mRNA_Ecto-sp6_S_contig10.427.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.427.1
Unique NamemRNA_Ecto-sp6_S_contig10.427.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.427.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 736 bits (1901), Expect = 7.040e-266
Identity = 399/410 (97.32%), Postives = 400/410 (97.56%), Query Frame = 1 
Query:    1 MFLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQFDANRRCTTPFHVQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPTKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDAPPLRQGQEKSGQRSYSSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIRIPENKAEVGTGTPLRKSSPMRSPSPGGGSRRHTGSGGEGGRGAGSVFAERLLSAASGSARRGSSGLTRSXXXXXXXXXXXQTQGVARVTTAGTEGFVKKTASSEDCTRQSPGEGGPGSARLSRGQSPAERRSNDQLTLDLATIRSL 1230
            MFLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQFDANRRCTTPFHVQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDP KTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDD PPLRQGQEKSGQRS SSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIR PENKAEVGTGTPLRKSSPMRSPSPGGGSRRHTGSGGEGGRGAGSVFAERLLSA SGSARRGS GLTR XXXXXXXXXXX TQGVAR TTAGTEGFVKKTAS EDCTR+SPGEGGPGSARLSRGQSPAERRSNDQLTLDLATIRSL
Sbjct:    1 MFLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQFDANRRCTTPFHVQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDTPPLRQGQEKSGQRSCSSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIRSPENKAEVGTGTPLRKSSPMRSPSPGGGSRRHTGSGGEGGRGAGSVFAERLLSATSGSARRGSRGLTRXXXXXXXXXXXXXTQGVARATTAGTEGFVKKTASPEDCTRRSPGEGGPGSARLSRGQSPAERRSNDQLTLDLATIRSL 410
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G928_ECTSI7.040e-26697.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:129559..131873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score745.3
Seed ortholog evalue1.5e-212
Seed eggNOG ortholog2880.D7G928
Model size1446
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2EXPF@1,2SZAY@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Cds size1233
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348695.3552628-CDS-Ecto-sp6_S_contig10:129558..1298071682348695.3552628-CDS-Ecto-sp6_S_contig10:129558..129807Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 129559..129807 +
1682348695.3703933-CDS-Ecto-sp6_S_contig10:130392..1304841682348695.3703933-CDS-Ecto-sp6_S_contig10:130392..130484Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 130393..130484 +
1682348695.3792195-CDS-Ecto-sp6_S_contig10:130768..1316601682348695.3792195-CDS-Ecto-sp6_S_contig10:130768..131660Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 130769..131660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348695.3866665-UTR-Ecto-sp6_S_contig10:131660..1318731682348695.3866665-UTR-Ecto-sp6_S_contig10:131660..131873Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 131661..131873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.427.1prot_Ecto-sp6_S_contig10.427.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 129559..131660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.427.1

>prot_Ecto-sp6_S_contig10.427.1 ID=prot_Ecto-sp6_S_contig10.427.1|Name=mRNA_Ecto-sp6_S_contig10.427.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=411bp
MFLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQR
LGSLDKRNGFNLITGQFDANRRCTTPFHVQPRTRETGSLSEVAERAEYLL
LRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAG
ANDMFSKSIYDPTKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDAP
PLRQGQEKSGQRSYSSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAP
CKRLCGSRSTPTIRIPENKAEVGTGTPLRKSSPMRSPSPGGGSRRHTGSG
GEGGRGAGSVFAERLLSAASGSARRGSSGLTRSHSDFGGSSGRGQTQGVA
RVTTAGTEGFVKKTASSEDCTRQSPGEGGPGSARLSRGQSPAERRSNDQL
TLDLATIRSL*
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mRNA from alignment at Ecto-sp6_S_contig10:129559..131873+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.427.1 ID=mRNA_Ecto-sp6_S_contig10.427.1|Name=mRNA_Ecto-sp6_S_contig10.427.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2315bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:129559..131873+ (Ectocarpus species6 EcLAC_371)
ATGTTCCTGAAGGGGCTTTCTACGACCCGGTTCCACCAAGGGTTCCAACG
GCGGAAGCAGTCGAATATCAGGCAGGATGAGTCGAGACTGCAAAGAGAGG
CCTTGAAGCAGCACATGAGCGTGCTCCACCTCGAAAGACGGCGGCAGAGA
CTTGGCAGTCTCGACAAGCGTAACGGTTTTAACCTCATCACGGGACAGTT
CGACGCCAATCGTCGATGCACGACACCGTTCCATGTGCAGCCTAGGACGG
TGAGTCGATACTCCACGCCGAACGTTCGCTGTTCGTTTATGTGGTACACT
ACAGTAGTAACACAGCTAGCCGCAAACGTGTCCCACCGAATTAGGACGTG
CTGATACACGCAGTGCAATACCCAAAAGTCGACCAGGAGCGTATTTCCCG
CGGAACGATCGTGATGTTGGTTCTGTACTACAACTGTGTAACCTGCCAGC
GACGAGAAAAGTACAACTAACTGAGGAACGGCGCCACTGGGACGTATACA
GCGGCTGAACCCGAATCTTTCAATTATCGCGAGAGCCTTGTTGTTATGGA
GGAACAGAGAAATAAAAGAGGGAAGGGAGCAGGTCCGCTGCTCCTCGCTG
GTTCACTCACAGTTGTCGTTGTATTTCATGTTTTATCCTCTTCATACCTA
GCCCGCGTTCCGCGCTCAAAAGTCGAGAGTGAGAACGGGGGTTGGAATCT
CAGTCACAACAACTAGCGAAAATACACAATATCCACGTCATGATCATATA
ACGCTCATACACTAGTTGCTCCATTACATTGTGGCGTGCCGTTCCTTCTC
CTCAACTACATGACATGTTGTCATTTTTTCGCAGAGGGAGACGGGGTCGT
TGTCCGAAGTAGCGGAGCGCGCGGAATACCTTCTCCTCCGTGATTCGGAG
TACAAATTTCACGCACCTGCCTGGAGGTGAGCCGTGTGGTTGGCGCATGC
TGCTGTGTAGCACGTGGGTTGGCTACTCCTCTTGGTCATTTGATCCGGGA
CTGGCCTAGTGTAGCGACGACCCCTCGGCAGCTGTTGTTGCCTCCACCGT
CTGCCAACATCTAAGGAACGGTGTACACACACACAACAAGGGCTGATAAT
CTAAACGATCGCTCTACTGTATCACCTCCAATGTCTGGAAACTCCGCTGG
CCATCTCGTTCTGCAATCCCCAAACAATCTATTTATTGCCCCGTTTGATA
ATAACTGCAGCGGCAAGAACCACGACGAGCGCCAGGATCTCCTGCAGCGA
GAGGGCCTCAACAAGCCCAAGAAGTCCACCCTCCTCGGGGTAGGAACTGC
CGATCTCGCGTCGGCAGGTGCCAACGACATGTTTTCGAAATCGATATACG
ACCCCACTAAGACGTGCGCCGTCGAGGGTCTAGTGGAAACGTGCTTCCCA
GGGCGCTACACGCCGCGCAAGGTGACCTCGGCTCGACGGGCGGCAGCCGC
ATCACGCGACGATGCTCCTCCGCTAAGGCAGGGACAAGAAAAAAGTGGCC
AACGGTCGTACTCGTCGCCAGGTGCCTTGGACACCGTGTTTCGAGTCGTC
CCGAACGGGCTCGGAAACCACAGCACCGTTGGGGGTCGAGGTGGGGCGAC
TGTTGCCGGGATCGCACCTTGCAAACGGCTCTGCGGGTCGCGCAGCACCC
CGACCATACGGATCCCGGAGAACAAGGCGGAAGTGGGCACAGGCACACCA
CTCCGGAAGTCTTCCCCCATGCGATCGCCAAGTCCGGGAGGTGGTAGCAG
AAGGCACACGGGTAGTGGGGGAGAAGGTGGCCGGGGTGCTGGGTCGGTTT
TTGCAGAGAGGCTTCTCTCCGCTGCAAGCGGAAGCGCGAGGAGGGGGAGC
AGCGGACTGACTCGTTCGCATTCGGACTTTGGAGGGAGCAGCGGCAGGGG
GCAGACTCAAGGGGTAGCAAGAGTCACGACAGCAGGAACGGAGGGCTTCG
TTAAAAAAACGGCTTCTTCTGAAGATTGTACGCGACAGTCCCCGGGTGAG
GGCGGGCCGGGGTCAGCGCGCTTGTCAAGAGGACAGAGCCCGGCGGAGCG
GAGAAGCAACGACCAGCTGACCTTGGACTTGGCTACCATCCGATCCCTGT
AGAGCCTTTTACAGCAGGCGGTAGTAGCCTGCAGTGTTTTCTTCTCGTCT
GCAGAGCGTGCCAGAGATGCCTGATGCCTGACTTGTAATTGCACTCGGTA
TGCGATGTTCTCTGGAGACCCGCGTCCTGCCTGTTGAACATCGGAGCATG
ATTTTATCAACTACTTCGCGACGCCCCCCCCCGAGGGCCCGACACGTGCT
ACAACCTAGAAACGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:129559..131873+

>mRNA_Ecto-sp6_S_contig10.427.1 ID=mRNA_Ecto-sp6_S_contig10.427.1|Name=mRNA_Ecto-sp6_S_contig10.427.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:129559..131873+ (Ectocarpus species6 EcLAC_371)
ATGTTCCTGAAGGGGCTTTCTACGACCCGGTTCCACCAAGGGTTCCAACG
GCGGAAGCAGTCGAATATCAGGCAGGATGAGTCGAGACTGCAAAGAGAGG
CCTTGAAGCAGCACATGAGCGTGCTCCACCTCGAAAGACGGCGGCAGAGA
CTTGGCAGTCTCGACAAGCGTAACGGTTTTAACCTCATCACGGGACAGTT
CGACGCCAATCGTCGATGCACGACACCGTTCCATGTGCAGCCTAGGACGA
GGGAGACGGGGTCGTTGTCCGAAGTAGCGGAGCGCGCGGAATACCTTCTC
CTCCGTGATTCGGAGTACAAATTTCACGCACCTGCCTGGAGCGGCAAGAA
CCACGACGAGCGCCAGGATCTCCTGCAGCGAGAGGGCCTCAACAAGCCCA
AGAAGTCCACCCTCCTCGGGGTAGGAACTGCCGATCTCGCGTCGGCAGGT
GCCAACGACATGTTTTCGAAATCGATATACGACCCCACTAAGACGTGCGC
CGTCGAGGGTCTAGTGGAAACGTGCTTCCCAGGGCGCTACACGCCGCGCA
AGGTGACCTCGGCTCGACGGGCGGCAGCCGCATCACGCGACGATGCTCCT
CCGCTAAGGCAGGGACAAGAAAAAAGTGGCCAACGGTCGTACTCGTCGCC
AGGTGCCTTGGACACCGTGTTTCGAGTCGTCCCGAACGGGCTCGGAAACC
ACAGCACCGTTGGGGGTCGAGGTGGGGCGACTGTTGCCGGGATCGCACCT
TGCAAACGGCTCTGCGGGTCGCGCAGCACCCCGACCATACGGATCCCGGA
GAACAAGGCGGAAGTGGGCACAGGCACACCACTCCGGAAGTCTTCCCCCA
TGCGATCGCCAAGTCCGGGAGGTGGTAGCAGAAGGCACACGGGTAGTGGG
GGAGAAGGTGGCCGGGGTGCTGGGTCGGTTTTTGCAGAGAGGCTTCTCTC
CGCTGCAAGCGGAAGCGCGAGGAGGGGGAGCAGCGGACTGACTCGTTCGC
ATTCGGACTTTGGAGGGAGCAGCGGCAGGGGGCAGACTCAAGGGGTAGCA
AGAGTCACGACAGCAGGAACGGAGGGCTTCGTTAAAAAAACGGCTTCTTC
TGAAGATTGTACGCGACAGTCCCCGGGTGAGGGCGGGCCGGGGTCAGCGC
GCTTGTCAAGAGGACAGAGCCCGGCGGAGCGGAGAAGCAACGACCAGCTG
ACCTTGGACTTGGCTACCATCCGATCCCTGTAG
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