTAGAGTGGA
ATGTGTTGTCTACTACTTGGAGGTAAACCAAATATTCCAGGGATGCCTAC
AAAAATTGATCAAGATGTTTTTCCGTAACTGCAATGTATATATGAGGTTT
TTTCCGTGGGCAGATTTTTTGCTGCATGTACACTGCACACGTGTCCGATG
CGTGTCTCAAAACGGTCGTAGGTCCCAATTTTCGTCTCAACAACACTTTA
TCGAAAGTACCGGCGTCCGTTTTCGCTGTGCGAACTGCATGCATGCCGCG
CTCGCGTCGGCCAATGTACACCACCAGTATTGACACAACGCCGGAATCGC
CTGTCCCAGGTGCGCTTGGCTGAACGAGTATTGCCGGGCATACATGGCAT
ATATCTCCGCAGGGGCAGCCGGCCGTGACAAAGACTCCAAACAATCAGCC
GAAGGGGCAGTCGGCGGTGACAAAGAATCCCAACTTTCAGCTATGCTGTC
TAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGGAACTATGCCCAACGTG
GCTCTCCCGGTGAGGGATGTCTGCTAAATTTGGTTGGTTGGCGAATTTTC
TTTTTGTTTGTTCGTCCTGGTTTGTTTCCGCAGGTGTTGGCAAGCGTAGT
CCTTCATGTATCATGTGTTGACAAGATCCTGAACACTGCATCTGTGCTTG
AGGTACCGCACCTGTCGTTGAGCAGACGCGTGTATTTTTGCGCACAGGCA
TGCGTCGAGATTCCGTCGCCAAGTATGCTGGATCATTGAGTTGTGCTGCC
TTCATTTCTTTGCCCTGTGTTAGCTATGCAATCCATCGATTGTGCGCGTG
TTTTGTATGTGCAAGCGTGAGTTCTGAAGGGGATCATCACGGCTAACAGC
ATGTGAGCGGCGACCACAGCAGAAAGGGGAAGAATTTTTTTCGCGACCGT
AGGTTGCTAGGTCTCCTATAATCCCCGCAAGGATTTGTATCAATATCATG
CAAACATTGAGCCTTGTGACCGCTTGTGCTGTCTGAACTTCGTTTGTCTA
TTCTCCAGGTGTAGTTCGGCGGACAGCTAGTAGACCCATCTCCATCATTC
GCTCTACATCAGTCCCAGCTCAGCTCCAAGATAGAACGCAGGCCGGTGAA
CCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAGGAGGGGCCT
TCACACTCGCGACAGGAGTCTTCAGCACGATTTCAATAGCGGTGCGGCAG
GAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAGGCTCCCCTG
CTGGCGGGGTCCCTCCCCCCGTCGCGTTTTTTGGATGACTTGCCACCCCT
CAGTCTCGGGCCGCAGGTGTGTTTGTAGGACACGTGACGCAATTTATTTT
CGCCAGGAACAGAGCGTAACAACAGTGTCTTGGTGCAAAGGATTGCGGGG
AGAACGTAGCCTGTTTATTTTTGTACCCTTGATGCGACTTTCTACGAGAC
CCACAATCGACACATAGCTTGTCTGTACAAGGAGTTTTGAAGAACTTCTG
GTTTTGCATGAATGACTTGCTTTCCCCCATTTTCGTCATTCCATGTGACG
TACTCATAGGGGTAAGAAGTGCCAGTAATCTGCTCTCCTTTGGTGGGCCT
GCCAGGTCTAACCTCTGATTGCTAGATGCATGCGTTCTCCGTAGTCCGGC
CCATGGACATCGCTTAACACGCAACGGTCCGCTGTTTGCATCACCCATCC
CGGGGACCTTGACCCTTATCTGGCGCAGGCTGACAATTCGTTTGACTCCG
ATTGTGGCGCGCTATCGACGTCGTTGAAGGCAAACCGCCTGGTAAGTGGT
GTCTTGTCTACCCTCCCCGGCTTTTCCGAATCAAATCGATACGTTCCATG
CGCAAGATGCACAGCAATCGTCCACAATTTAGGGACACCCTCTCTGTTGG
AAGCTCCCTGCTTTCAGTTAGAAGTACATGTTTTCGCGAGCAGGACGGGT
GCGAATGTTGTGGCACACCCCGAGAGGGCTACGTGATTATAGATATTGCG
CCTGTTTGTATCAGACACCCCGCCACTGAGCACCGAGACGTTCGGCAACA
GATTGGTAGCTCCTGTGTTTGGTGTTTGTGGCCACCCCGAAGTAGCACGT
TGTCACTTTTCTCGTGCGAGCAAGTATTGTTGTCAGCCTGCCGGCTCCAA
GATGCCCCAGTGCATTCTTCCTGCGGTTGGCGCTGCCCAAGACTGTCGGC
TACATCGTTTCAATGTTTTTTCTAAATTGTGTTTTCCTCCACACCGCCCA
CATCCCTCGCGTTTTCGGTCGTGTCGGTGTTGTTGATTGTCGTGACAAAA
CGCAGTACGCCACGTCTTGTCCGGCAAACATCGGAGCGCATTTTGGCCGC
CCGCCAGGATCGAAACTCCAGTCCATGTCTGTTCTCGCAGAGGGGCCGTT
AGATGAGGAGGAGGAAGAGGCGGCGGAGGAAGGGACAGAGGCGTCTAAGA
GGATCACGGCCCTGTCCATTCTAGAGTCTTTGTCGCAAACGCCCGCCGCT
CCCGTGGACGGGTCGAGAGTGGACGCAGAATCTGTAGAATCGTTGACGAA
CATCGTAGATGAGCGACTGCCCATCGAAGACGACGTGTTCGAGCTGGATG
GACTCGAAGGGGTGAGAACGAACTTGGCAGCAGTGTTAAGTGCAGCAGTT
GGCTCTGACTTGAAAAGAGAGTACATACGCGTATTGTTCAAAACTGGCGT
GCATTGGTGAGGGCATGTCGAATCGGCCAGTTCAGACCTCCTATGAAAGT
AGTACCTGCTTTCTTGTTGATCACCCCCCCCTGTTCGCAACATCATGATG
TGCTACACGCCAGCTACGCACGGCACGCCAGTGAATAGCATGCATTCCTT
TCGTGGATGACGCATACTCGTACTCAGCAGAGTATGATGTTTGTATTGTT
TCATCAACCTCAACCCACGCTCTTGTTTATTCGCAGGTGAACGAGGAGCT
GGAGGCTCTTTCTCTCCCCGAAGCAGGCAGCAGCAACATGTCTTAGATCG
CTCGCTTTCCCCCAACGGCATGGAGCCTGCCTTAGCAGGATAAGGGCAGT
CTCGGGACTCTGACACTCCGCTTCCCGTTACATGTCGCAGCGTTGCTTAC
CATCCTTGGGGCAACAACTGTACATCAAATCGAGCTCTAGAGCTGGCCAG
GTCCGCGTTAGGGTGTCCCTAGCTGGCACAGCGCCCAATGTCATAGCTTG
GCGCTGGAGCCCGACGTGTGGGTCTGGATTGATCGACTGTGTTGGTTTGG
ACAACGACTGAGCTACCCGTTACTTGGTGCTACAAGCGTATTTTTGTGTT
TACACACAGTAGGGTAGGACACGGTAAGTTTGGTGCAAGTGGTTGAAAGT
TTGCGGTTCCTTTTTTTGGTCTTATTTGTGTGCATAGTTCCCATTTGTTG
CGCGACGAAGCGTAGGATAGAGGGTGCTTGACAGATGCGCATTTCGTTTG
GTTGTTGACAAGATAGATAAATTACCATGAATTTGCAGGTATCAAAAGAT
GGTTGGTCTTGTACAAAAGGAGCACAGTCGTAGGTAGATGCAGCTGTAGG
CTGTGGTCACAGCAGTTGTTGCCATGATATGTATATGTGAAAGTGTTCTT
TTTTATGCGGGAGGATGCATGAAGATGCATGCACACAACCCCCTAAATGG
GGCGATTGTTGCAACCCCCAGGCGTTAATCTCGGATGTTCTCAAGTGCTT
TCTCTGGAGTTTTGGATAGAATGTCATGTTCGCTCGGATGCGTAGCACGT
TCCCCGAGAGTGTATTCCTAGGGGCGTTGTAGTGATACAAATCCTTCCGT
TGACTCATCGCAAGGATACGGTACCACAGAAATGATCACCACCGTTCCTT
GGCCTCCTTTACGGTGTCAGTTTCCGTTATAAAACCGAGTGATATTTCTT
CAATCGACTTTGCGAAGTTCTTGGATTTTCGAGCGGGGTGGATAGAAGCG
TAGCTGCTGCGATGCATGCACCCCTTGGTGCGAGGTCGGTGCCAAGATCT
TCGTCGGTTTTTGAGAAAATCGCTTTCTTGGTGGGCCTCATCTAGAATAC
AACTTTTTTTCTTCTTCTTTTCTTCAGTTTCGCAACCCCCGCGGCTGAGC
AGCCATAGCATCACGGTTTCACGTAACCTGTGCGCGCCCGTCTGCAAGCT
TCACCTTCACTAGTTGGCTCATGTTGTAATTTGTTTGGGTGTGGAAGCTC
ATGGAGCCAAGGCGTCCACACAATCAAAAACATGTTTGTATGCATGCATG
ATCTTTCTTCCGAGCAAAGCGTCTGCCAGATTTTAAACACCACCCATGGT
TTGTGAGTCCCAAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:359326..364642-

>mRNA_Ecto-sp6_S_contig10.457.1 ID=mRNA_Ecto-sp6_S_contig10.457.1|Name=mRNA_Ecto-sp6_S_contig10.457.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:359326..364642- (Ectocarpus species6 EcLAC_371)
ATGGCATATATCTCCGCAGGGGCAGCCGGCCGTGACAAAGACTCCAAACA
ATCAGCCGAAGGGGCAGTCGGCGGTGACAAAGAATCCCAACTTTCAGCTA
TGCTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGGAACTATGCC
CAACGTGGCTCTCCCGGTGTAGTTCGGCGGACAGCTAGTAGACCCATCTC
CATCATTCGCTCTACATCAGTCCCAGCTCAGCTCCAAGATAGAACGCAGG
CCGGTGAACCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAGG
AGGGGCCTTCACACTCGCGACAGGAGTCTTCAGCACGATTTCAATAGCGG
TGCGGCAGGAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAGG
CTCCCCTGCTGGCGGGGTCCCTCCCCCCGTCGCGTTTTTTGGATGACTTG
CCACCCCTCAGTCTCGGGCCGCAGGCTGACAATTCGTTTGACTCCGATTG
TGGCGCGCTATCGACGTCGTTGAAGGCAAACCGCCTGTACGCCACGTCTT
GTCCGGCAAACATCGGAGCGCATTTTGGCCGCCCGCCAGGATCGAAACTC
CAGTCCATGTCTGTTCTCGCAGAGGGGCCGTTAGATGAGGAGGAGGAAGA
GGCGGCGGAGGAAGGGACAGAGGCGTCTAAGAGGATCACGGCCCTGTCCA
TTCTAGAGTCTTTGTCGCAAACGCCCGCCGCTCCCGTGGACGGGTCGAGA
GTGGACGCAGAATCTGTAGAATCGTTGACGAACATCGTAGATGAGCGACT
GCCCATCGAAGACGACGTGTTCGAGCTGGATGGACTCGAAGGGGTGAACG
AGGAGCTGGAGGCTCTTTCTCTCCCCGAAGCAGGCAGCAGCAACATGTCT
TAG
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