mRNA_Ecto-sp13_S_contig1700.4991.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1700.4991.1
Unique NamemRNA_Ecto-sp13_S_contig1700.4991.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 9.370e-20
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 43
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: A0A6V1MPB5_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 2.550e-19
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 43
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: A0A662WWK7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWK7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.170e-19
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            MS GR CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGG
Sbjct:    1 MSQGRTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGG 43
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: W2R6W9_PHYPN (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=W2R6W9_PHYPN)

HSP 1 Score: 85.1 bits (209), Expect = 6.740e-19
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            MS G+ CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    1 MSQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 43
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: A0A482UWF8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWF8_9ARCH)

HSP 1 Score: 84.7 bits (208), Expect = 6.820e-19
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            M++ RVCHFKLVLLGD+AVGKSCLVVRFVRDEFFE+QEPTIGG
Sbjct:    1 MAAQRVCHFKLVLLGDSAVGKSCLVVRFVRDEFFEFQEPTIGG 43
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: F0YJN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.020e-18
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 43
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: A0A4D9D9M2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9M2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.300e-18
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:  361 GDMSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            G  S+ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:    6 GSNSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 50
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: A0A7S1XXR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXR9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.190e-18
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  358 AGDMSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            A  M+S RVCHFKLVLLGDTAVGKSC+VVRFVRDEF+E+QEPTIG 
Sbjct:   20 APTMASNRVCHFKLVLLGDTAVGKSCIVVRFVRDEFYEFQEPTIGA 65
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: K8YWB7_NANGC (Ras-related protein Rab-5C (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YWB7_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 7.160e-18
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:  361 GDMSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            G  S+ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:   65 GSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 109
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BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Match: A0A7S3ZNA4_9STRA (Hypothetical protein n=6 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNA4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.240e-17
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  367 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 495
            MS+ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    8 MSAARVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1700.4991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC7_ECTSI9.370e-2097.67Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1MPB5_HETAK2.550e-1995.35Hypothetical protein n=2 Tax=Chattonellaceae TaxID... [more]
A0A662WWK7_9STRA4.170e-1993.02Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
W2R6W9_PHYPN6.740e-1988.37Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A482UWF8_9ARCH6.820e-1988.37Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0YJN1_AURAN1.020e-1893.02Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A4D9D9M2_9STRA3.300e-1888.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1XXR9_9STRA4.190e-1882.61Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K8YWB7_NANGC7.160e-1888.89Ras-related protein Rab-5C (Fragment) n=2 Tax=Nann... [more]
A0A7S3ZNA4_9STRA1.240e-1790.70Hypothetical protein n=6 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1700contigEcto-sp13_S_contig1700:4420..5738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size497
Hectar predicted targeting categoryother localisation
Exons2
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.0992641-CDS-Ecto-sp13_S_contig1700:4419..48361681462891.0992641-CDS-Ecto-sp13_S_contig1700:4419..4836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1700 4420..4836 -
1681462891.1113174-CDS-Ecto-sp13_S_contig1700:5658..57331681462891.1113174-CDS-Ecto-sp13_S_contig1700:5658..5733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1700 5659..5733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.1206925-UTR-Ecto-sp13_S_contig1700:5733..57381681462891.1206925-UTR-Ecto-sp13_S_contig1700:5733..5738Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1700 5734..5738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1700.4991.1prot_Ecto-sp13_S_contig1700.4991.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1700 4420..5733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1700.4991.1

>prot_Ecto-sp13_S_contig1700.4991.1 ID=prot_Ecto-sp13_S_contig1700.4991.1|Name=mRNA_Ecto-sp13_S_contig1700.4991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MPWLEEPRGRGCCLLSSPISCPALKRASREKTLTSKERQATAYSVCTAGN
YEGRSQHPGGVLLVGPSYRAGIPYTFLQLPSVKDGYYLPNTAVPQGGIIS
SVPTGTRERLPPPSVARSRRYEFGEGVPLQARVARGHGGGEVMSRCAFCE
GRVLRVSRTHDRR*
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mRNA from alignment at Ecto-sp13_S_contig1700:4420..5738-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1700.4991.1 ID=mRNA_Ecto-sp13_S_contig1700.4991.1|Name=mRNA_Ecto-sp13_S_contig1700.4991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1700:4420..5738- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCATGCCGTGGTTGGAGGAACCAAGGGGACGCGGTTGTTGTTTGCTC
TCTTCGCCGATCAGCTGTCCTGCATTGAAAGTGAGTGTGGCACAACAGAT
GGGGATGTGTTCTAATCAGGTAGAAGTCGTGCGTCTGTAACTTTGTACAG
GCCGTATTGGATCGTACCGTTGGAAACCACAAAGAGTCGGCGACACCAGC
AGCGCACCAGAGGAGAGAGCAGGAACGAGTGCGGTGGCCGCCTCCCGTTT
ACTCTAGAGAGAGCTTCCCAGGTTCTCATACCCCCTCGTAGGTCACACCG
ATGAGCTTCGTCGTGCCTCTGCCTGTAGCTGCCTTATTTGCAAGAGAGGT
TCAATGCGCCCAGCCGCTGAGTTTCCCCGTCATCAAGTACTGAACGATTC
AGCAGAGGCAGTCGTGCACGTTTCGATTGGTGCCGTTCCCACCGGGTGAC
AGCGATGCTCAAACGCGCCCGTGACACCCCGGGAGCACAGGCTTGCTCGG
CTCCATACAGGTGGTCTTGTGAAGACGTCAAAGCGATCCGCGTTCTGTCG
AACTCTATCCCCTCTGCTTTTCTAAATCCCTCCGCTGGGGAGAAAAAGCC
TATGTTCTAAAAAAAAGCCCCATGTTGATTGTTTCGAAAGTCAACCTCAA
GCCCGCTTTTCTGTCCCGTCAACGACCGTGCCACGTAACTGCTGCCGCGC
AAGGCGAAGGACGCCGTTTGACGTTTGGCTAGGACAAGCAGAGCAGCAGC
AGTAGCTCTGCCCTGGCTCTGACAGCCTGATTTATTTTTATCAAGACTGT
ATGGTGTGCCCTGTTTTTGCAACTGGTACGACGACAGAGTGTTGGCCGCG
CGCGTGTGTGTGTCTTGACGTCTCGACCCGGAACATTGCCCTTCCCCTGC
AGCGCGCATCACGAGAGAAAACGCTAACAAGCAAGGAACGGCAGGCGACC
GCTTATTCGGTCTGCACAGCCGGAAACTACGAAGGAAGGAGCCAACACCC
AGGCGGCGTACTGCTTGTTGGCCCTTCATACCGCGCAGGAATCCCTTACA
CGTTCTTGCAGCTACCATCGGTGAAGGACGGTTACTACCTTCCAAACACA
GCAGTGCCGCAGGGCGGAATAATTAGTTCCGTGCCAACAGGAACAAGAGA
AAGGCTGCCGCCGCCATCCGTAGCCAGAAGCAGGCGATATGAGTTCGGGG
AGGGTGTGCCACTTCAAGCTCGTGTTGCTCGGGGACACGGCGGTGGGGAA
GTCATGTCTCGTTGTGCGTTTTGTGAGGGACGAGTTCTTCGAGTATCAAG
AACCCACGATCGGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1700:4420..5738-

>mRNA_Ecto-sp13_S_contig1700.4991.1 ID=mRNA_Ecto-sp13_S_contig1700.4991.1|Name=mRNA_Ecto-sp13_S_contig1700.4991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1700:4420..5738- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGGTTGGAGGAACCAAGGGGACGCGGTTGTTGTTTGCTCTCTTC
GCCGATCAGCTGTCCTGCATTGAAACGCGCATCACGAGAGAAAACGCTAA
CAAGCAAGGAACGGCAGGCGACCGCTTATTCGGTCTGCACAGCCGGAAAC
TACGAAGGAAGGAGCCAACACCCAGGCGGCGTACTGCTTGTTGGCCCTTC
ATACCGCGCAGGAATCCCTTACACGTTCTTGCAGCTACCATCGGTGAAGG
ACGGTTACTACCTTCCAAACACAGCAGTGCCGCAGGGCGGAATAATTAGT
TCCGTGCCAACAGGAACAAGAGAAAGGCTGCCGCCGCCATCCGTAGCCAG
AAGCAGGCGATATGAGTTCGGGGAGGGTGTGCCACTTCAAGCTCGTGTTG
CTCGGGGACACGGCGGTGGGGAAGTCATGTCTCGTTGTGCGTTTTGTGAG
GGACGAGTTCTTCGAGTATCAAGAACCCACGATCGGAGGTAA
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