mRNA_Ecto-sp13_S_contig10029.50.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10029.50.1
Unique NamemRNA_Ecto-sp13_S_contig10029.50.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5KZG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG4_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 2.470e-97
Identity = 154/169 (91.12%), Postives = 160/169 (94.67%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            MKVDIKDLI LEAELKKSCDS  PPVVRDAKVNLLKYLQIQTVLQFEAAYD LYYEL KEGGLECLR+IAPFRSKDFSQPKVLELHGCGDEDVRLA QLEFYLA AELAK+RLDEIITN+ADDWGRYEVQ+V+VKSRESTQRKVRRFYGGDVRKV DMARV+VI LTPE
Sbjct:    1 MKVDIKDLIGLEAELKKSCDSATPPVVRDAKVNLLKYLQIQTVLQFEAAYDNLYYELGKEGGLECLRDIAPFRSKDFSQPKVLELHGCGDEDVRLANQLEFYLAGAELAKRRLDEIITNLADDWGRYEVQHVEVKSRESTQRKVRRFYGGDVRKVADMARVSVICLTPE 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 1.680e-96
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            MKVDIKDLI LEAELKKSCDSV PPVVR AKVNLLKYLQIQTVL FEAAYDTLYYELDKEGGLECLR+IAPFRSKDFSQPK LEL+GC DEDVRLAKQLEFYLADAELAKQRLDEIITN+ADDWGRYEVQYV+VKS ESTQRKVRR Y GDVRKVTDMARVTVI LTPE
Sbjct:    1 MKVDIKDLIRLEAELKKSCDSVTPPVVRGAKVNLLKYLQIQTVLLFEAAYDTLYYELDKEGGLECLRDIAPFRSKDFSQPKALELYGCVDEDVRLAKQLEFYLADAELAKQRLDEIITNLADDWGRYEVQYVEVKSWESTQRKVRRLYDGDVRKVTDMARVTVICLTPE 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 6.040e-64
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            M VDI +L+ LEAEL+ SC+    P  RDAK+NLLK+LQI+ VLQ+E AYD LYYEL+K GGLECLREIAP R KD  QPKVLEL  C +EDVR A QLEFYLADAELAK RLDE++ ++A   G  EV   +VKSR STQRK  + YGGDVRKV DMARV+VI   PE
Sbjct:    1 MSVDIAELLRLEAELENSCEDCRNPYDRDAKLNLLKFLQIRAVLQYEEAYDRLYYELNKHGGLECLREIAPARLKDLLQPKVLELQDC-NEDVRFAAQLEFYLADAELAKNRLDELVADIAKHTGECEVHCAEVKSRASTQRKASKSYGGDVRKVADMARVSVICDNPE 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7FH93_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.220e-59
Identity = 110/169 (65.09%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            M VDI +LI LEAELK SC+S   PV  DAKVN+LKYLQ+QTVL+F+  YD LYYEL+K GGLECLR IA  RS +  QPKVL L  C  ED +L KQL+FYLADAELAK  LDE++T VA D  +YEVQ  +VKSREST+RK  R + GDVRKV DMARVT+I   PE
Sbjct:    1 MDVDINELIRLEAELKTSCESETSPVSLDAKVNILKYLQVQTVLRFQGQYDGLYYELNKTGGLECLRGIAAVRSTELLQPKVLGLQDCS-EDEQLEKQLQFYLADAELAKPNLDELVTKVAHDSSKYEVQRAEVKSRESTRRKASREHDGDVRKVADMARVTLICANPE 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 2.310e-58
Identity = 109/169 (64.50%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            M VDI +L+ LEAEL+ SC+    P  RDAK+NLLK+LQI+ VLQFE AYD LYYEL+K GGLECLREIAP R KD  QPKVLEL  C +E VR A QLEFYLADAELAK RLDE++ ++A+  G  EV   +VKSR  TQRK R+ YGGDVRKV DMAR++VI   P+
Sbjct:    1 MSVDIAELLRLEAELENSCEDCQNPYDRDAKLNLLKFLQIRAVLQFEEAYDQLYYELNKHGGLECLREIAPARPKDLLQPKVLELQDC-NEGVRFAAQLEFYLADAELAKNRLDELVADIAEHTGECEVHCAEVKSRAITQRKARKSYGGDVRKVADMARISVICDNPQ 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 3.380e-58
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            M +DI +L  LEAEL+ SC++   P  RDAK+NLLK+LQI+ VLQFE AYD LYYEL+K GGL+CLREI P R KD  QPKVLEL  C  EDVR A QLEFYLADA+LAK RLDE++ ++A D G  +V   +VKSR STQRK R+ Y GDVRKVTDMARV+VI  TPE
Sbjct: 1428 MSIDIAELRRLEAELENSCETCQNPYDRDAKLNLLKFLQIKAVLQFERAYDHLYYELNKHGGLKCLREITPARPKDLLQPKVLELQDC-HEDVRFAAQLEFYLADAKLAKNRLDELVVDIAKDTGGCQVHCAEVKSRASTQRKARKSYDGDVRKVTDMARVSVICDTPE 1595
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.270e-58
Identity = 106/169 (62.72%), Postives = 123/169 (72.78%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            M VDI++L+ LE ELK SC+    P   DAK+N+LK LQ+QTV+QF+ AYD LYYEL+KEGGLECLR IAP RS    QPKVL+   C DE  +L  QL+FYLADAELAK  LDE+IT VA D  +Y+VQ  DVKS EST+RK     GGDVRKV DMARV VI  TPE
Sbjct:    1 MNVDIEELLRLENELKASCERETSPATPDAKMNILKCLQVQTVVQFQLAYDDLYYELNKEGGLECLRSIAPARSTGIVQPKVLDPQNC-DEGGQLENQLQFYLADAELAKPHLDELITKVAHDSSKYKVQCADVKSWESTRRKASNSCGGDVRKVADMARVAVICATPE 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7G1L3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 9.790e-58
Identity = 110/167 (65.87%), Postives = 124/167 (74.25%), Query Frame = 2 
Query:   71 VDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            VDI DL+ LEAELK S +        DAKVNLLKYLQ+QTVLQF+AAYD LYYEL K GGL+CLR IAP  S    QPKV +   CG ED +L  QL+FYLADAELAK  LDE++ NVA D  +YEVQ+VDVKSREST+RK  RF  GDVRKV D+ARVTVI  TPE
Sbjct:    4 VDINDLLRLEAELKTSRERETSSTSLDAKVNLLKYLQVQTVLQFQAAYDDLYYELSKTGGLDCLRTIAPVPSTGVFQPKVFDPQDCG-EDEQLENQLQFYLADAELAKAHLDELVMNVAHDMSKYEVQFVDVKSRESTRRKASRFCDGDVRKVADIARVTVICTTPE 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.800e-57
Identity = 111/167 (66.47%), Postives = 126/167 (75.45%), Query Frame = 2 
Query:   71 VDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            VDI +L+ LEAELK S       V  DAKVNLLKYLQIQTVLQF+AAYD +YYEL + GGL+CLR IAP RS    QPKVL+L  CG +D +L KQLEFYLADAELAK  LDE++ NVA D  +YEVQ V++KSREST+RK    Y GDVRKV DMARVTVI  TPE
Sbjct:    4 VDISELLRLEAELKSSRARETWTVSLDAKVNLLKYLQIQTVLQFQAAYDDMYYELHQTGGLDCLRSIAPVRSTGVFQPKVLDLQDCGQDD-QLEKQLEFYLADAELAKACLDELVMNVAHDSSKYEVQCVEIKSRESTRRKASTGYDGDVRKVADMARVTVICATPE 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Match: D7FGT0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.200e-56
Identity = 106/169 (62.72%), Postives = 126/169 (74.56%), Query Frame = 2 
Query:   65 MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAYDTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLEFYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGGDVRKVTDMARVTVI*LTPE 571
            M +DI +L  LEAEL+ SC+    P  RDAK+NLLK+LQI+ VLQFE AYD LYYEL+K+GGL+CLREI P R KD  QPKVLEL  C  EDVR A QL+FYLADA+LAK  LDE++ ++    G  +VQ  +VKSR STQRK R+ YG DVRKV DMARV+VI  TPE
Sbjct:    1 MSIDIAELRRLEAELENSCEECQNPYDRDAKLNLLKFLQIKAVLQFERAYDQLYYELNKDGGLKCLREITPARPKDLLQPKVLELQDC-HEDVRFAAQLDFYLADAKLAKNHLDELVADITKGTGGCQVQCAEVKSRASTQRKARKSYGADVRKVADMARVSVICDTPE 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10029.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZG4_9PHAE2.470e-9791.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL3_ECTSI1.680e-9691.72TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHK0_9PHAE6.040e-6465.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH93_ECTSI1.220e-5965.09Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
D7FXH0_ECTSI2.310e-5864.50Tetratricopeptide repeat containing protein n=1 Ta... [more]
A0A6H5KHN5_9PHAE3.380e-5865.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KSC7_9PHAE8.270e-5862.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L3_ECTSI9.790e-5865.87Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5J9V8_9PHAE4.800e-5766.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGT0_ECTSI3.200e-5662.72TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10029contigEcto-sp13_S_contig10029:2106..4723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score298.1
Seed ortholog evalue2.5e-78
Seed eggNOG ortholog2880.D8LQL3
Model size573
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size495
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462501.6850736-UTR-Ecto-sp13_S_contig10029:2105..21651681462501.6850736-UTR-Ecto-sp13_S_contig10029:2105..2165Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10029 2106..2165 +
1681462501.742311-UTR-Ecto-sp13_S_contig10029:4210..42141681462501.742311-UTR-Ecto-sp13_S_contig10029:4210..4214Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10029 4211..4214 +
1681462501.7681952-UTR-Ecto-sp13_S_contig10029:4709..47231681462501.7681952-UTR-Ecto-sp13_S_contig10029:4709..4723Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10029 4710..4723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462501.7581258-CDS-Ecto-sp13_S_contig10029:4214..47091681462501.7581258-CDS-Ecto-sp13_S_contig10029:4214..4709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10029 4215..4709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10029.50.1prot_Ecto-sp13_S_contig10029.50.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10029 4215..4709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10029.50.1

>prot_Ecto-sp13_S_contig10029.50.1 ID=prot_Ecto-sp13_S_contig10029.50.1|Name=mRNA_Ecto-sp13_S_contig10029.50.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MKVDIKDLILLEAELKKSCDSVAPPVVRDAKVNLLKYLQIQTVLQFEAAY
DTLYYELDKEGGLECLREIAPFRSKDFSQPKVLELHGCGDEDVRLAKQLE
FYLADAELAKQRLDEIITNVADDWGRYEVQYVDVKSRESTQRKVRRFYGG
DVRKVTDMARVTVI*
back to top

mRNA from alignment at Ecto-sp13_S_contig10029:2106..4723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10029.50.1 ID=mRNA_Ecto-sp13_S_contig10029.50.1|Name=mRNA_Ecto-sp13_S_contig10029.50.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10029:2106..4723+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAACTTTTTTCTAACCCCACCGCGCATCTGCCGTGCCCGTAAATCGAGC
GTCAGATTGGGTGAGAGTCGGGGAGGCCCCCCTACCGTAGAACTACTTGT
GTCGCTTTTTTATGCACTCTTTCCGAAACCTTTCCCTATTACTCCTTCCT
TGCAGCTGTCGGCAGGACTCGGGCGCAGCCTGGTGAAGCGGTTCATCATG
GTTTTGAGTTTTGGTATTGAATGCACCTCTCCCTTTCAAGTTTCGCGCGT
GGCACAACAAGATAGTATGCCGCCGAAGTCATGATTGCTTTCATTGGGCG
GACCGTTTGGTTGCATACTTTTTGCGACCTGCAACAAGAGCAACAGTGCA
ACAACAGCAGTGCGGCTTTATGACGTCGGGGCAGGTCAGTCAGTCAGGTG
GTCTCCTCGTTCCACGACGGACTTCAAGTACCGTCGCGACGCAGTCTCTG
CCTCATTCCACGCCAAGACTGTAAGTATCAATCGCACGTCTATGCGTGGT
CCCTACGACAATTTCTAGCAGTGACCTTTCGGTGACGTTTGTTGCAGAAC
GGGCCGGCAAAAAAATGAACATATTCCCAGTCGATGTTGATTGTCTGGAC
CTATGTACTGTATGCATAGTCTACAGTTGGCGCCCGCAGTTAACGCTTAT
TTCAGGTCCAGCCTCGAATTCTTAATTGAGGGCTATAAACTCAGCGTATG
TCGTTCAGTTTCTTACATCAAGTTTCTTTCTTTTTTGTGCAGCCAAGTCC
TGCTGAATTTCTTAAAACGGCAATTTCTTATTTCTCTGCTTGCATAGCAC
ACAACGCTCCAAATATACAAATGATTTGCGCTGCTTTCCTCGACTCCCTA
CTCAACCCCGATTCTCACTACCGACGGCTGCACGTAAGGCTACTCCCTAG
AATAATGTATCCAGCGGCAACGTCTCGCTATCGGTACAAGGTCCTGTACC
CCCCTCATGAGCGAGGGCTGAAACTAAACTAATGGCTCGTCGATAGCTCT
TGTTGATCTCTGAGGGCGACCAGCTTGGTCAAGCCCTCACGAGAGCTGGC
GGAGAGCACCATCAAAGCCGTGTACAGCAGACAGCATGTCGTGGCTCGCG
GCCTGTCTAGTGTGCTGTGCCAAAGCTTTAGCGCCAGCAGAGAGCGTGGC
AGAGCCCGCAGGGAGCCGGAGGGGGGGGCGCAAAAAAAACACTCCCCCCT
CGCCGTGCAGCTAATAATAAGGCACTATGGGAGGGAGGGGTGTGGGGAGT
GGGGAAACTATGAGAGAGCTGTAGGTCTATCTCTTATTCGACACGCTCCC
CCGTAAACCCTCGTTTCTTATGTAGTAGGTTTAGGTCGCCGCTGTGTTTC
TTATCGTGTGACTCAGATTGAGTCGTGTTTCTCAACTCAATTTTCTTATT
TTTCGTGGAAAAGTGAGCCTCACTGTCTTAACAAAATATTTCATAACTGT
GGGCGCCAACTGTACTTCTTTGTACTTCTACTTGTTTCGATACCGATAAG
AGGGAGAATCCAGCATTCCCCCACGAGACATGCAAGGCCAGACAAGCAAG
ACCAGTTTATCTGTAGAGAGACGGAACAAAGCGAGTACCCTATTTTGTCG
TGCTATTGTCTGCCCCTCTTACATCCATCACCAGGAGTTCTACAAAAAAT
CAATGCGGCGGGTGGGTGCCCGTGTTCTGGTGAAAAACGCCATTTTGTAA
TCACAGACGTCCTCACGAGTACTTTCATGTTTTCTGGCTTCTCTCTTTGA
AATTGGCTTCAACAAAATCCTTACAACGGGAAGCCTTTTGGAAGATGAAA
TGATATGGTCAGCGCAACTGGTTGACCGTTGGGAAACAAGACATCTGGCT
CGATGTTCGACGCTTCCAAGCCACGAGGCGCGGAGCGGGAGTTTTTTGGG
TTGCCTACCCGGCCCTCTCTCCGCCATGTTACACTTTCCCTTTTTTGACC
TCTCGTTGCCTTTCCATATCTCACCAAATAAGATTGCCTACCCAACGCAG
AGGGTCAATACTACCACGACATGGGCATCCTTCTTTTTGGCGGCCTTTGC
GGTAACAAGGTTGGCAATCCGCTCATGTTTTTCTCTTGCTCGTGTTGTGC
CGCAGAAAGATGAAGGTCGACATCAAGGATCTTATTCTTCTGGAGGCCGA
GCTCAAAAAGTCATGTGACAGTGTAGCACCGCCTGTTGTTCGAGACGCCA
AGGTGAATCTGCTCAAGTACCTTCAAATCCAGACGGTACTGCAGTTCGAA
GCAGCGTACGACACCTTATACTACGAGCTCGACAAGGAGGGAGGGCTCGA
ATGTCTTCGCGAAATCGCCCCGTTTCGGTCGAAGGACTTCTCCCAGCCCA
AGGTCTTGGAGTTACACGGCTGCGGCGATGAGGACGTTCGACTGGCGAAA
CAGCTAGAATTCTACCTTGCCGACGCTGAGCTTGCAAAGCAGCGGTTGGA
CGAGATCATAACGAACGTAGCGGACGACTGGGGGAGATACGAGGTTCAGT
ACGTGGATGTCAAGTCGCGGGAAAGCACGCAACGGAAGGTCAGGAGGTTC
TATGGCGGCGACGTCCGAAAGGTTACTGACATGGCTCGGGTGACTGTGAT
CTGACTCACACCGGAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10029:2106..4723+

>mRNA_Ecto-sp13_S_contig10029.50.1 ID=mRNA_Ecto-sp13_S_contig10029.50.1|Name=mRNA_Ecto-sp13_S_contig10029.50.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10029:2106..4723+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCGACATCAAGGATCTTATTCTTCTGGAGGCCGAGCTCAAAAA
GTCATGTGACAGTGTAGCACCGCCTGTTGTTCGAGACGCCAAGGTGAATC
TGCTCAAGTACCTTCAAATCCAGACGGTACTGCAGTTCGAAGCAGCGTAC
GACACCTTATACTACGAGCTCGACAAGGAGGGAGGGCTCGAATGTCTTCG
CGAAATCGCCCCGTTTCGGTCGAAGGACTTCTCCCAGCCCAAGGTCTTGG
AGTTACACGGCTGCGGCGATGAGGACGTTCGACTGGCGAAACAGCTAGAA
TTCTACCTTGCCGACGCTGAGCTTGCAAAGCAGCGGTTGGACGAGATCAT
AACGAACGTAGCGGACGACTGGGGGAGATACGAGGTTCAGTACGTGGATG
TCAAGTCGCGGGAAAGCACGCAACGGAAGGTCAGGAGGTTCTATGGCGGC
GACGTCCGAAAGGTTACTGACATGGCTCGGGTGACTGTGATCTGA
back to top