mRNA_Ecto-sp6_S_contig10.444.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI) HSP 1 Score: 422 bits (1086), Expect = 1.930e-148 Identity = 218/232 (93.97%), Postives = 220/232 (94.83%), Query Frame = 1
Query: 73 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMQELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAPDQGGXXXXXXXXXGR 768
MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQM+ELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDG+IVG DYKSLVGPLASTRNCTKMPV EYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQ GTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAPDQGG GR
Sbjct: 1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAPDQGGAATPPAAGGGR 232
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: A0A7S4D4Q0_HETAK (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q0_HETAK) HSP 1 Score: 90.1 bits (222), Expect = 7.950e-18 Identity = 66/185 (35.68%), Postives = 102/185 (55.14%), Query Frame = 1
Query: 139 LSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLR---DASQMQELIANDGLYLIRVATDESS--NQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKE---QTGTKDAKAA-GNQSLL 666
L VEH+F ++++ R E+ I P + LQ + + +Q+++LIAN G Y IR+ ++ ++ + V+AA+SAC L A+FREEI LH++ I+G Y + LA R+C P+ E + TK+ V A+ QSVPLQ PPPGL+ L++ G +D K +QS L
Sbjct: 52 LQVEHSFTEDSKFSPREDWEMAISPVSRQLTVDKLQGSAQSSGMERNQIKDLIANGGFYRIRLHSNPTNPDSPMVMAAISACDLHKANFREEIVLHLDPHQNIIGMTYSAPSSVLA--RDCHSKPLPEDIKFDTKIKVAEASIGQSVPLQAQAARPPPGLAGLQKFRAAAGGEDGKGGPASQSFL 234
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: A0A7S2S2Z1_9STRA (ER membrane protein complex subunit 10 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S2Z1_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.430e-14 Identity = 60/213 (28.17%), Postives = 99/213 (46.48%), Query Frame = 1
Query: 139 LSVEHAFGPAAEWTHRGFLELDIDPSRAKA---FSASLQPATLRDASQMQELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNC--TKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGNQS--------LLVKYWYIFLPCVLLFMFSA--PDQG 732
L+VEH+FGP W RG + L ++ + K FS + D L+ N+G Y +R+ + + + + A++ AC L FRE + H++++ ++G D+ P+ TR C +K L+ ++V+K Q VP + P G SA T + A G+ L KYWY+FLP VL+ + P++G
Sbjct: 33 LAVEHSFGPGV-WKERGTIGLTVNTEKKKVALRFSTTSLNFEKDDREAFDALLKNNGFYRVRIRS-QFGDSWLTASIPACVLAAGHFRENLRFHIDKNAALIGFDHI----PVVKTRGCDASKYLGLDSIKLVSKGSASLPQEGQHVPKNAIPVGIPQG-SAGANVAQTMEKSAGGDSGEKQEEEPHFLRKYWYVFLPLVLISVLGPGPPEEG 238
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: A0A7S3PTA5_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PTA5_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.600e-10 Identity = 56/223 (25.11%), Postives = 103/223 (46.19%), Query Frame = 1
Query: 145 VEHAFGPAAEWTHRGFLELDIDPSRAKA---FSASLQPATLRDASQMQELIANDGLYLIRVAT--DESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVT--KVVVVRAASAQSVPLQV----------------LQNSPPPGLSALKE-QTGTKDAKAAG----NQSLLVKYWYIFLPCVLLFMFSAPDQ 729
++H+F ++ RG L + + K FS+ + + M++L+ N+ LY +R+ D+ S+ +VA++ ACQ+ F+E H+++ G I + S K P E S+ ++ K VV+++ + S+P + + N PP ++E + +KD K A NQS + KYWY+FLP +L+ +F +
Sbjct: 57 IQHSFSYDGQFVDRGKLLVQVMKKSKKISIKFSSKTYEFSSDEMKGMKKLVENNRLYRVRIPLKPDDPSSPWLVASIPACQMLENDFKESFRFHLDKSGTITSFELSS------------KTPSRECSQGLSFPKSVVLKSKAVASIPKEAHGAPKRGGLNDSKGAKVANMPPELQGVIEENKPKSKDGKEAEEEAENQSFVRKYWYLFLPMLLMSVFGGSPE 267
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: A0A6P8SKT0_GEOSA (ER membrane protein complex subunit 10 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SKT0_GEOSA) HSP 1 Score: 63.2 bits (152), Expect = 3.610e-8 Identity = 58/213 (27.23%), Postives = 99/213 (46.48%), Query Frame = 1
Query: 130 ARSLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMQELIANDGLYLIRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYS-EVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGN----QSLLVKYWYIFLPCVLLFMFS-APDQG 732
A + +EH+F + +T RG L +P+ + + S + T + +++++ + +G+Y IR+ DE S QHV + V AC + + ++IT+H + G I+G ++ G +CT V + E+ V V+ A +VP +A E+ + A+ A N +S KYW +P VL M S APD G
Sbjct: 40 ALEVQLEHSFELDSSIRFTKRG--SLLWNPASEGSVTISQKQLTEEERIKLRDIASLNGVYRIRIPRKPGLDEGSVQHVTSFVPACSMVESHLSDQITIHTDLAGNIIGVSIVTVPG------SCTGAEVEDVDLELFNTTVQVQQPVAAAVP----------ETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSGAPDTG 234
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: UPI001128ED8F (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001128ED8F) HSP 1 Score: 56.2 bits (134), Expect = 9.380e-6 Identity = 55/208 (26.44%), Postives = 98/208 (47.12%), Query Frame = 1
Query: 145 VEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMQELIANDGLYLIRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYS-EVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGN----QSLLVKYWYIFLPCVLLFMFS-APDQG 732
+EH+F + +T RG L L P A + + S + T + ++++++ + +G+Y +R+ TD S ++V + V AC + + ++IT+H + G I+G ++ G +C+ V + E+ V V+ A +VP +A E+ + A+ A N +S KYW +P VL M S APD G
Sbjct: 48 LEHSFELDDSIHYTKRGSL-LWSTPLEA-SITLSQKQLTEEERNKLRDIASLNGIYRLRIPRKLGTDGDSAEYVTSFVPACSMVESHLSDQITVHTDIAGNIIGVSIVTVPG------SCSGAEVEDVDLELFNTTVQVQQPVAAAVP----------ETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSGAPDAG 237
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: UPI001E1DD8C3 (ER membrane protein complex subunit 10 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD8C3) HSP 1 Score: 55.8 bits (133), Expect = 1.150e-5 Identity = 50/181 (27.62%), Postives = 80/181 (44.20%), Query Frame = 1
Query: 226 AFSASLQPATLRDASQMQELIANDGLYLIRVATDESSNQ------HVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGN----QSLLVKYWYIFLPCVLLFMFS-APDQGG 735
+ S S + + D S+++++ A +GLY +RV + + HV + V AC L + +++TLHV+ G +VG + G C V + + +V LQ +P P +A E+ + A+ A N +S KYW +P VL M S APD GG
Sbjct: 59 SLSLSQRQLSEEDRSRLRDVAAVNGLYRLRVPRRPGATEGLEAGGHVSSFVPACSLVESHLSDQLTLHVDIAGNVVGVSVVTQPG------GCRGHEVEDVDLELFNT---------TVQLQPPTTAPGPETAAFIERLEMEQAQRAKNPQEQKSFFAKYWMYIIPFVLFLMMSGAPDAGG 224
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: UPI000854FDC3 (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854FDC3) HSP 1 Score: 55.5 bits (132), Expect = 2.010e-5 Identity = 50/210 (23.81%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 136 SLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMQELIANDGLYLIRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGN----QSLLVKYWYIFLPCVLLFMFSAPDQGG 735
++ +EH+F + + RG L ++PS ++ S + T + ++++++ +GLY +R+ E S+ +V + V AC + + +++T+H + G IVG +L G N ++ ++ + T V + Q +P V P +A E+ + A A N +S KYW +P VL M S G
Sbjct: 67 NIDLEHSFELDDSIHFKKRG--SLILNPSPDQSVSILQKQLTEDERNRLRDIANLNGLYRVRIPHKLGLSEESSHYVTSFVRACSMVESHLSDQLTVHTDISGNIVGISIVTLPGSC----NGVEVEDVDLEQFNTTVYI-----QQPIPAAV------PETAAFIERLEMEQAHKAKNPQEQKSFFAKYWMYIIPVVLFLMMSGASDAG 259
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: L7M4B0_RHIPC (ER membrane protein complex subunit 10 n=10 Tax=Ixodidae TaxID=6939 RepID=L7M4B0_RHIPC) HSP 1 Score: 54.7 bits (130), Expect = 2.580e-5 Identity = 39/205 (19.02%), Postives = 93/205 (45.37%), Query Frame = 1
Query: 136 SLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMQELIANDGLYLIRVATDESSNQHVVAAVS-ACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAPD----QGG 735
+ +V H+FG ++ ++ L + +R + + P + DA+++++L +GLY +RV ++++ + V ++ + AC L + ++ + ++R G ++G VG + + ++ ++ ++ V +V A + + +E+ + A N+S KYW +P ++ + S QGG
Sbjct: 29 TFTVSHSFGSGSDNSYVSRAVLSVPLARPSESTFNQLPLSASDAAKLRKLAEENGLYRVRVTSEQNDSPFVASSFAKACSLYESELKDHFMVTLDRSGALLGVS--DFVGHQCTGAHVPDHKLVNFNTTLS-VSIVNIAPGPDTQTYIRRME--------QEKAERARGENADNRSFFAKYWMYIMPLLIFLLISGASNPEGQGG 222
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Match: UPI001CF1B810 (ER membrane protein complex subunit 10 isoform X1 n=3 Tax=Bufo TaxID=8383 RepID=UPI001CF1B810) HSP 1 Score: 54.3 bits (129), Expect = 4.410e-5 Identity = 49/208 (23.56%), Postives = 90/208 (43.27%), Query Frame = 1
Query: 136 SLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMQELIANDGLYLIRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGIIVGADYKSLVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQTGTKDAKAAGN----QSLLVKYWYIFLPCVLLFMFSAPDQ 729
+L +EH+F + + RG L + P+ ++ S + T + ++++++ +GLY IR+ E S+++V + V AC + + ++I +H + G IVG +L G + E +V + + Q +P V P +A E+ + A+ A N +S KYW +P VL M S
Sbjct: 50 NLDLEHSFELDNSINFKKRG--SLIVGPAADQSISILQKQLTEDERNKLRDIANLNGLYRIRIPRKMGLTEESHEYVTSFVRACSIVESHLSDQIAVHTDISGTIVGVSIVTLPGSCSGA---------EVEDVDLEQFNTTVSIQQPIPAAV------PETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPVVLFLMMSGASD 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.444.1 >prot_Ecto-sp6_S_contig10.444.1 ID=prot_Ecto-sp6_S_contig10.444.1|Name=mRNA_Ecto-sp6_S_contig10.444.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=257bp SRSRSQNARQEKQPSQGHVLRRVNMKSLKTATSVAFAWCVQASARSLSVEback to top mRNA from alignment at Ecto-sp6_S_contig10:247346..251810- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.444.1 ID=mRNA_Ecto-sp6_S_contig10.444.1|Name=mRNA_Ecto-sp6_S_contig10.444.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4465bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:247346..251810- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:247346..251810- >mRNA_Ecto-sp6_S_contig10.444.1 ID=mRNA_Ecto-sp6_S_contig10.444.1|Name=mRNA_Ecto-sp6_S_contig10.444.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:247346..251810- (Ectocarpus species6 EcLAC_371)back to top |