mRNA_Ecto-sp6_S_contig10.438.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.438.1 vs. uniprot
Match: D7G918_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G918_ECTSI) HSP 1 Score: 1442 bits (3733), Expect = 0.000e+0 Identity = 781/807 (96.78%), Postives = 788/807 (97.65%), Query Frame = 1
Query: 1 MGDGENPSWLGDVIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSXXXXXXXXXSGDSGFEDAAEXXXXXXXXXDAGPSPVLKTRTESKEEATEDGDAPQSDDLKPMTPERSSKQVPPVSSAENIPSLSVTRSQISQENCDENDVQGSEEEPLGKECPQVVSSGDNAPLESATPSSSQGRLTKDDVPVLEGDVPRQKGDGKSPRQPLDVLGDLDPTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMLLMNTQISKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELASETSSPPLELESRAAVTGGHAPSEAPPARKPLASDCAAPETTAGAAEVDQASTPRRNRHRPPLEKDQGLKKADTA-LPVETRSEEPLEVRAEDGKSNGGRMPVTEEFAEAVALAYPEGRPAPDETVTTDLPEDQADANGLEEPHERENGTGHARAFQEGGYQEETRQGIEDRDEVEPDIWNEGVATIGAKRMSSENGMGYPAEEWILDAPEGFAPSKREKLQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDVAKKAVSDGSKGLESGDGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGSLATKETVPAFSYLEEADMRAALGAGVQLEGIVGEQPPEEESGIEAKERFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFNLDTHCGFVTESYGIQTIPL 2418
MGDGENPSWLG VIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSXXXXXXXXXSGDSGFEDAAEXXXXXXXXXDAGPSPVLKTRTE KEEA EDGDAPQSDDLKPM PERSSKQVPPVSSAENIPSLSVTRSQISQENCDENDVQGSEEE LGKECPQVVSSGDNAPLESATPSSSQGRLTKDDVPVLEGDVPRQKGDG SPRQPLDVLGDLDPTFSTPAH+RDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAM LMNTQISKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELA+ETSSPP ELESRAAVTGGHAPS+APPARKPLASDCAAPETTAGAAEVDQASTPRRNRHRPPLEKDQGLKKADTA LPVETRSEEPLEVRAEDGKSNGG MPVTEEFAEAVAL +PEGRPAPDETVTTDLP+DQADANGLEEPHERENGTGHARAFQEG YQEE RQGIEDRDEVEPDIWNEGVATIGAKRMSSENGMG PAEEWILDAPEGFAPSKREKLQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDVAKKAVSDGSKGLES DGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDG+LATKETVPAFSYL EADMRAALGAGVQLEGIVGEQPPEEESGIEAK+RFI TIA VREEQLRDSPVLVVAHGDTL AAGESLASQIVFEADYCAWALFNLDTHCGFVTESYGIQTIPL
Sbjct: 1 MGDGENPSWLGGVIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSXXXXXXXXXSGDSGFEDAAEXXXXXXXXXDAGPSPVLKTRTEYKEEAAEDGDAPQSDDLKPMKPERSSKQVPPVSSAENIPSLSVTRSQISQENCDENDVQGSEEESLGKECPQVVSSGDNAPLESATPSSSQGRLTKDDVPVLEGDVPRQKGDGNSPRQPLDVLGDLDPTFSTPAHNRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMSLMNTQISKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELATETSSPPPELESRAAVTGGHAPSQAPPARKPLASDCAAPETTAGAAEVDQASTPRRNRHRPPLEKDQGLKKADTAFLPVETRSEEPLEVRAEDGKSNGGSMPVTEEFAEAVALGHPEGRPAPDETVTTDLPQDQADANGLEEPHERENGTGHARAFQEGDYQEEARQGIEDRDEVEPDIWNEGVATIGAKRMSSENGMGSPAEEWILDAPEGFAPSKREKLQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDVAKKAVSDGSKGLESCDGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKETVPAFSYLAEADMRAALGAGVQLEGIVGEQPPEEESGIEAKQRFIVTIANVREEQLRDSPVLVVAHGDTLGAAGESLASQIVFEADYCAWALFNLDTHCGFVTESYGIQTIPL 807
BLAST of mRNA_Ecto-sp6_S_contig10.438.1 vs. uniprot
Match: A0A6H5KJH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH9_9PHAE) HSP 1 Score: 1271 bits (3290), Expect = 0.000e+0 Identity = 692/787 (87.93%), Postives = 722/787 (91.74%), Query Frame = 1
Query: 1 MGDGENPSWLGDVIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSXXXXXXXXXSGDSGFEDAAEXXXXXXXXXDAGPSPVLKTRTESKEEATEDGDAPQSDDLKPMTPERSSKQVPPVSSAENIPSLSVTRSQISQENCDENDVQGSEEEPLGKECPQVVSSGDNAPLESATPSSSQGRLTKDDVPVLEGDVPRQKGDGKSPRQPLDVLGDLDPTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKKRSNEGLNAMLLMNTQISKDAGHVSPSRAPRLPGSKKKKKFSYVSDTTWMKPKEELASETSSPPLELESRAAVTGGHAPSEAPPARKPLASDCAAPETTAGAAEVDQASTPRRNRHRPPLEKDQGLKKADTALPVETRSEEPLEVRAEDGKSNGGRMPVTEEFAEAVALAYPEGRPAPDETVTTDLPEDQADANGLEEPHERENGTGHARAFQEGGYQEETRQGIEDRDEVEPDIWNEGVATIGAKRMSSENGMGYPAEEWILDAPEGFAPSKREKLQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDVAKKAVSDGSKGLESGDGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGSLATKETVPAFSYLEEADMRAALGAGVQLEGIVGEQPPEEESGIEAKERFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFN 2361
MGDGE PSWLG +IDQVDRLALKIGGYEE +PPGNGFSDDESDSNST+ XXXSGD FE XXXXXXXXX AGPSPVLKTRTE KEEA E GDAPQSDDL+PM PE+SSKQ+PPVS A+NIPSLSV RSQ SQENCDENDVQGSEE+PLGKE PQVVSSGDNAPL+SAT S S+G LTKDDVPVLEGD+PR +GDG SPRQPLDV+GD+D TFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKK NEGLNA MNTQI KDAGHVSPS APRLPGSKKKK FSYVSDTTW+KPKEELA+ETSSPPLEL SRAAVTGGHAPS+ PPARKPLASDCAA E T GAAEVDQ+STPRRNRHRPP EKD GLKKADT P+ETR EEPL VRAEDGKSNGGRMPVTEE AEAVALA+PEGRPAPDETVTT LPEDQADANGLEEPHERENGTGHARAFQEGGYQEE RQGI+DRDEVEP IWNEGVATIGAKRMSSENGMG PAEEWILD+PEGFAPSKR KLQSEHPLAVMRHSARLDDAIFERQR LGA+TAGSGSDEDVAKKAVSDGSKGLESGDGDELAAVPWPDRALRPYD PIVDTDLPARQAKALGRLGMGSQTVI+CSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDG+LATKE VPAFSYLEEADMRAALGAGVQLE I+GEQPPEEESGIEAK+RFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFE A+++
Sbjct: 1 MGDGEKPSWLGSMIDQVDRLALKIGGYEEPKPPGNGFSDDESDSNSTNSGSSSEXXXSGDXXFEXXXXXXXXXXXXX-AGPSPVLKTRTEYKEEAAEGGDAPQSDDLEPMKPEQSSKQIPPVSIADNIPSLSVRRSQTSQENCDENDVQGSEEKPLGKEYPQVVSSGDNAPLDSATSSRSEGLLTKDDVPVLEGDLPRPQGDGNSPRQPLDVVGDVDSTFSTPAHSRDRDALRKGPPLDAVPVASSAGSRRVNREKKN-NEGLNAKSPMNTQILKDAGHVSPSGAPRLPGSKKKKNFSYVSDTTWIKPKEELAAETSSPPLELASRAAVTGGHAPSQVPPARKPLASDCAAAEATEGAAEVDQSSTPRRNRHRPPREKDHGLKKADTDFPMETRPEEPLHVRAEDGKSNGGRMPVTEEIAEAVALAHPEGRPAPDETVTTHLPEDQADANGLEEPHERENGTGHARAFQEGGYQEEARQGIDDRDEVEPGIWNEGVATIGAKRMSSENGMGSPAEEWILDSPEGFAPSKRGKLQSEHPLAVMRHSARLDDAIFERQRMLGAITAGSGSDEDVAKKAVSDGSKGLESGDGDELAAVPWPDRALRPYDPPIVDTDLPARQAKALGRLGMGSQTVIVCSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGTLATKEAVPAFSYLEEADMRAALGAGVQLERIIGEQPPEEESGIEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGQMICAAMYS 785
BLAST of mRNA_Ecto-sp6_S_contig10.438.1 vs. uniprot
Match: A0A835YJL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJL4_9STRA) HSP 1 Score: 109 bits (273), Expect = 5.830e-21 Identity = 108/360 (30.00%), Postives = 135/360 (37.50%), Query Frame = 1
Query: 1789 WPDRALRPYDSPIVDTDLPARQAKAL---GRL------GMGSQTV----------------------------IICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAE--LALDSEERSDGSLATKETVP----------AFSYLEEADMRAALGAGVQLEGIVGEQPPEEESGIEAKERFIATIAKV-REEQLRD---------------------------------------------------------------------------------------------SPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFNLDTHCGF-------VTESYGIQTIPL 2418
W DRA RPYD+PIVD AR A A+ G L G TV I+ SPFRRCLQTAG VAR G V VHL VGERMDKVR+E L +D E + A+ P AF+YL +M ALG GV L ++GE+PP ES ++AK R+ +A++ R ++L S V+VVAHGDTL AA ESLA +++EADYCAW + G V G+Q +PL
Sbjct: 395 WTDRAARPYDTPIVDDGRAARAALAVLDSGALEGAWYSGASDATVWEMAAAGAPIGXXXXXXXXXXXXXXXLCIVSSPFRRCLQTAGHVARVFGCGVVHVHLGVGERMDKVRQECGPGTLLVDPAEEAQRPDASASDAPPPAASSLRRVAFAYLTPEEMGDALGEGVALGTVLGERPPLTESAMQAKLRYSHVLARMCRGKELPAVANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKARTGISHVVVVAHGDTLGAAAESLAGHLLYEADYCAWLAVAVGQRGGVGGGALGGVAACAGVQMMPL 754
BLAST of mRNA_Ecto-sp6_S_contig10.438.1 vs. uniprot
Match: A0A812JSX5_9DINO (VAPB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JSX5_9DINO) HSP 1 Score: 73.6 bits (179), Expect = 1.520e-9 Identity = 66/216 (30.56%), Postives = 96/216 (44.44%), Query Frame = 1
Query: 1789 WPDRALRPYDSPIVDTDLPARQAKALGR-LGMG-SQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAELALDSEERSDGSLATKETVPAFSYLE-EADMRAALGAGVQLE-GIVGEQPPEEESGIEAKERF-----IATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEADYCAWALFNLDTHCGFVTESYGIQT 2409
WPD RPYD+PI + +LP A+ L L G + ++ SPFRRCLQTA + R LG+ + V ++GE M V ++ + L++ F Y+ E A AG+QL + P +ES + R IA A +EE VL+V H D L L ++ + CAW L L H V + ++T
Sbjct: 34 WPDAGQRPYDTPISNEELPLESAQVLKESLPEGVAVCAVVSSPFRRCLQTAALAGRQLGLKMLHVDNRLGELMAAVARDCGPVKLEA--------------LGFRYISFEEAANIAEEAGLQLHWDPAADVPATDESAADILRRVDAGAAIARSALGKEEFSPTECVLLVTHADLLMQRLSKLMPGSIWAPETCAWFLECL--HDDSVPSMHRLET 233 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.438.1 >prot_Ecto-sp6_S_contig10.438.1 ID=prot_Ecto-sp6_S_contig10.438.1|Name=mRNA_Ecto-sp6_S_contig10.438.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=807bp MGDGENPSWLGDVIDQVDRLALKIGGYEEAEPPGNGFSDDESDSNSTSSGback to top mRNA from alignment at Ecto-sp6_S_contig10:203963..209531- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.438.1 ID=mRNA_Ecto-sp6_S_contig10.438.1|Name=mRNA_Ecto-sp6_S_contig10.438.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5569bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:203963..209531- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:203963..209531- >mRNA_Ecto-sp6_S_contig10.438.1 ID=mRNA_Ecto-sp6_S_contig10.438.1|Name=mRNA_Ecto-sp6_S_contig10.438.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2421bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:203963..209531- (Ectocarpus species6 EcLAC_371)back to top |