mRNA_Ecto-sp6_S_contig1.109.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig1.109.1
Unique NamemRNA_Ecto-sp6_S_contig1.109.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: D7FLH2_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH2_ECTSI)

HSP 1 Score: 665 bits (1717), Expect = 7.960e-231
Identity = 390/451 (86.47%), Postives = 396/451 (87.80%), Query Frame = 1 
Query:  547 LLASAGVPRQQSDNGCVASGLGWGGGVTSPGAAAVAVSPNRRLGVAHPTAAALPGTSGLPTQSTADTSQQSAEEQQQPAPAPTTVASSAGPAAADVPQDISSSTGSEQDSYXXXXXXXXXGRAKESRSRTGXXXXXXXRGGHGGDVGGRSRSRRARESALPSGTRIPPDVVPSLSEAELETSDAGHVLQGIDKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXX---VGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCRE 1890
            LLAS G PRQQ+DNG VASGLGWGGG TSPGAAAVAVSP RRLGVAHPTAAA+PGTSGLPTQ TADTSQQSAEEQQQPAP  TT+AS+AGP   DVPQ             XXXXXXXXX           XXX    RGGHGGDVGGRSRSRRARESALPSGTRIPPDVVPSLSEAELETSDAG+VLQGIDKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTS XXXXXXXXXX              VGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRG+MTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPA QRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCRE
Sbjct:  185 LLASVGTPRQQNDNGRVASGLGWGGGATSPGAAAVAVSP-RRLGVAHPTAAAIPGTSGLPTQPTADTSQQSAEEQQQPAPXXTTLASAAGPXXXDVPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASRGGHGGDVGGRSRSRRARESALPSGTRIPPDVVPSLSEAELETSDAGYVLQGIDKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSAXXXXXXXXXXDRRSNDSPGCGGGGVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGMMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAVQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCRE 634
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: UPI0005D455C9 (ATPase family AAA domain-containing protein 1-A n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D455C9)

HSP 1 Score: 195 bits (496), Expect = 7.880e-53
Identity = 106/258 (41.09%), Postives = 153/258 (59.30%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D VA D+++ D + VTFE + G+E +K  L E+I  PL  P      +L+ P  G+L+YGPPG GKTL+A+A+A++SG+ F++V+ S LM                          G +  +V AVF+LA K+QP I+F+DE D L  +R   ++     + TE M LWD L+    DR  R++VLAATNRPWDLD A  RRFSR+F+VGLP+   R  ++   L    V +  D+ ++A+ TEG+S  D+ ELCR+A
Sbjct:   67 DMVACDVINPDEIKVTFEAVGGLEKVKEDLHELIILPLQRPLLFLRGKLLAPQKGVLLYGPPGTGKTLLAKAIARESGSVFINVRVSNLMSK----------------------WFGDAQKLVTAVFTLAYKLQPAIIFIDEVDSLLGQRRNTEQETLTNMKTEFMTLWDGLTT---DRNARIMVLAATNRPWDLDEAILRRFSRAFEVGLPNASERATIMRVILNGENVADDIDYTKIALLTEGFSGSDLKELCRQA 299
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A830CBE5_9LAMI (ATPase family aaa domain-containing protein 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CBE5_9LAMI)

HSP 1 Score: 194 bits (492), Expect = 9.480e-52
Identity = 106/258 (41.09%), Postives = 157/258 (60.85%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D VA D+V+ D +DV F+ I G++A+K++L E++  PL  P      +L+ P  G+L+YGPPG GKT++A+A+AK+SGA F++V+ + LM                          G +  +V AVFSLA K+QP I+F+DE D    +R+  D      + TE M LWD  +    D+  RV+VLAATNRP +LD A  RR  +SF++G+PDRK R A+L   L+D +VE+G D+  +A   EGY+  D++ELC++A
Sbjct:   68 DVVACDVVNPDHIDVKFDSIGGLDAIKQALYELVILPLKRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIANLMSK----------------------WFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRKSTDHEALTNMKTEFMALWDGFTT---DQHARVMVLAATNRPSELDEAILRRLPQSFEIGMPDRKDRVAILKVVLKDEKVEDGIDYDRIAGLCEGYTGSDLIELCKKA 300
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A6I9THZ4_SESIN (ATPase family AAA domain-containing protein 1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9THZ4_SESIN)

HSP 1 Score: 192 bits (488), Expect = 1.760e-51
Identity = 104/258 (40.31%), Postives = 157/258 (60.85%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D +A D+V+ D +DV F+ I G++A+K++L E++  PL  P      +L+ P  G+L+YGPPG GKT++A+A+AK+SGA F++V+ S LM                          G +  +V AVFSLA K+QP I+F+DE D    +R+  D      + TE M LWD  +    D+  RV+VLAATNRP +LD A  RR  ++F++G+PDRK R A+L   L+D +VE+G D+  +A   +GY+  D++ELC++A
Sbjct:   78 DVIACDVVNPDHIDVKFDSIGGLDAIKQALYELVILPLRRPELFAHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK----------------------WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRKSTDHEALTNMKTEFMALWDGFTT---DQDARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRKERVAILKVILKDEKVEDGIDYDHIAALCDGYTGSDLLELCKKA 310
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A6P8D604_PUNGR (ATPase family AAA domain-containing protein 1 isoform X2 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8D604_PUNGR)

HSP 1 Score: 190 bits (483), Expect = 3.880e-51
Identity = 105/258 (40.70%), Postives = 155/258 (60.08%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D +A D+V+ D +DV FE I G+E +K++L E++  PL  P      +L+ P  G+L+YGPPG GKT++A+A+AK+SGA F++V+ S LM                          G +  +V AVFSLA K+QP I+F+DE D    +R+  D      + TE M LWD  +    D+  RV+VLAATNRP +LD A  RRFS++F++G+PD++ R A+L   L+   VE+  D+  LA   EGY+  D++ELC++A
Sbjct:   67 DVIACDVVNPDHIDVEFESIGGLETVKQALFELVILPLRRPDLFSHGKLLSPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK----------------------WFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRKTSDHEALTNMKTEFMALWDGFTT---DQSARVMVLAATNRPSELDEAILRRFSQAFEIGMPDQRERAAILKVILKGERVEDDIDFDYLASLCEGYTGSDILELCKKA 299
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A6T6CI72_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CI72_9RHOD)

HSP 1 Score: 192 bits (488), Expect = 7.560e-51
Identity = 107/266 (40.23%), Postives = 151/266 (56.77%), Query Frame = 1 
Query: 1108 LQGIDK----VAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            LQG+ +    V  ++V  + + V FEDI G++ +K +L+E++  P   P       L+ P  G+L+YGPPG GKT++A+AVAK+  A FL++  STL+                         VG S  +VRAVFS A +VQPCI+F+DE + L   R E    V RG+  E +QLWD L  S     + +V+L ATNRPWD+D A QRR  R+F VGLP+ + R ++L K L+   ++ G D   +A  T GYS  D+ ELCR A
Sbjct:  131 LQGLSRFEMTVLTEVVFPEEISVGFEDIGGLDDVKEALKEVVIYPFSRPDIFMRGSLLSPPKGVLLYGPPGTGKTMLAKAVAKECNARFLTLSPSTLLSK----------------------WVGDSENLVRAVFSFAERVQPCIIFIDEVEALFQDRGEASHGVERGMKAEFLQLWDGLLTS---ESNSIVILGATNRPWDIDSAIQRRMPRAFLVGLPEEQQRLSILTKVLKGTPLDRGMDLAAVAQATAGYSGSDLKELCRTA 371
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A7S1TJJ1_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJJ1_9RHOD)

HSP 1 Score: 191 bits (486), Expect = 8.500e-51
Identity = 106/252 (42.06%), Postives = 152/252 (60.32%), Query Frame = 1 
Query: 1153 RLDVTFEDIAGMEAMKRSLQEIISEPLD---LPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDR--QDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            ++   F+D+ G+   K+ L+E+I  PL+   L      A L++P  G L++GPPG GKT++A+A+AK+SGA FL++  S+L+                         +G S+ +VRA FSLA +++PCI+F+DE D L  +R  GD  V R +  E +QLWD +  SG       RV+VL ATNRPW+LDPA QRR  R+F+V LPD   R+AVL   L  V +E  F+W E+A++TEG+S  D+ ELCR A
Sbjct:  105 QISTGFDDVGGLFETKKQLRELIIAPLEHAELFARAQNAALLQPPKGALLFGPPGTGKTMLAKALAKESGARFLNLAPSSLL----------------------DKYMGESNALVRAAFSLAERLEPCIIFIDEMDALFRERTSGDHEVYRDMKAEFLQLWDGILSSGGSSGLPPRVLVLGATNRPWELDPAVQRRMPRAFKVDLPDVTERRAVLQTLLGGVSLEAVFNWTEIALETEGFSGSDLKELCRAA 334
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: S8C5Y8_9LAMI (AAA domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C5Y8_9LAMI)

HSP 1 Score: 186 bits (471), Expect = 4.300e-50
Identity = 103/258 (39.92%), Postives = 151/258 (58.53%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D +A D+ + D LDV FE I G++ +K +L E++  PL  P      +L+ P  G+L+YGPPG GKT++A+A+AK+SG+ F++V+ S LM                          G +  +V A+FSLA K+QP IVF+DE DG   +R+  D      + TE M LWD  +    D   RV+VLAATNRP +LD A  RRF +SF++G+PD K R  +L   L+D +VEEG D+  +A    G +  D++E+C++A
Sbjct:   62 DVIACDVANPDDLDVRFESIGGLDGIKEALFELVILPLKRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGSVFINVRLSNLMSK----------------------WFGDAQKLVAAIFSLAYKLQPAIVFIDEVDGFLGQRKSSDHEAMANMKTEFMALWDGFTT---DEHARVMVLAATNRPSELDEAVLRRFPQSFEIGIPDHKSRVDILKVILKDEKVEEGIDYGWIAGLCNGQTGSDLLEICKKA 294
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A251UYH9_HELAN (Putative ATPase, AAA-type, core, P-loop containing nucleoside triphosphate hydrolase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UYH9_HELAN)

HSP 1 Score: 187 bits (474), Expect = 4.340e-50
Identity = 104/258 (40.31%), Postives = 151/258 (58.53%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D +A ++++ D +DV F  I G+EA+K+SL E++  PL  P      +L+ P  G+L+YGPPG GKT++A+A+AK+SGA F++V+ S LM                          G +  +V AVFSLA K+QP I+F+DE D    +R   D      + TE MQLWD  +    D+  RV+VLAATNRP +LD A  RR  ++F++G+PDRK R  +L   L+   VEE  D   +A   EGY+  D++ELC++A
Sbjct:   67 DVIACNVINPDHIDVEFNSIGGLEAIKQSLYELVILPLRRPELFSYGKLLAPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISDLMSK----------------------WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMQLWDGFTT---DQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRKERADILKVILKGERVEEDIDLDSIAALCEGYTGSDLLELCKQA 299
[Close]
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Match: A0A2Z7A6W6_9LAMI (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7A6W6_9LAMI)

HSP 1 Score: 187 bits (475), Expect = 5.650e-50
Identity = 102/258 (39.53%), Postives = 156/258 (60.47%), Query Frame = 1 
Query: 1120 DKVAADLVDCDRLDVTFEDIAGMEAMKRSLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSXXXXXXXXXXXXXXXXXXXXXXVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQDRQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDVEVEEGFDWRELAVKTEGYSCGDVVELCREA 1893
            D VA D+V+ D +DV F+ I G++A+K+SL E++  PL  P      +L+ P  G+L+YGPPG GKT++A+A+AK+SGA F++V+ S LM                          G +  +V AVF+LA K+QP I+F+DE D    +R+  D      + TE M LWD  +    DR  +V+VLAATNRP +LD A  RR  ++F++G+PDR+ R A+L   L++  +E+G D+  +A   +GY+  D++ELC++A
Sbjct:   67 DVVACDVVNPDHIDVKFDSIGGLDAIKQSLYELVILPLRRPELFSHGKLLCPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK----------------------WFGDAQKLVAAVFTLAYKLQPAIIFIDEVDSFLGQRKTTDHEALTNMKTEFMALWDGFTT---DRNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAAILKVILKNETIEDGIDYDRIASLCDGYTGSDLLELCKKA 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig1.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLH2_ECTSI7.960e-23186.47AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0005D455C97.880e-5341.09ATPase family AAA domain-containing protein 1-A n=... [more]
A0A830CBE5_9LAMI9.480e-5241.09ATPase family aaa domain-containing protein 1 n=1 ... [more]
A0A6I9THZ4_SESIN1.760e-5140.31ATPase family AAA domain-containing protein 1 n=1 ... [more]
A0A6P8D604_PUNGR3.880e-5140.70ATPase family AAA domain-containing protein 1 isof... [more]
A0A6T6CI72_9RHOD7.560e-5140.23Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1TJJ1_9RHOD8.500e-5142.06Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
S8C5Y8_9LAMI4.300e-5039.92AAA domain-containing protein (Fragment) n=1 Tax=G... [more]
A0A251UYH9_HELAN4.340e-5040.31Putative ATPase, AAA-type, core, P-loop containing... [more]
A0A2Z7A6W6_9LAMI5.650e-5039.53P-loop containing nucleoside triphosphate hydrolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig1contigEcto-sp6_S_contig1:1311869..1317277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score676.8
Seed ortholog evalue9.8e-192
Seed eggNOG ortholog2880.D7FLH2
Model size1894
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0737@2759
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-17_001190.1
Cds size1890
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig1.109.1prot_Ecto-sp6_S_contig1.109.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig1 1311869..1317274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348659.277177-CDS-Ecto-sp6_S_contig1:1311868..13120421682348659.277177-CDS-Ecto-sp6_S_contig1:1311868..1312042Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1311869..1312042 -
1682348659.287879-CDS-Ecto-sp6_S_contig1:1312788..13129121682348659.287879-CDS-Ecto-sp6_S_contig1:1312788..1312912Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1312789..1312912 -
1682348659.2958076-CDS-Ecto-sp6_S_contig1:1313565..13139031682348659.2958076-CDS-Ecto-sp6_S_contig1:1313565..1313903Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1313566..1313903 -
1682348659.3050954-CDS-Ecto-sp6_S_contig1:1314092..13142241682348659.3050954-CDS-Ecto-sp6_S_contig1:1314092..1314224Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1314093..1314224 -
1682348659.315572-CDS-Ecto-sp6_S_contig1:1314881..13149201682348659.315572-CDS-Ecto-sp6_S_contig1:1314881..1314920Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1314882..1314920 -
1682348659.3268414-CDS-Ecto-sp6_S_contig1:1315003..13152241682348659.3268414-CDS-Ecto-sp6_S_contig1:1315003..1315224Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1315004..1315224 -
1682348659.3441966-CDS-Ecto-sp6_S_contig1:1316412..13172741682348659.3441966-CDS-Ecto-sp6_S_contig1:1316412..1317274Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1316413..1317274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348659.352587-UTR-Ecto-sp6_S_contig1:1317274..13172771682348659.352587-UTR-Ecto-sp6_S_contig1:1317274..1317277Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig1 1317275..1317277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig1.109.1

>prot_Ecto-sp6_S_contig1.109.1 ID=prot_Ecto-sp6_S_contig1.109.1|Name=mRNA_Ecto-sp6_S_contig1.109.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=630bp
MTAIQAADATDSAAAAATMPAAGTAGRHRRRPAASASAATTTHTAVLLAW
WVVACLASAAPSASAAAAAEVPSRTPPVRHFPDQQRRNPHFGGAAVADPV
TTTAPGDRNTQPTTTAGATIGGAPRPETVHAARRHRRRGDGGPIPAANTA
AVYNGRPAGDDGAVALARRAGNGGGAARPRTLLASAGVPRQQSDNGCVAS
GLGWGGGVTSPGAAAVAVSPNRRLGVAHPTAAALPGTSGLPTQSTADTSQ
QSAEEQQQPAPAPTTVASSAGPAAADVPQDISSSTGSEQDSYQQHQQQRE
KGRAKESRSRTGSGRAGASRGGHGGDVGGRSRSRRARESALPSGTRIPPD
VVPSLSEAELETSDAGHVLQGIDKVAADLVDCDRLDVTFEDIAGMEAMKR
SLQEIISEPLDLPTDLYPARLIKPCTGILIYGPPGCGKTLIARAVAKQSG
AAFLSVKASTLMRTSGGGGGGGSDRRSNDSPGGGGGGVGHSSVMVRAVFS
LARKVQPCIVFLDEADGLCYKREEGDRAVNRGVMTELMQLWDELSCSGQD
RQDRVVVLAATNRPWDLDPAAQRRFSRSFQVGLPDRKMRKAVLMKALEDV
EVEEGFDWRELAVKTEGYSCGDVVELCREA
back to top

mRNA from alignment at Ecto-sp6_S_contig1:1311869..1317277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig1.109.1 ID=mRNA_Ecto-sp6_S_contig1.109.1|Name=mRNA_Ecto-sp6_S_contig1.109.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5409bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1311869..1317277- (Ectocarpus species6 EcLAC_371)
GTGATGACCGCGATCCAAGCGGCTGATGCAACTGATTCGGCAGCCGCAGC
CGCGACAATGCCAGCGGCAGGGACCGCAGGCCGCCACCGCCGACGGCCAG
CAGCTTCGGCCTCTGCTGCTACCACCACGCACACGGCGGTGCTTCTCGCG
TGGTGGGTGGTAGCATGCCTCGCTTCCGCGGCGCCCTCCGCTTCGGCAGC
AGCAGCAGCAGAAGTGCCTAGCCGAACGCCGCCGGTCCGCCATTTTCCCG
ACCAGCAGCGGAGAAACCCGCATTTCGGCGGCGCGGCGGTCGCCGACCCC
GTAACGACGACAGCACCGGGAGACCGAAATACGCAACCCACGACCACCGC
AGGAGCCACCATCGGTGGTGCCCCACGACCGGAGACGGTCCATGCAGCTC
GCCGGCACCGGCGGCGTGGTGATGGTGGTCCTATACCGGCTGCGAACACA
GCAGCAGTATATAACGGCCGGCCCGCTGGTGACGACGGCGCTGTCGCATT
GGCCAGACGCGCCGGCAACGGCGGTGGTGCTGCAAGGCCGCGTACTCTGT
TGGCGAGCGCCGGGGTGCCTCGACAACAGAGCGACAACGGCTGCGTGGCG
TCGGGGTTGGGATGGGGGGGTGGGGTGACGTCGCCGGGAGCGGCGGCTGT
AGCGGTATCTCCTAATAGGCGACTGGGGGTGGCACACCCTACCGCAGCCG
CCCTACCCGGGACCAGCGGCTTGCCGACACAATCTACCGCCGACACCTCG
CAACAATCTGCTGAAGAGCAGCAACAACCCGCACCGGCACCGACGACTGT
CGCATCATCAGCGGGACCAGCAGCAGCTGATGTCCCACAAGACATCTCCA
GCTCAACAGGCTCTGGTGAGCTCAATGCGGAGCAAGTATGACATGGGACC
TGCCGTTAATGGTTATCTGCTTGTTGCACGTACATTTTGTTTCGTTGTGG
GCTAGGGGTCTAGTCCACATATGCAGCCAGCCGTTATTTCATACCGCTGC
TGCGGCGATACAAACGGACGGTGCCTTTCGATCTGTTCCTCAAACAGCCA
GCAAACAACCCAACAACCCGCGCTTCGTGGTTGGGCCGCCCTCTAGCTAG
ATGCATGCGTATCCTGCGCATGATAAACTCGCAACGGCACCAGCCCGAAG
TTCTAAACAACGATCGTTTTCATCACGTGTGGTCTACCGTACACATACAG
CGGTTGTCTGAACCTGTGCCCCGACTTCTTCGCCCAACTTCACCCTCTGA
TCCGCACCATGGCCGGCAATGTACATTGCCCTTGTTCCAGAAGATCCGCA
GCAAACCCCAGCGAACGTAGCGGCCGGGCGAGAATACAACGCAGAAGGAC
AGCCGCACACGTCAGCTGTAACGGCTGTGTCAGCGGAGCACGTCGGGGGG
GCGGGGATGGCTGCGAGAATGGCGTCTTGGGCGATGCCCGAGATACTTCG
TGCGGCGAAGGCATGGAAAGTTTGATCTGTAACCAGCCCCGCCTTTGGTA
GAATCATCGCATGCAAGATGCTTGTTCCGCGGAGTCTTGGTTGGGAGCAC
GGATCCACTCGATCCAATGCATGCGGTTCAACTTTGTGTAGATCGGGACA
TGATCGAGGCGGCAAGAAGAGGACACAGGCCGCGCTTGACGGGAACATCA
AGTTATGCCTTAGGGCATGGACGATGGGTGCAACACGCCGCCGCCAATTG
ATGATGCTTGCAGCAGCTATTTAGAGCGCGATGCTCCACGCAAACATGCT
CGTTATTCATCGCTGCTGGATTGTATGCATCCAGCCGAGGGGGCAAGCCC
ACAACATCCCGTATTATCTCGCACCCTACAACAGCGCAAGGAGACAGGCT
TCGCCAATCGCGAGGCTACAGCCACCTGTGACCCCCACTCGCCCCCTCCT
CCGCAACATGATCAAAGGTCTACAACAGCCAAACAAAGCATAAAAACTGA
GCCCCCAACATGGCGCAGCTATTAGCGGCAGCAGGGTTTGTTCTCCGCGC
TGCCCGATGGGTATCGGTGGGGTTTCGCGTGTTGGTGCTGCCTCGCCGAG
CAGAACAAGATAGTTACCAGCAGCATCAGCAGCAGCGAGAGAAAGGAAGA
GCGAAGGAGAGCAGGTCGAGGACGGGGAGCGGGAGAGCGGGGGCTAGCCG
CGGCGGTCATGGCGGCGACGTCGGCGGCCGATCACGAAGCCGGAGAGCCC
GGGAATCGGCCCTACCAAGCGGGACTAGGATTCCGCCGGACGTGGTGCCA
AGCCTGAGCGAGGCCGAGCTAGAGGTGAGGAAGCAATGACACTCACTCTT
ATTGAATGAGTTGAGCGTACGCCTGACACGGGGTGGGCATTCTGCGGAAG
GAGCCAGACCTCCGATGCTGGTCACGTTCTGCAGGGCATCGACAAGGTGC
TCGTTGCCGGGGTAAACATCGTGGGATGCGTCGGGCTGCTATGTACACGT
ATGCCTGCGAGACTACCATTCGCTGTCGAGGTCGGAAAATTCCGTGCACA
TCAAGCCGGCTAGGTAGGGCTGGCTCAGAAGGACCGTTTGTAAGGGTTTG
CGCGGCGGGTGGGTGGCCCGAACGGCCTTGCTCTCTTGCCGGCAAGGCCA
AGCAACGCCAGCTTCTATGGATACGCCGGCCAGTGCTGCCGCCACTATTG
CTGGAGTACAGCAGCACCCAGTCGTACCGATCCTAGGGTGTGAGACCTTA
AGTGTTCTCTACGGGACCTTCGTCTCACCCTAGACGAAGGCCGCCTGGCA
CGCAGAGTTATGACACATCGCGCGTCACAAGCCAACGGTTTCATTTTCTA
TCTTGTTTTTGATGCCACCGTCGGAGCTCTCCGTAAAATGATGGGCCCGG
TTTAGCAACCTCTAGTGTCAGGAGGGAAGATCGTCTCTATTTAGGAACAG
GTGGTGTAGCAGCTGTTAACCCGGGTGCAGCGGTGCAACCCGATTGTGTG
GTCGCTGAACAAGGCGTGTCGCTACACAGGGGGGGTGCTAAACCGGACCC
ACCCCTGCGCAAAACTTTGCCTTGCCGCCCCTGGCCCCTCTCGCGTATCC
AAGGTAGCAGCTGATCTCGTGGACTGCGATAGGCTCGACGTTACTTTCGA
GGACATCGCTGGCATGGAGGCCATGAAGCGATCTCTGCAGGAGATCATAT
CGGAGCCACTCGACCTCCCGACAGACTTGTACCCTGTGAGTGGATGGAGC
GCCGGCCACGCGTTGTAGTTTCTGCTCGAAGAGAAAAGCGCGTCGTTGTC
GTCATCGTCGTCTTTGTTGTTGTCTTTCAGCCCTCAGTCCTGCACTGGCA
TCACTGCGTGGCATACCCCCGTCATCACGACCTCCTCAACGCCCCCAGCA
CTACATGCCCCTCCCCATGCACAGGCACGTCTCATCAAGCCCTGTACCGG
AATTCTCATTTACGGACCCCCTGGCTGCGGGAAGACCCTCATCGCAAGAG
CGGTCGCCAAGCAGAGCGGCGCGGCCTTCCTGAGCGTCAAGGCCTCCACG
CTCATGAGGACATCCGGCGGCGGCGGCGGCGGCGGGAGCGACCGCCGGTC
AAATGACAGTCCCGGCGGTGGTGGCGGCGGGGTCGGGCACTCGAGTGTCA
TGGTCCGAGCCGTGTTCAGCCTTGCCCGGAAGGTCCAGCCCTGCATCGTC
TTCCTGGATGAGGCCGACGGCCTGTGCTACAAGCGCGAAGAGGGAGACAG
GGCGGTTAACAGGCGAGAAATATAATTTTATGAGAGAACGTGCGCGCGAC
GATTTTTCCTGGAACTTTCTTCCTTTCCGTGGGGCTGGGGAATGGTAGAA
CAATGTCGCGAGGACAAGGAGGAACTGCAGTCGTGGGCCCGGGCGGTGTG
CCAATCGCCTTGCACACCGCATCGGAGACCCCTCATCATTACGGACGTAG
GGTTACTTTTGGCGGTGCCCGTGGATTTAAGTACGTGGACTTCGCCCCCT
CTACAGCAATATTGGTCGCCACCGAACAAGGGCAGTGCCGTGCGGCAACC
GTCCAAGATATCGTACCTACCCTTCTCAAGGAAACCGTCGGCGAGTGCTA
ACCGGCTGTGCGATGTCGTGCGTTTTCCCGGTGAAACGAAACCTTCTTTT
TTTTGCGGAATGTTGTCGTGATTTCGCTCCTTTAGATTTGGCCATTCGGC
CGTTTTCTTACAAGGTGTTTTTTGTGGAAGTCCGTGCGTTTGCTCGCGAT
GCAAAGACGAAGAGTCGACGGTGCTCATCGACAGCAGTCACTCGTCGTGG
CCGATCCACTGCACAACAACAACGGCGCCGTCGAATAAACGCTAGCGCTG
TGCGTGTACGCGACCATCTCTCGAACAAACGCTCGGAAATCGCGCCTCCG
TGTGTGGTCTCGCAGAGGCGTGATGACGGAGCTGATGCAACTTTGGGACG
AGCTCTCCTGTTCGGGGCAGGACAGGCAGGACAGGGTGGTGGTGCTCGCC
GCCACGAATCGACCCTGGGACCTCGACCCGGCGGCGCAGGTATACAGCCG
TCCCCCGCTTAAGGATAGTCGCCCCCGCTTCATGGACAACCATCCCTAGA
GTATGGGCGCCAATATTTTGTGAGGTCCCTGGTTTAAGGACGGTCGTCTC
CGATTGAAGGAGAGTCGTCCCCGCTTCTAGGACCGTCGTCCCCGCTTTAA
GAACAACCATCCCTAAGGGCACCAATATTAAGTGCGGTCCCCGGTTTAAG
GACAGTCGTCCCCAAAGATGGTCGTCGCCACTTTAAGGACAACCATTTAT
AGGTAAGGGCACCAATACTAAGTGCGGTCCCAGATTTAAGGACGGTCGTC
TCCGATTGCAGGACAGCCGCCCCCTGCTTTAAGGGCAGTCTTCCCCGTAA
GGATACTCGTCTCCGTTGTAAACAACCATCCCTAGCGTAGGGCACCAATT
TTGAGTACGGCCCCCGGTTTCAGGACAGTCGTCCCTGCTTTAAGGACACC
AATGTTAAGGACGCTCAACCTTATTCTTCCCAATAGCAGGGTGCCTGGCA
GAATGAAAAAAGTAGGTCCTCAACAACATCGCATGTATTCCGAACATCTA
GAAAACTACCCTCCCCCGGCTAGGAGAAAGGTCGTGGAAGGCCCTCCTAA
CGTACCCGTCAGTGGAAATGTGGCGATGCGCGATCGATGGTGTAGGAACC
ACAAGGAAAAATATGACCATGAGTGCCCCCCGGGCATTCACCGACATACC
TGGTGCGTTTTTTGACGGTGGTTCTCGTCTCGCAGAGGCGTTTTTCTCGG
TCGTTCCAGGTGGGCTTGCCCGACCGCAAGATGCGGAAGGCGGTGCTGAT
GAAGGCTCTCGAGGACGTGGAGGTGGAGGAGGGTTTCGACTGGCGGGAGT
TGGCCGTCAAGACGGAGGGGTACAGCTGCGGGGACGTCGTGGAGCTCTGC
CGAGAGGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig1:1311869..1317277-

>mRNA_Ecto-sp6_S_contig1.109.1 ID=mRNA_Ecto-sp6_S_contig1.109.1|Name=mRNA_Ecto-sp6_S_contig1.109.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1890bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1311869..1317277- (Ectocarpus species6 EcLAC_371)
ATGACCGCGATCCAAGCGGCTGATGCAACTGATTCGGCAGCCGCAGCCGC
GACAATGCCAGCGGCAGGGACCGCAGGCCGCCACCGCCGACGGCCAGCAG
CTTCGGCCTCTGCTGCTACCACCACGCACACGGCGGTGCTTCTCGCGTGG
TGGGTGGTAGCATGCCTCGCTTCCGCGGCGCCCTCCGCTTCGGCAGCAGC
AGCAGCAGAAGTGCCTAGCCGAACGCCGCCGGTCCGCCATTTTCCCGACC
AGCAGCGGAGAAACCCGCATTTCGGCGGCGCGGCGGTCGCCGACCCCGTA
ACGACGACAGCACCGGGAGACCGAAATACGCAACCCACGACCACCGCAGG
AGCCACCATCGGTGGTGCCCCACGACCGGAGACGGTCCATGCAGCTCGCC
GGCACCGGCGGCGTGGTGATGGTGGTCCTATACCGGCTGCGAACACAGCA
GCAGTATATAACGGCCGGCCCGCTGGTGACGACGGCGCTGTCGCATTGGC
CAGACGCGCCGGCAACGGCGGTGGTGCTGCAAGGCCGCGTACTCTGTTGG
CGAGCGCCGGGGTGCCTCGACAACAGAGCGACAACGGCTGCGTGGCGTCG
GGGTTGGGATGGGGGGGTGGGGTGACGTCGCCGGGAGCGGCGGCTGTAGC
GGTATCTCCTAATAGGCGACTGGGGGTGGCACACCCTACCGCAGCCGCCC
TACCCGGGACCAGCGGCTTGCCGACACAATCTACCGCCGACACCTCGCAA
CAATCTGCTGAAGAGCAGCAACAACCCGCACCGGCACCGACGACTGTCGC
ATCATCAGCGGGACCAGCAGCAGCTGATGTCCCACAAGACATCTCCAGCT
CAACAGGCTCTGAACAAGATAGTTACCAGCAGCATCAGCAGCAGCGAGAG
AAAGGAAGAGCGAAGGAGAGCAGGTCGAGGACGGGGAGCGGGAGAGCGGG
GGCTAGCCGCGGCGGTCATGGCGGCGACGTCGGCGGCCGATCACGAAGCC
GGAGAGCCCGGGAATCGGCCCTACCAAGCGGGACTAGGATTCCGCCGGAC
GTGGTGCCAAGCCTGAGCGAGGCCGAGCTAGAGACCTCCGATGCTGGTCA
CGTTCTGCAGGGCATCGACAAGGTAGCAGCTGATCTCGTGGACTGCGATA
GGCTCGACGTTACTTTCGAGGACATCGCTGGCATGGAGGCCATGAAGCGA
TCTCTGCAGGAGATCATATCGGAGCCACTCGACCTCCCGACAGACTTGTA
CCCTGCACGTCTCATCAAGCCCTGTACCGGAATTCTCATTTACGGACCCC
CTGGCTGCGGGAAGACCCTCATCGCAAGAGCGGTCGCCAAGCAGAGCGGC
GCGGCCTTCCTGAGCGTCAAGGCCTCCACGCTCATGAGGACATCCGGCGG
CGGCGGCGGCGGCGGGAGCGACCGCCGGTCAAATGACAGTCCCGGCGGTG
GTGGCGGCGGGGTCGGGCACTCGAGTGTCATGGTCCGAGCCGTGTTCAGC
CTTGCCCGGAAGGTCCAGCCCTGCATCGTCTTCCTGGATGAGGCCGACGG
CCTGTGCTACAAGCGCGAAGAGGGAGACAGGGCGGTTAACAGAGGCGTGA
TGACGGAGCTGATGCAACTTTGGGACGAGCTCTCCTGTTCGGGGCAGGAC
AGGCAGGACAGGGTGGTGGTGCTCGCCGCCACGAATCGACCCTGGGACCT
CGACCCGGCGGCGCAGAGGCGTTTTTCTCGGTCGTTCCAGGTGGGCTTGC
CCGACCGCAAGATGCGGAAGGCGGTGCTGATGAAGGCTCTCGAGGACGTG
GAGGTGGAGGAGGGTTTCGACTGGCGGGAGTTGGCCGTCAAGACGGAGGG
GTACAGCTGCGGGGACGTCGTGGAGCTCTGCCGAGAGGCA
back to top