mRNA_Ecto-sp6_S_contig10.454.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.454.1
Unique NamemRNA_Ecto-sp6_S_contig10.454.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: D7G906_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G906_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 1.640e-84
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 1
Query:    1 MLAAFARNPRLCVPAAVKVCAEFPLRAISVAGSDSRACYWPLEQRRGLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSPP 390
            M AAFARNPRLCVPAAVK CAEFPLRAI+VAGSDSRACYWPLEQRRGLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSPP
Sbjct:    1 MWAAFARNPRLCVPAAVKACAEFPLRAIAVAGSDSRACYWPLEQRRGLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSPP 130          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A7S2CEL3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEL3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.960e-22
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 MLAAFARNPRLCVPAAVKVCAEFP--LRAISVAGSDSRACYWPLEQRRGLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSP 387
            ML A  R+    +PA    C   P  L A+   G      + P+         S+ P+ED +   L + +E +  +V D+SGGCGSMYKIEVESPLFRG  LV QHRMV   L  EI +MHGLT+ TR SP
Sbjct:   11 MLRAIGRSAAAAIPARQAPCVVAPSSLPALPALGG---VLHRPMS--------SEVPKEDLMKEALIAALEPTDVLVEDVSGGCGSMYKIEVESPLFRGVNLVKQHRMVTDTLKKEIGEMHGLTINTRRSP 130          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A4D9DBR1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBR1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.570e-20
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1
Query:  166 REDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRP 381
            RED + ++L    + +  ++ D+SGGCG+MY +EVES LFRGK LVAQHRMV   LA EI++MHGL+L TRP
Sbjct:   52 REDRMRALLSEHFKPTHLLIQDVSGGCGAMYNMEVESELFRGKALVAQHRMVNQVLAKEISEMHGLSLKTRP 123          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A836CI04_9STRA (Bola protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI04_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.300e-20
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   79 AISVAGSDSRACYWPLEQRRGLSNGSDSP--REDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSP 387
            A+  +  +S   ++ L Q      G+++   +E A+  +L  +++A+K  V DISGGCGSMY I +ESPLF+G  LV QH++VK+ L  EIA MHGLTL T+ SP
Sbjct:    9 ALRASRQNSTYPFFRLTQTPARWQGTEAAGSQEKAMEKLLGKELKATKVTVEDISGGCGSMYSIAIESPLFKGLSLVKQHQLVKSTLKKEIAAMHGLTLQTKVSP 113          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A1V9Y5G4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5G4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.860e-18
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  160 SPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLT 375
            S  E+ +A  L  ++ A+   V DISGGCGSMYKIEV SP F GK +VAQHR+V   L  EIA MHGLTL T
Sbjct:   16 SAAEEKMAVALRQELSATHVKVDDISGGCGSMYKIEVASPTFEGKNVVAQHRLVNQVLKEEIAGMHGLTLKT 87          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A8K0AJV7_ANDGO (Mitochondrial BolA domain-containing protein n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AJV7_ANDGO)

HSP 1 Score: 82.8 bits (203), Expect = 3.540e-18
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  136 RGLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSPP 390
            R LS  ++ P E +I+ IL S ++ SK  V DISGGCG  + + VESP+FRGK +V QHRMV + L  E+  MH L + T+P+ P
Sbjct:    8 RLLSTAAEGPTEASISKILRSALQPSKLNVQDISGGCGVSFAVVVESPMFRGKTIVEQHRMVNSVLKQEMEVMHALRISTKPTSP 92          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A7S2H125_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H125_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.910e-18
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  136 RGLSNGSDSP---REDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSP 387
            R LS GS+S    +E+++   L   + AS   V DISGGCG+MYK+EVESP FRG  ++ QHR+V   L  EI +MHGLTL TR +P
Sbjct:   25 RILSIGSESDGVSKEESMRLALSQALNASFVSVDDISGGCGAMYKLEVESPDFRGLNMLKQHRLVTQVLKKEIGEMHGLTLQTRVTP 111          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A067C2D2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2D2_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-17
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  133 RRGLSNGSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLT 375
            R   + G  +  E+ +A+ L   + A+   V DISGGCGSMYKIEV SP F GK  VAQHR+V   L  EI  MHGLTL T
Sbjct:   11 RPASARGLSTTAEEKMATSLRQALSATHVKVDDISGGCGSMYKIEVASPTFEGKNRVAQHRLVNEVLKEEIGGMHGLTLKT 91          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: A0A369SM06_9METZ (BolA-like protein 3 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SM06_9METZ)

HSP 1 Score: 82.4 bits (202), Expect = 2.720e-17
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   64 EFPLRAISVAGSDSRACYWPL----EQRRGLSNGSD---SPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLT 375
            E P+   ++    +R   W L      RR LS+  D   S  E  I+SIL+  +  S   V DISGGCGSMY+I ++S  F+GK ++ QHRMVK ALA EI +MHGLT+ T
Sbjct:   50 ELPINTNTLRSESNR---WLLLANNVSRRCLSSQPDLKQSKGEQHISSILKDTVNPSYLEVRDISGGCGSMYEILIQSDNFKGKSIIQQHRMVKEALAEEIKNMHGLTIRT 157          
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Match: B3S7G9_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S7G9_TRIAD)

HSP 1 Score: 80.5 bits (197), Expect = 5.120e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  169 EDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLT 375
            E  I+SIL+  +  S   V DISGGCGSMY+I ++S  F+GK ++ QHRMVK ALA EI +MHGLT+ T
Sbjct:   45 EQHISSILKDTVNPSYLEVRDISGGCGSMYEILIQSDNFKGKSIIQQHRMVKEALAEEIKNMHGLTIRT 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G906_ECTSI1.640e-8497.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CEL3_9STRA1.960e-2244.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9DBR1_9STRA1.570e-2056.94Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CI04_9STRA3.300e-2044.76Bola protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A1V9Y5G4_9STRA2.860e-1858.33Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K0AJV7_ANDGO3.540e-1848.24Mitochondrial BolA domain-containing protein n=1 T... [more]
A0A7S2H125_9STRA7.910e-1851.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067C2D2_SAPPC1.720e-1751.85Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A369SM06_9METZ2.720e-1745.05BolA-like protein 3 n=1 Tax=Trichoplax sp. H2 TaxI... [more]
B3S7G9_TRIAD5.120e-1756.52Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:349054..350637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score254.2
Seed ortholog evalue3.3e-65
Seed eggNOG ortholog2880.D7G906
Preferred nameBOLA3
Model size393
KEGG koko:K22075
Hectar predicted targeting categorymitochondrion
GOsGO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006355,GO:0006357,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0010467,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0097428,GO:0106035,GO:0140110,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG3348@2759
Ec32 ortholog descriptionBolA protein
Ec32 orthologEc-15_002390.1
Cds size393
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348698.1799383-CDS-Ecto-sp6_S_contig10:349053..3491571682348698.1799383-CDS-Ecto-sp6_S_contig10:349053..349157Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 349054..349157 +
1682348698.1924324-CDS-Ecto-sp6_S_contig10:349572..3496621682348698.1924324-CDS-Ecto-sp6_S_contig10:349572..349662Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 349573..349662 +
1682348698.2015893-CDS-Ecto-sp6_S_contig10:350438..3506371682348698.2015893-CDS-Ecto-sp6_S_contig10:350438..350637Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 350439..350637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.454.1prot_Ecto-sp6_S_contig10.454.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 349054..350637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.454.1

>prot_Ecto-sp6_S_contig10.454.1 ID=prot_Ecto-sp6_S_contig10.454.1|Name=mRNA_Ecto-sp6_S_contig10.454.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=131bp
MLAAFARNPRLCVPAAVKVCAEFPLRAISVAGSDSRACYWPLEQRRGLSN
GSDSPREDAIASILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGL
VAQHRMVKAALATEIADMHGLTLLTRPSPP*
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mRNA from alignment at Ecto-sp6_S_contig10:349054..350637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.454.1 ID=mRNA_Ecto-sp6_S_contig10.454.1|Name=mRNA_Ecto-sp6_S_contig10.454.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1584bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:349054..350637+ (Ectocarpus species6 EcLAC_371)
ATGTTGGCCGCCTTTGCTAGAAATCCTCGGCTTTGTGTGCCGGCAGCGGT GAAGGTCTGCGCTGAGTTTCCATTGAGAGCTATTTCTGTGGCTGGATCGG ACAGGTGAGCTGGCACCTCAAACAGATCGACCTGTTTCATACGTAGCTCC CACTTGAGGCCTGCTACAAAAGCTGCTGCTACAAATGTGTACCTACAGAA TAGGTGCTGCATTACCGTATGCGACACAAGCGTTGCTTGGCAATTTGCTG CATTACCGTATGCGACACAAGCGTTGCTTGGCAAACGCGTACCTCTTGCG GCTGTTCACGCACGGCTGTCCTGCAGGACGCATGAGAAATTGCCATGGTT CCATCCTTTTTTCACGAGTTCGTGCGAACCTGAACTGCTGTACTTCTTGC CCTTCGTTGAACCACGGTTTGCGAATTACTGCTACATGTACAATAGCACT GGTTCTAGGCCTGGCGCACTGACTCTCTCGCCTTTGCTGTACGCCTCACT CGGCCACCCTTCGGTGTAGCCGAGCATGCTATTGGCCACTCGAGCAGCGA CGCGGCCTCAGCAACGGTTCGGACAGTCCAAGAGAAGATGCGATCGCGTC GATACTTGAGTAAGTAAGCAGCTCGTGACTCGATGTATTTCAGCATACAG CCAAGAACAGCAGGATTACGAAAAAAAAAATTCTGCACACTTGAGGCGAT TTTTGTTGGGAGGCTATGGATAATATGGTACATAACACGTACCATCAGCT CTGCCTGGGGAAGTGCATGTGAAATGCAGTAGGATAGGGGTACCTGTGTT GTGTTGTATGAAAGAATATCGCACGCTGTGTAAGATGTACCTTTCTTCAA GATAATTGTTTGTATTGTTGTGCCCTTCATATCATGAGGTGTGTGCGTAC AGCAGTACGTCGGAGTTTTTTTGTTTGTTTTGGGACGTTCATAACCTCTT GTTAGTTGCCCGGTGGAGATTTTCTTTTTGCCAATCTTGAGGATATCCGC CCGGGACGAACATACTACAATCGACGATCTCCTCTTGCCGGCAGTTGGCC AATCGTTGCTGTTATTGTGGCTCCCATGTTGCTACTTTCCGTGAACATAT TTCGGCCCATGGCAAGCCTGTATGTGTTGTGGTTTTCGTCTCTGATTCCG CTACGCGCCCCAGAGGACGTTGCCCGCCTCTGGGTGTTTCGTCTGTCTCA AGGTCCCCCCCCCTTTGCTTATTTAGCGCCGGGGTGGTATTTTACAAATC GTTACTGTTGCCCGGGGGCTATGGCAGAGGATTATACAGTGATTGACCCG ACGCGTCGAATACGTTCAGAAGGGACGGAAGTGTTGCTCAATCCAACACG TGCTTTGCCTTCCTACGCTGTGCCTTGTTGCGCAGGTCGAAGATAGAGGC ATCGAAAGCTGTCGTGCATGATATCTCAGGGGGGTGCGGGAGCATGTACA AAATCGAGGTCGAGTCACCGTTGTTTCGGGGCAAGGGTCTGGTGGCGCAA CACCGCATGGTGAAGGCCGCTCTCGCGACCGAGATCGCGGACATGCATGG GCTAACGCTGCTCACGAGGCCATCGCCACCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:349054..350637+

>mRNA_Ecto-sp6_S_contig10.454.1 ID=mRNA_Ecto-sp6_S_contig10.454.1|Name=mRNA_Ecto-sp6_S_contig10.454.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:349054..350637+ (Ectocarpus species6 EcLAC_371)
ATGTTGGCCGCCTTTGCTAGAAATCCTCGGCTTTGTGTGCCGGCAGCGGT
GAAGGTCTGCGCTGAGTTTCCATTGAGAGCTATTTCTGTGGCTGGATCGG
ACAGCCGAGCATGCTATTGGCCACTCGAGCAGCGACGCGGCCTCAGCAAC
GGTTCGGACAGTCCAAGAGAAGATGCGATCGCGTCGATACTTGAGTCGAA
GATAGAGGCATCGAAAGCTGTCGTGCATGATATCTCAGGGGGGTGCGGGA
GCATGTACAAAATCGAGGTCGAGTCACCGTTGTTTCGGGGCAAGGGTCTG
GTGGCGCAACACCGCATGGTGAAGGCCGCTCTCGCGACCGAGATCGCGGA
CATGCATGGGCTAACGCTGCTCACGAGGCCATCGCCACCCTAG
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