mRNA_Ecto-sp6_S_contig1.111.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig1.111.1
Unique NamemRNA_Ecto-sp6_S_contig1.111.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig1.111.1 vs. uniprot
Match: D7FLG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLG9_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.320e-69
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 KKKELKPIRLQGYVKLQVHIQKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKA 315
            KKK+LKPIRLQGYVKLQVHIQKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKA
Sbjct:   12 KKKDLKPIRLQGYVKLQVHIQKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKA 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig1.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLG9_ECTSI1.320e-6999.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig1contigEcto-sp6_S_contig1:1328835..1329654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size321
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348659.5013766-CDS-Ecto-sp6_S_contig1:1328834..13290921682348659.5013766-CDS-Ecto-sp6_S_contig1:1328834..1329092Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1328835..1329092 -
1682348659.5174341-CDS-Ecto-sp6_S_contig1:1329591..13296541682348659.5174341-CDS-Ecto-sp6_S_contig1:1329591..1329654Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1329592..1329654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig1.111.1prot_Ecto-sp6_S_contig1.111.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig1 1328835..1329654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig1.111.1

>prot_Ecto-sp6_S_contig1.111.1 ID=prot_Ecto-sp6_S_contig1.111.1|Name=mRNA_Ecto-sp6_S_contig1.111.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
KKKELKPIRLQGYVKLQVHIQKFLKPAMWLPGLRYPHNWWETWSVATADP
EVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMI
CVSKAS*
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mRNA from alignment at Ecto-sp6_S_contig1:1328835..1329654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig1.111.1 ID=mRNA_Ecto-sp6_S_contig1.111.1|Name=mRNA_Ecto-sp6_S_contig1.111.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=820bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1328835..1329654- (Ectocarpus species6 EcLAC_371)
AAGAAGAAGGAGCTCAAACCAATCCGGCTACAAGGCTACGTTAAACTCCA
GGTTCACATTCAGGTGCGTGGCGTCGAACAACCAAACCTCCGCGCGCCTC
GCCCGCCATTCATTCCGTGCGGTGTCGCCGCTGCATCTTGCACCACCTCT
TTCTTCCGTGCTCGAAACACCGACTTGACATCTTGATCGCTCCGCGACGA
GAGAAGAGCATGCCAAACATCAAATGATACTTTTTCGGAAAGCTCCCGTC
GAGACCGCTCGTTCCAATTCCGCCATTTTCGGCACCGTCATATATTGGGG
GATCTTCATGGTGATGTGGCCGTGCGTCCCTTGAAAGGCAGCCTCGTCGA
ACCCCGTCCGGTGTGCCCCGCAAGACTGCCGAGGCGGGGTGCCGAAAAAA
TATTTCTGCTCCGGGTGGAGTGAAAGCCCTACGTCTATCTCGATAATTGA
ACATTTTTTTTTTTTTTTGCCGTTTCGCCAGCTGATATTCGGACTACACC
AACGCAGCCACTTTTTCCTGTCCCCGGGACCCCCCACCTACCCGCCACCT
CACTCACTCCAGAAATTTCTCAAGCCAGCGATGTGGCTACCGGGGCTCCG
CTACCCCCACAACTGGTGGGAGACGTGGAGCGTAGCGACGGCGGACCCGG
AGGTGTGCGTGCGAGACATGGGACGAGCGATCGAGAACGTGGCGATAGCT
GCGGAGTCGTCGGAGGGGATAGGGGACGGGCAGATGGTGTTCCAGCTCGC
GTCGCTGCGCTACTGCGCGGAGGAGGGGGTGGGGTATGCGAAGATGATCT
GCGTGTCGAAGGCGAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig1:1328835..1329654-

>mRNA_Ecto-sp6_S_contig1.111.1 ID=mRNA_Ecto-sp6_S_contig1.111.1|Name=mRNA_Ecto-sp6_S_contig1.111.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1328835..1329654- (Ectocarpus species6 EcLAC_371)
AAGAAGAAGGAGCTCAAACCAATCCGGCTACAAGGCTACGTTAAACTCCA
GGTTCACATTCAGAAATTTCTCAAGCCAGCGATGTGGCTACCGGGGCTCC
GCTACCCCCACAACTGGTGGGAGACGTGGAGCGTAGCGACGGCGGACCCG
GAGGTGTGCGTGCGAGACATGGGACGAGCGATCGAGAACGTGGCGATAGC
TGCGGAGTCGTCGGAGGGGATAGGGGACGGGCAGATGGTGTTCCAGCTCG
CGTCGCTGCGCTACTGCGCGGAGGAGGGGGTGGGGTATGCGAAGATGATC
TGCGTGTCGAAGGCGAGTTAA
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