mRNA_Ecto-sp6_S_contig1.108.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig1.108.1
Unique NamemRNA_Ecto-sp6_S_contig1.108.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig1.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig1contigEcto-sp6_S_contig1:1306257..1308032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size663
Hectar predicted targeting categoryother localisation
Exons2
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348659.2193367-CDS-Ecto-sp6_S_contig1:1306256..13068531682348659.2193367-CDS-Ecto-sp6_S_contig1:1306256..1306853Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1306257..1306853 -
1682348659.2297204-CDS-Ecto-sp6_S_contig1:1307966..13080021682348659.2297204-CDS-Ecto-sp6_S_contig1:1307966..1308002Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1307967..1308002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348659.2423422-UTR-Ecto-sp6_S_contig1:1308002..13080321682348659.2423422-UTR-Ecto-sp6_S_contig1:1308002..1308032Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig1 1308003..1308032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig1.108.1prot_Ecto-sp6_S_contig1.108.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig1 1306257..1308002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig1.108.1

>prot_Ecto-sp6_S_contig1.108.1 ID=prot_Ecto-sp6_S_contig1.108.1|Name=mRNA_Ecto-sp6_S_contig1.108.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=211bp
MTTATAAARYQQTTKSREAYEAQQLAFLHRPFTASASRRSRPKSAGAGSW
NGSRDRPGGGGGGTKESSFPSPPSYPPPAYYPAPGTGGSGHGGGAPRGHP
PPAFGRRVSRGSGSSANGDPRGARPGKPRTRVRPSSANARVYGTPGAGQG
VGVGAGGGGGVGHNSSGTGGIPRGEYVPRYAAGYGVCAAGSESSKAATGG
SQGQASAFHF*
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mRNA from alignment at Ecto-sp6_S_contig1:1306257..1308032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig1.108.1 ID=mRNA_Ecto-sp6_S_contig1.108.1|Name=mRNA_Ecto-sp6_S_contig1.108.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1776bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1306257..1308032- (Ectocarpus species6 EcLAC_371)
GGATCATCGGGCCTTTGGATCCTGAAAAACATGACCACTGCAACGGCGGC
GGCGCGGTATCAACAGGTGTGGACGTGATTTTCGTCGGGGAGCTGTCTCT
CTTGCGATTGCATTTACTCTGTAGTCTAGCCTCCTTTGGCAGAGGAGGGG
ACCGTACGTAAGTATATGTACCAATTATGTCTGACAACTTTGCGAGGAGG
CTGGTACTGTAGATTCGTCAACTCCCACACCCCCGTGGGCGTGTGGGTAC
CCTGCCTGAGGGCTGCCTGAGAGTGACCCAAGAGAGTTCGGACGGGGTCT
CAGCCACGAGACTACTGCTGTTATTCCCTCGACGATCATTTCATGTACGT
CGCGCACCCAAATGTTACGTGTTCGTCCTATCCATGATTCCGGGCGCCAA
CGTAACACCTCTCGTCATACGCTTCAGCCATCAGCCGTATGCTACAGTGA
CATTCGTGCAGAGACGGATGAAATACATCTTGACTCGCTCGCCACCTTGT
TCCAGTCTCCGCCAGATCTTCAAATGATGAAGTATGATGACAAGCAGTTC
ACTGTGGTTTGATTTCCGGAGAGAGGAAGCACTGGTTTCCTTCTCCCCCT
GCCACCCCTCCCTTGGGATGCACACAGACCCCAAGTTGCCGGCTGTACGA
GGCGGCCTACTCGTGTTTTCACTTGACCGGCTATGGCACCGTCACTCAAC
TGTCATCGATGCCTCCATTTTTGTTCATTGAGAAAGCCAGTGTCCGGGGT
TCGATTCTCCCCTTGAGCATAACTTTCTTTGCGCCCGATGTATGAGGAGA
AAGAGTCTATGAGACTTCGCAAAGATCCTCTTGTACCGATGCAATTTCCG
GGCAAGACAGCGCTGATCACAGGGATGGCAACCCTGGGGGACGTGTTCGT
GGCTGCAAAGCTACATCGGACACGGGCATTGACTTTTGTTGGAATCGACC
GATGGTGACTGGTAGTCTAGTGGTCATCGTGCTTCTCAACAATCATCACA
TGCATACATATGCCGACCTAAGCTAGCGTTTCGTACTTGCGTGGAATCGA
CCGATGGTGGGCCTAAGTGTGCAGACACAAACAAGCAAATGTTGTGTCTT
TCTCGAGGTGCGCCCGCGCAGGAGTGATTCCATGTCGATTTGTGCAACAT
GCTCTCCTCGTACGACCGTCGACCAACAGACGACTAAGAGCAGAGAGGCG
TACGAAGCCCAGCAGCTTGCGTTTCTACACCGACCTTTTACTGCGAGTGC
CTCCCGCCGATCCCGGCCTAAATCGGCTGGCGCTGGGAGTTGGAACGGCA
GTCGAGATCGCCCCGGCGGTGGCGGTGGCGGGACGAAGGAGAGCAGCTTT
CCCAGCCCACCATCTTACCCGCCACCAGCGTATTACCCTGCTCCGGGCAC
CGGTGGTAGTGGCCATGGTGGCGGAGCACCGCGTGGTCACCCCCCGCCAG
CTTTTGGTCGCAGGGTGAGCAGAGGGAGCGGGTCGTCAGCAAACGGTGAT
CCTAGAGGTGCGAGGCCGGGGAAACCTCGCACAAGGGTGCGTCCCAGCAG
TGCCAACGCACGAGTCTACGGGACACCTGGAGCAGGCCAAGGAGTGGGTG
TCGGGGCCGGAGGGGGGGGGGGCGTTGGGCACAACAGCTCGGGCACCGGC
GGGATCCCGAGAGGGGAGTACGTGCCCCGCTACGCAGCCGGCTATGGTGT
GTGCGCGGCAGGTAGCGAGAGCAGCAAGGCTGCGACAGGGGGGAGCCAAG
GGCAGGCGAGTGCTTTTCACTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig1:1306257..1308032-

>mRNA_Ecto-sp6_S_contig1.108.1 ID=mRNA_Ecto-sp6_S_contig1.108.1|Name=mRNA_Ecto-sp6_S_contig1.108.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1306257..1308032- (Ectocarpus species6 EcLAC_371)
ATGACCACTGCAACGGCGGCGGCGCGGTATCAACAGACGACTAAGAGCAG
AGAGGCGTACGAAGCCCAGCAGCTTGCGTTTCTACACCGACCTTTTACTG
CGAGTGCCTCCCGCCGATCCCGGCCTAAATCGGCTGGCGCTGGGAGTTGG
AACGGCAGTCGAGATCGCCCCGGCGGTGGCGGTGGCGGGACGAAGGAGAG
CAGCTTTCCCAGCCCACCATCTTACCCGCCACCAGCGTATTACCCTGCTC
CGGGCACCGGTGGTAGTGGCCATGGTGGCGGAGCACCGCGTGGTCACCCC
CCGCCAGCTTTTGGTCGCAGGGTGAGCAGAGGGAGCGGGTCGTCAGCAAA
CGGTGATCCTAGAGGTGCGAGGCCGGGGAAACCTCGCACAAGGGTGCGTC
CCAGCAGTGCCAACGCACGAGTCTACGGGACACCTGGAGCAGGCCAAGGA
GTGGGTGTCGGGGCCGGAGGGGGGGGGGGCGTTGGGCACAACAGCTCGGG
CACCGGCGGGATCCCGAGAGGGGAGTACGTGCCCCGCTACGCAGCCGGCT
ATGGTGTGTGCGCGGCAGGTAGCGAGAGCAGCAAGGCTGCGACAGGGGGG
AGCCAAGGGCAGGCGAGTGCTTTTCACTTTTGA
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