mRNA_Ecto-sp6_S_contig1.101.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig1.101.1
Unique NamemRNA_Ecto-sp6_S_contig1.101.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig1.101.1 vs. uniprot
Match: D7FLI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI1_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.400e-66
Identity = 107/112 (95.54%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:    1 MRTVQVAAAFLAIYRVSGFVIPTSLQSRPAASSATSSQPATHVEHVRRQQPFDARHAPVLMASQGGRGEEE-VDDVEEKGGIEPKYLAAIGVVLFAALYDLFVTHEGRLWEL 333
            MRTVQVAAAFLAIYRVSGFVIP SLQSRPAAS  TSSQPATHVEHVRRQQPFDARHAPVLMASQGGRGEEE VDDVEEKGGIEPKYLAAIGVVLFAALYDLFVTH GRLWEL
Sbjct:    1 MRTVQVAAAFLAIYRVSGFVIPASLQSRPAASIPTSSQPATHVEHVRRQQPFDARHAPVLMASQGGRGEEEEVDDVEEKGGIEPKYLAAIGVVLFAALYDLFVTHGGRLWEL 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig1.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLI1_ECTSI2.400e-6695.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig1contigEcto-sp6_S_contig1:1210186..1212362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size336
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_001100.1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348657.9827223-CDS-Ecto-sp6_S_contig1:1210185..12104361682348657.9827223-CDS-Ecto-sp6_S_contig1:1210185..1210436Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1210186..1210436 +
1682348657.9921188-CDS-Ecto-sp6_S_contig1:1212277..12123621682348657.9921188-CDS-Ecto-sp6_S_contig1:1212277..1212362Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 1212278..1212362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig1.101.1prot_Ecto-sp6_S_contig1.101.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig1 1210186..1212362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig1.101.1

>prot_Ecto-sp6_S_contig1.101.1 ID=prot_Ecto-sp6_S_contig1.101.1|Name=mRNA_Ecto-sp6_S_contig1.101.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=112bp
MRTVQVAAAFLAIYRVSGFVIPTSLQSRPAASSATSSQPATHVEHVRRQQ
PFDARHAPVLMASQGGRGEEEVDDVEEKGGIEPKYLAAIGVVLFAALYDL
FVTHEGRLWEL*
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mRNA from alignment at Ecto-sp6_S_contig1:1210186..1212362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig1.101.1 ID=mRNA_Ecto-sp6_S_contig1.101.1|Name=mRNA_Ecto-sp6_S_contig1.101.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2177bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1210186..1212362+ (Ectocarpus species6 EcLAC_371)
ATGCGCACGGTCCAAGTTGCTGCGGCCTTCCTAGCGATCTACAGGGTTTC
GGGCTTCGTAATTCCGACATCACTTCAATCAAGACCCGCTGCTAGCAGTG
CAACATCATCACAGCCTGCGACGCATGTTGAACATGTACGCAGGCAGCAA
CCGTTCGACGCTCGCCACGCGCCAGTTTTGATGGCGTCCCAGGGTGGCAG
AGGAGAGGAGGAGGTGGACGATGTCGAGGAGAAGGGCGGGATAGAGCCCA
AGTGAGTGGGGCGTTGGGGCTCTAAGTTAGAGGGCGGTCAGCTTTTGTCA
AACCAAGTGTGTCGAGTCACGTACGGACTCTGTACCAGTTGCTGCGATGA
ACTCGGCCAGTGTGTGTCAAGTGTGTCAGTATGCATCATAAGCATTCAGA
CAGCAGTAGCGCCGAATTTTGGTGGCATTTCGCTCCCATGATGTCGATTT
GAACGTGCCGGAGACGGATGTGCTACAAACAGGAGGCAGTTGCCCTGACT
GAGTGCGACGGATGCGCTGGCGTGATGACTCATGGTGCCCTCAAAAAGAG
TATTTACACACAAATCGAACTGAACGCGCGTATTGCGATCTTCCCCCAAC
CCTCGCTCCGTGTTTGATCCATGAGATCCATGAGGAAACCAACAGGTAAT
CAATAGAAGTAGGTTTCATATGGCTAGGATTCAGGTTGTTACGTTTCGTG
AAAATCGACACCTGAACCTCTTATTTGGCGCGCAGTTGTATGCATCACTC
TTTTATCAATTAAGCTGCTCCCTCGGCCTCGCACAGACCTCCGTTTCTTT
TTGCATATTTATTTTCCGCTCTCCGCGTCTTTTCACTCCTCTGCATAATT
CTCACCCACTCGCGAAAACGCGGGCCTGGCGGCTATCGCGGCCCCGCTCA
GTAGATCGATTCCAAGATACGCGATAAGTGGCGGTAGCAGTTTAGTGAAA
GGAAGTAAGAAACGTCTTGATGCAGAAAGAAAGAGAGAGGTCGTACTCTG
GCGGCTTTCGCCGCCCCGCTCAGTAGATTGATTCCAAGATACGCGAAAAG
GTACATAGCAATTCTAGTGCGGCCCGGACACGGAATACACATGTGAAAAT
AGCCCGAGCAAGCTGTGTGCCGTGCGGCTCAACGAAGATGCATACACACA
TACCCGAAAACAGGAAGAGGTAGAGGGGTGGAAGAAGTGGTACATAGAGC
AGCGGATCGTTGGGCGTGTTTTGTATGAGAGGAACTCGCAGGCCTCACCG
CCAGAAGTGTGCCCGGCCTCAAGCCATCGCTCATCGGGTAACAGCTGTGA
GTAGGTCCGTGCGGCGTTCGGTGCGGAGTTTAATGCACATGCGGAGTGCT
GCGTTCAAGAGCGGTGTTGAAAAGCGTGCCCGGCCACAACTGGTACATAC
ATGAAATATGGACGTATGGACTCGTGTGTCTACGTACTTGAGCACCACAA
CCGAGATGAGCGGCCCCGGCTAAAGAAACGGGGGCTGAGCAACAAACCGG
CTAGATCGTTTGAGCTACTGCCGTATGTGCTGCTGGCGTCTGCTGGTCGT
TTGGTCCGGTTTCGCTAAGCGGGACGGGGAAGGGTGCGGAGAGTCAGAAA
AGAAGTGCCGCTTCAAGCATAATACCAGACggagagaGCCTGGGGTGAAC
TGTGAAAGCCTAGAAGAGAGACGTGGGTAAAATGTGAAAGGATGGGCAGG
AGACAGAGCAGAGGAGAGGGCGGCGATAAGCCGCCAGGTCCCTTGTAGAT
TGTATGCATGTACCGTTCAAGCACCAATTTCATGAAGTTGACTGTTCGTC
TCGTACTGAGCCGTTAGTGCTCTGCAGAGCCAGTCAATCTGTAAACAGTA
GGATATGTAGGACGGGTCGACTATTGTCCTGCCAATAAAATCCCTGACGC
ACTGACTGTACCGAAGGCGCTACGGCAGTGCGATTGGACATCGAGAATCA
GGCCATGTACGACGTGGCTTGGTGGCTGCGGTGCTCTGTCGCAGTATGCC
GGGTTCCTGCTTGTTTGCGAATCGCGCCCCGTTGCTGTATGAAAGAGTCG
GCTGGTCAACAAAGCTCGCTCTCTCGTCACTTTCGTGTCCAGGTACCTCG
CTGCGATCGGAGTGGTCTTGTTCGCGGCGCTGTACGACTTGTTCGTCACC
CACGAGGGTCGGCTGTGGGAGCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig1:1210186..1212362+

>mRNA_Ecto-sp6_S_contig1.101.1 ID=mRNA_Ecto-sp6_S_contig1.101.1|Name=mRNA_Ecto-sp6_S_contig1.101.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:1210186..1212362+ (Ectocarpus species6 EcLAC_371)
ATGCGCACGGTCCAAGTTGCTGCGGCCTTCCTAGCGATCTACAGGGTTTC
GGGCTTCGTAATTCCGACATCACTTCAATCAAGACCCGCTGCTAGCAGTG
CAACATCATCACAGCCTGCGACGCATGTTGAACATGTACGCAGGCAGCAA
CCGTTCGACGCTCGCCACGCGCCAGTTTTGATGGCGTCCCAGGGTGGCAG
AGGAGAGGAGGAGGTGGACGATGTCGAGGAGAAGGGCGGGATAGAGCCCA
AGTACCTCGCTGCGATCGGAGTGGTCTTGTTCGCGGCGCTGTACGACTTG
TTCGTCACCCACGAGGGTCGGCTGTGGGAGCTCTAG
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