mRNA_Ecto-sp6_S_contig10.432.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI) HSP 1 Score: 1030 bits (2663), Expect = 0.000e+0 Identity = 531/536 (99.07%), Postives = 532/536 (99.25%), Query Frame = 1
Query: 19 TLRRINALSASTRSLRLVAFRGRSRHTSGFGPYEKFELAPQELIASTTQTKRSEQQDMLRLRQTDGSDVFQWVDSRMDDAEIAEAASRCVLLHGLFEVWGHGRNREDAIRDAFKSGRFLQHAGNASWSLGVTRYGRSNLNKEEQQALAGGPVETFLSSFLKGPRIELVNSDIRVRIIEDLCPPPAENLPRDVRERAEASAAARRRRENTFYICRELQLGAAVGVGGTVMATGCGRRPVRGVLGALALNRRRCRGPTAIEPEVALIMANLAKVRPGSRVLDPFCGSCSLLLPAAHMGAKTWGSDVSGPATASEEAGALAGGDTGAEGGVRQADREDFEQIYQDFQALGVAAPTLVAADVGDEESPVRRPEFYDAIVTDPPYNIKAKVVTTSLATKTSGRHEEAGSVLPAAGIDSTAHASSEAGSEWKAGGGARAEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPLRGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEKELDGPALDGEMDQT 1626
T RINALSASTRSLRLVAFRGRSRHTSGFGPYEKFELAPQELIASTTQTKRSEQQDMLRLRQTDGSDVFQWVDSRMDDAEIAEAASRCVLLHGLFEVWGHGRNREDAIRDAFKSGRFLQHAGNASWSLGVTRYGRSNLNKEEQQALAGGPVETFLSSFLKGPRIELVNSDIRVRIIEDLCPPPAENLPRDVRERAEASAAARRRRENTFYICRELQLGAAVGVGGTVMATGCGRRP RGVLGALALNRRRCRGPTAIEPEVALIMANLAKVRPGSRVLDPFCGSCSLLLPAAHMGAKTWGSDVSGPATASEEAGAL GGDTGAEGGVRQADREDFEQIYQDFQALGVAAPTLVAADVGDEESPVRRPEFYDAIVTDPPYNIKAKVVTTSLATKTSGRHEEAGSVLPAAGIDSTAHA+SEAGSEWKAGGGARAEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPLRGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEKELDGPALDGEMDQT
Sbjct: 7 TTHRINALSASTRSLRLVAFRGRSRHTSGFGPYEKFELAPQELIASTTQTKRSEQQDMLRLRQTDGSDVFQWVDSRMDDAEIAEAASRCVLLHGLFEVWGHGRNREDAIRDAFKSGRFLQHAGNASWSLGVTRYGRSNLNKEEQQALAGGPVETFLSSFLKGPRIELVNSDIRVRIIEDLCPPPAENLPRDVRERAEASAAARRRRENTFYICRELQLGAAVGVGGTVMATGCGRRPTRGVLGALALNRRRCRGPTAIEPEVALIMANLAKVRPGSRVLDPFCGSCSLLLPAAHMGAKTWGSDVSGPATASEEAGALVGGDTGAEGGVRQADREDFEQIYQDFQALGVAAPTLVAADVGDEESPVRRPEFYDAIVTDPPYNIKAKVVTTSLATKTSGRHEEAGSVLPAAGIDSTAHAASEAGSEWKAGGGARAEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPLRGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEKELDGPALDGEMDQT 542
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: TBA2_PELFA (Tubulin alpha-2 chain n=45 Tax=cellular organisms TaxID=131567 RepID=TBA2_PELFA) HSP 1 Score: 193 bits (490), Expect = 9.860e-50 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY
Sbjct: 357 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 453
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A6A3JM66_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JM66_9STRA) HSP 1 Score: 178 bits (451), Expect = 7.350e-49 Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPP+VVPGGDLARVQRAVCM++NT+AIAE SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAE EGE+E+FGEEY
Sbjct: 3 YQPPSVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEAEGEDEEFGEEY 99
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A7S0Q113_9EUKA (Tubulin alpha chain n=24 Tax=Eukaryota TaxID=2759 RepID=A0A7S0Q113_9EUKA) HSP 1 Score: 189 bits (481), Expect = 1.570e-48 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPPTVVPGGDLARVQRAVCMV+NTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEED GEEY
Sbjct: 357 YQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDMGEEY 453
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A067C433_SAPPC (Tubulin_C domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C433_SAPPC) HSP 1 Score: 179 bits (454), Expect = 4.640e-48 Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPPTVVPGGDLARVQRAVCM++NT+AIAE SRIDHKFDLMYAKRAF HWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGEGEEE+ GEEY
Sbjct: 90 YQPPTVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEGEEEELGEEY 186
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A7S2X5D0_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2X5D0_PROMC) HSP 1 Score: 176 bits (446), Expect = 9.720e-48 Identity = 85/97 (87.63%), Postives = 93/97 (95.88%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPPTVVPGGDLA+VQRAVCM++N+TAIAE SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA+GE +ED+GEEY
Sbjct: 35 YQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRVDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETADGEEGQEDYGEEY 131
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A662YHN3_9STRA (Tubulin_C domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHN3_9STRA) HSP 1 Score: 176 bits (446), Expect = 1.610e-46 Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPP+VVPGGDLARVQRAVCM++NT+AIAE SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGEGE+E GEEY
Sbjct: 124 YQPPSVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEGEDEMLGEEY 220
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A6G0SC45_9STRA (Tubulin_C domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0SC45_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.750e-46 Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPP+VVPGGDLARVQRAVCM++NT+AIAE SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAE + ++EDFGEEY
Sbjct: 57 YQPPSVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEADMKDEDFGEEY 153
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A7S2RG20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG20_9STRA) HSP 1 Score: 171 bits (433), Expect = 2.030e-46 Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = -1
Query: 2723 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGE 3007
YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG E+ +G GEE DF E
Sbjct: 6 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMESTDGAGEE-DFDE 99
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Match: A0A6G0R1R0_9STRA (Tubulin_C domain-containing protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0R1R0_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.800e-46 Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = -1
Query: 2717 YQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAEGEGEEEDFGEEY 3007
YQPP+VVPGGDLARVQRAVCM++NT+AIAE SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV AETAEGE EE FGEEY
Sbjct: 25 YQPPSVVPGGDLARVQRAVCMISNTSAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVSAETAEGEDEE--FGEEY 119 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.432.1 >prot_Ecto-sp6_S_contig10.432.1 ID=prot_Ecto-sp6_S_contig10.432.1|Name=mRNA_Ecto-sp6_S_contig10.432.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=480bp MLRLRQTDGSDVFQWVDSRMDDAEIAEAASRCVLLHGLFEVWGHGRNREDback to top mRNA from alignment at Ecto-sp6_S_contig10:153824..159746+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.432.1 ID=mRNA_Ecto-sp6_S_contig10.432.1|Name=mRNA_Ecto-sp6_S_contig10.432.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5923bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:153824..159746+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:153824..159746+ >mRNA_Ecto-sp6_S_contig10.432.1 ID=mRNA_Ecto-sp6_S_contig10.432.1|Name=mRNA_Ecto-sp6_S_contig10.432.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1440bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:153824..159746+ (Ectocarpus species6 EcLAC_371)back to top |