mRNA_Ecto-sp6_S_contig10.456.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.456.1
Unique NamemRNA_Ecto-sp6_S_contig10.456.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.456.1 vs. uniprot
Match: A0A6H5KRW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW9_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 8.890e-98
Identity = 155/178 (87.08%), Postives = 160/178 (89.89%), Query Frame = 2 
Query:  200 MNKRTMNETALCDSILQFAGGQGLPAAGNSPYVSVPATGGSTDAAAGELAGQTPFKIDTFGGTAEPSAGTGSTTTAIQRQHLQKEGLMRAFVGTKLGEFNMRGLEAGMSMCHVEKKPGKVLNTQGRRQMRAELSGPYGGKESSLRRGKTSGPGRQVVGDVSSGGFVGNKTKPGMPDSS 733
            MNKRT++ETALCDSILQFA GQGLP AGNSPYVSVPATGGS DAAAGEL  QTPFKID FGG AEP+A T STTTAIQ QHLQKEGLMRAFVGTKLGEFNMRG+EAGMS CHVEKKPGKVLNTQGRRQMRAELSGPYG K SSLRRGKTSGPGRQVVGDV SGGFV   TK G+PDSS
Sbjct:    1 MNKRTLDETALCDSILQFADGQGLPVAGNSPYVSVPATGGSADAAAGELVDQTPFKIDNFGGPAEPNAATASTTTAIQ-QHLQKEGLMRAFVGTKLGEFNMRGVEAGMSWCHVEKKPGKVLNTQGRRQMRAELSGPYGEKGSSLRRGKTSGPGRQVVGDVRSGGFVEKNTKSGVPDSS 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRW9_9PHAE8.890e-9887.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:355871..358376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size923
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_002410.1
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.3005958-UTR-Ecto-sp6_S_contig10:355870..3560691682348698.3005958-UTR-Ecto-sp6_S_contig10:355870..356069Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 355871..356069 +
1682348698.3355923-UTR-Ecto-sp6_S_contig10:358213..3583761682348698.3355923-UTR-Ecto-sp6_S_contig10:358213..358376Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 358214..358376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.3098898-CDS-Ecto-sp6_S_contig10:356069..3563541682348698.3098898-CDS-Ecto-sp6_S_contig10:356069..356354Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 356070..356354 +
1682348698.3233001-CDS-Ecto-sp6_S_contig10:357937..3582131682348698.3233001-CDS-Ecto-sp6_S_contig10:357937..358213Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 357938..358213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.456.1prot_Ecto-sp6_S_contig10.456.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 356070..358213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.456.1

>prot_Ecto-sp6_S_contig10.456.1 ID=prot_Ecto-sp6_S_contig10.456.1|Name=mRNA_Ecto-sp6_S_contig10.456.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=187bp
MNKRTMNETALCDSILQFAGGQGLPAAGNSPYVSVPATGGSTDAAAGELA
GQTPFKIDTFGGTAEPSAGTGSTTTAIQRQHLQKEGLMRAFVGTKLGEFN
MRGLEAGMSMCHVEKKPGKVLNTQGRRQMRAELSGPYGGKESSLRRGKTS
GPGRQVVGDVSSGGFVGNKTKPGMPDSSYPPASKDR*
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mRNA from alignment at Ecto-sp6_S_contig10:355871..358376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.456.1 ID=mRNA_Ecto-sp6_S_contig10.456.1|Name=mRNA_Ecto-sp6_S_contig10.456.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2506bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:355871..358376+ (Ectocarpus species6 EcLAC_371)
AGAGCCTGGCCTCTACAACCCAGGCCCTGACCAGCAGCTCCTGTTGCTGG
CTTTTCACGCCTTGGGTCGTTTCACTTCCCGATTAGGCTCTCCGTGTGCA
CGTGTCGTACCCACGGGCGGCACGTGGTTCGGAGTGGATCGCCTGCTGTA
CATAGTGGATTTTCGTCGCGTTGTTGCTGTGCTGTGTGTGTGTGGAGGAA
TGAACAAGCGAACAATGAATGAGACAGCATTGTGCGATTCAATTCTCCAG
TTTGCCGGCGGACAGGGTCTACCGGCCGCGGGGAATTCTCCCTATGTTTC
CGTGCCGGCCACGGGAGGCTCAACTGATGCAGCAGCTGGCGAGCTGGCCG
GTCAGACACCATTCAAAATAGACACCTTCGGCGGGACTGCTGAGCCTAGC
GCTGGCACCGGCTCTACGACGACTGCAATTCAACGACAACACCTGCAAAA
GGAGGGATTGATGCGGGCTTTCGTTGGCACCAAGGTACGCGGGTTGAGGT
GTAGCAGTGATGGAAAAGAGGGCTGTGAAAAGCCTATGTCTTAACTGGAG
GTGGTTCGACACTCCTCGATCGAAAGTTGGCTTTGTTGAAACGCACATCC
CGTTCGACTGTGGGTATATCTCGACTCTTTCTGTGCGTGTTTTAATTATT
CCTTAATTAGTTCATGCGCACTTTCTTGCGTGGTTTCGGCCCGTCGAAAG
TCAAAAGGGCTCGACAAAAGGGCTCGACGACTTCAACACTGCACGCGCCA
CGGTGCTGGTTTCGGAGACTTGAAGATCCGCCGATTCCAGCGGTGTTTAC
CGACATCAGAGCGGATACGCGGCCCCGCCTAGTTCTCGAGGGGCCCGTAT
TGACTGTTGTCAACCCGCGGAATAGCTGGACCTGTGTGTTAGTCGTAGTG
ACACCTCATGTGTAAGTTGTACAGCAGATCCGTTGAATATTGGAAGCGAA
CGAATGATCAAATGATTTTGTAGCTCGGGGCATGTATGCATGTTTAGCAT
AAACCCTGTTGCGCGTACAATAGAACGCAGCAATTTCTGACCTAGAGAAA
TACCCTGAGGTGTCCACCATGTCACTCACGATCAGCAGCGGCTTACGGGG
TCTAAAGTTGTTCGAACGGGAGCTCATGGAAGGCAGAGGAGCGGACAACC
CTTTCTATGAGGAAGAATAAATTAACACAGAAAGACTACCCGTTCGAGAT
ATGCCCACAGCAGTCCACGGGATGTTTTTCTTTTTTCTGACGTCGAGACT
ATTTGTATGTAATATGTAATCGCTGTACCTTTTTGTTCCACTGCTGTGAC
AATTTGCCGTTCTTGACTTGGACGAGAGAACTGGTTTTTCTGTCACAAGC
AAGCGTGTCTTTAGTACAAGTCGGCTGGTGTGCTATTAGAGAACCCTATT
TTAAGCCGGACGCGAGCTCAAAATTGTATTTTATACGAGGTGGACACACA
TCAGTTTGTGAAACTTGTATGTGTCGAGAGTTGCGGTCTTGCGCATGCGT
CTCGAGCTGTTCTTGTAGATACAACCAAGACGCCAGGAGATACATCCTCG
TCTTACTGCTCGGGGTCTCCAGCCAGCTACTGGTATGCACCTGCAAGCAA
CGCGATCACGGCGCACTCCAGAGGCGGGAATGGGTGCCTTTCTTGCAAAG
CATAGATTATGGAAGGGATAGCCAGTAGGGCCGGGCCGGCTTGAATATTA
GGATGCAAAGGGCGAACAGCGCCATTTCAAACAGAAAATCATCGCCGTCA
GACGAACATCTTCAAGAAAGGTTTTGGGCCCACAGTGTTTCTCGTCGAGA
ATAAACTTTTGGGGCAGATAATGAAGTGTAGTCCATGCTTGCGGCCAAGA
AATGGGGACATGGGTTTGTTCCATTGTACTATCACAATCGCTTGGTGATG
TCTGTTTTCGAATTACAGTGGCAATCACGCCGGTATGTGCCCGGCGCATC
GCCCGGCGCTATCCAGGGGGACCGGCGATTACAACGCTTTTATTGTAAGT
GCAATGCTGCCCGCGTCAACGTATCTTTGACTTCCTTGTTCGACCCCCTG
CGCGCGCTACTGGCCAGCTTGGGGAATTCAATATGCGGGGGCTTGAGGCG
GGCATGTCGATGTGCCATGTCGAAAAGAAGCCAGGGAAGGTTTTGAATAC
GCAAGGCCGGCGGCAAATGCGGGCGGAGCTCAGCGGCCCGTACGGCGGGA
AAGAGTCGTCACTACGGAGGGGGAAAACAAGTGGACCCGGACGCCAGGTG
GTGGGCGACGTTAGTAGTGGTGGCTTTGTTGGAAACAAAACAAAACCGGG
GATGCCGGACAGCTCGTATCCGCCTGCCTCGAAAGATCGGTGAGGGTAGC
GTCGATCTGGCGGGACGCGGATTGCTACTTACGCCCGCCCGCCACCGGAT
CCGACGGTCCACTGGGATGCCTTGTTTCTGCATCTCGGTGCTTGATGTGG
AAACCAGCTGCTACTTCAAACCGTAGGTGTGCGACCGTTTCGTGGAACAC
CTAGTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:355871..358376+

>mRNA_Ecto-sp6_S_contig10.456.1 ID=mRNA_Ecto-sp6_S_contig10.456.1|Name=mRNA_Ecto-sp6_S_contig10.456.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:355871..358376+ (Ectocarpus species6 EcLAC_371)
ATGAACAAGCGAACAATGAATGAGACAGCATTGTGCGATTCAATTCTCCA
GTTTGCCGGCGGACAGGGTCTACCGGCCGCGGGGAATTCTCCCTATGTTT
CCGTGCCGGCCACGGGAGGCTCAACTGATGCAGCAGCTGGCGAGCTGGCC
GGTCAGACACCATTCAAAATAGACACCTTCGGCGGGACTGCTGAGCCTAG
CGCTGGCACCGGCTCTACGACGACTGCAATTCAACGACAACACCTGCAAA
AGGAGGGATTGATGCGGGCTTTCGTTGGCACCAAGCTTGGGGAATTCAAT
ATGCGGGGGCTTGAGGCGGGCATGTCGATGTGCCATGTCGAAAAGAAGCC
AGGGAAGGTTTTGAATACGCAAGGCCGGCGGCAAATGCGGGCGGAGCTCA
GCGGCCCGTACGGCGGGAAAGAGTCGTCACTACGGAGGGGGAAAACAAGT
GGACCCGGACGCCAGGTGGTGGGCGACGTTAGTAGTGGTGGCTTTGTTGG
AAACAAAACAAAACCGGGGATGCCGGACAGCTCGTATCCGCCTGCCTCGA
AAGATCGGTGA
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