mRNA_Ecto-sp13_S_contig170.4990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig170.4990.1
Unique NamemRNA_Ecto-sp13_S_contig170.4990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig170.4990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig170contigEcto-sp13_S_contig170:33168..34484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size190
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.0384762-UTR-Ecto-sp13_S_contig170:33167..331761681462891.0384762-UTR-Ecto-sp13_S_contig170:33167..33176Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig170 33168..33176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.050167-CDS-Ecto-sp13_S_contig170:33176..332521681462891.050167-CDS-Ecto-sp13_S_contig170:33176..33252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig170 33177..33252 +
1681462891.0598803-CDS-Ecto-sp13_S_contig170:34380..344841681462891.0598803-CDS-Ecto-sp13_S_contig170:34380..34484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig170 34381..34484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig170.4990.1prot_Ecto-sp13_S_contig170.4990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig170 33177..34484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig170.4990.1

>prot_Ecto-sp13_S_contig170.4990.1 ID=prot_Ecto-sp13_S_contig170.4990.1|Name=mRNA_Ecto-sp13_S_contig170.4990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MGRPRFILVVEGFLADVFDTPGNQATVRPIGNPRGQFSSSIIFGHDGVCE
RYPRKHSCRR
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mRNA from alignment at Ecto-sp13_S_contig170:33168..34484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig170.4990.1 ID=mRNA_Ecto-sp13_S_contig170.4990.1|Name=mRNA_Ecto-sp13_S_contig170.4990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig170:33168..34484+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATTCGGTAATGGGGAGGCCGCGGTTCATCCTGGTCGTCGAAGGTTTTCT
TGCGGACGTATTTGATACCCCAGGAAATCAGGCGAGTCTTGAAGCATGGA
CACAGGCAGCGGCGAAGCGACTCCTACACGATGTTCCTGCGGGCGAACGG
CATTACCCCGAGGACGTATGGCAGTAGCATGTCCTGGTGGTGGTGTTGGC
TGAGAATCGATGCCATCCAGAAGTCTTTGAAGGGGCGAAGCCATCTCGAA
CGCATCAGGAGTCAAGAGCCCAAAGGATCGTTGTAGTTATGTTGCTCGTA
TGTATGTGGTTGGAGTGACTGCATTATTCAAGTCGTACCTGATACATAAT
TTTTGGTGCTTTGGCGTATCTTTCTCTGGTGACAGTGAACCTTTGTGACG
CTCCCTTCCGAGGGGCGCGCAGGAAGTCCAGCACGCCCGGAGCTCACTAG
GCACCCGTGACACGTGTGCTCGACGCCTACAGTCGCGGCGACAGACTGTA
TTTTCCGGCGAACGTGTTGCGCGAACCACCGTTGAAACCCATGAAAGTTG
TCTCGTTTGCAAGAACGGTCGTCTATGACGCCAACTCCAAGTGCCGATGA
AGCTGATCACGTGCCCGCACAAGCCTCGTGTTGCTACTTCGGATTGCGTC
CTTGCTGGTCTGGTGTGTCGGGTTAAAAGAAAGCCAGTCCCAAGTTTTGC
AACTTACCCAGAAAATGCCCAATTCTTACATGTATGTTCACTCGCTCAAC
AGTGCATGAGGTGTTGTTGTTGTTGATGAGAGCAGGAACAAGACCATGCC
AAGCCCGTAAGATTCAACATGGCATCTTCCGTCACCGTCAAGATGGCCGT
ATCCAACATCGCGAAGAGAGACCTTGTGGGGAAAGGGAATATTGGGTGTG
AAATGTAAAACCCAAACTACTGACCTCACAGCGACACCTTTCGTCTCTCC
GCTTTTGTTTTTGTTCCCCCTCGTCGTAGTTTCGTTCCTAGAAAACTTGT
CGTGGGATCATCTGCGCCACCACCAGCTGGCATCACTGATAAATCATCAG
TGTATAGACTCGTAAAGACTCGAAATAAGTCCAGTACCCAGCCGGTTTTC
CTCCACTTGCTGAAAAGACTCCACCACATCCCGTTCGACTGTGGGTATAT
CTCGAATGGGCAGTCTTTCTGTGCGTGTATTTATTTCTCCTTAATCATCT
GAGTACCCTTCAGCTGTACGGCCCATCGGCAATCCCCGCGGGCAGTTCTC
CTCTTCAATTATTTTTGGACACGATGGAGTTTGTGAAAGATATCCTAGAA
AACATTCCTGCCGCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig170:33168..34484+

>mRNA_Ecto-sp13_S_contig170.4990.1 ID=mRNA_Ecto-sp13_S_contig170.4990.1|Name=mRNA_Ecto-sp13_S_contig170.4990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig170:33168..34484+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGGCCGCGGTTCATCCTGGTCGTCGAAGGTTTTCTTGCGGACGT
ATTTGATACCCCAGGAAATCAGGCGACTGTACGGCCCATCGGCAATCCCC
GCGGGCAGTTCTCCTCTTCAATTATTTTTGGACACGATGGAGTTTGTGAA
AGATATCCTAGAAAACATTCCTGCCGCCGC
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