mRNA_Ecto-sp13_S_contig16935.4948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: D7G089_ECTSI (Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G089_ECTSI) HSP 1 Score: 336 bits (862), Expect = 1.340e-111 Identity = 174/192 (90.62%), Postives = 178/192 (92.71%), Query Frame = 1
Query: 13 VQMTCSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
+Q+TCSDWTMIPAENLVSAAGGTPTRIAVEL EPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRG GPA GVLPAPADHGEG AGGGLD+VALSTGRV RTREGGVGDRVCVDLIQSL AGEGMLVGSSAKMLALVHAETFETGF +RPFRINAGPVHSYALLGDGSTKYLSELCAGDQ
Sbjct: 181 IQVTCSDWTMIPAENLVSAAGGTPTRIAVELSEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGTDGPATGVLPAPADHGEGGAGGGLDVVALSTGRVTRTREGGVGDRVCVDLIQSLNAGEGMLVGSSAKMLALVHAETFETGFV-----PARPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 367
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A6H5KAS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS3_9PHAE) HSP 1 Score: 290 bits (741), Expect = 2.540e-94 Identity = 167/248 (67.34%), Postives = 173/248 (69.76%), Query Frame = 1
Query: 1 SLTVVQMTCSDWTMIPAENLVSAAGGTPTRIAVE----------------------------------LFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVR----------------FSASSR-----------PFRINAGPVHSYALLGDGSTKY 561
SL VVQ+TCSDWTMIPAENL+SAAGGTPTRIAVE L EPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGI GPA G LP+PADHGEG AGGGLD+VALSTGRV RTREGGVGDRVCVDLIQSLKAGEGML+GSSAKMLALVHAETFETGF F A R PFRINAGPVHSYALLGDG TK+
Sbjct: 21 SLAVVQVTCSDWTMIPAENLISAAGGTPTRIAVEVGRVLVQLRLSVVLAALSASLSFVPTPTYRQNAMLSEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIDGPATGALPSPADHGEGGAGGGLDVVALSTGRVTRTREGGVGDRVCVDLIQSLKAGEGMLIGSSAKMLALVHAETFETGFVPARQGDFYFLCFFAAPEGFVARMRWWWRRGGIGTVPFRINAGPVHSYALLGDGRTKH 268
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A0G4EXJ2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXJ2_VITBC) HSP 1 Score: 181 bits (460), Expect = 3.150e-52 Identity = 102/190 (53.68%), Postives = 127/190 (66.84%), Query Frame = 1
Query: 25 CSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVA-LSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDG-STKYLSELCAGDQ 588
C DW IP EN+V+A+ TPTRI + + SQ+QG AF+LQ+GVDALLL PD +W+AA+ AR RG G P A+ + A G + L RV+ +GGVGDRVC+DLIQ+++ GEG LVGSSA LA VHAET GF +RPFRINAGPVH+Y L+GDG STKYLSE+ AGD+
Sbjct: 87 CDDWVQIPGENMVAASHQTPTRICAVVTDASQIQGLAFSLQLGVDALLLPPDQAMWKAALEARTTRGQ-----GTQPTNAEASQPSAKGVASAHSGLRFARVVSVSDGGVGDRVCLDLIQNMRHGEGALVGSSAMRLAFVHAETIPAGFV-----PARPFRINAGPVHAYCLMGDGKSTKYLSEIQAGDE 266
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A2E7SIA2_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7SIA2_9EURY) HSP 1 Score: 177 bits (449), Expect = 4.360e-51 Identity = 98/188 (52.13%), Postives = 122/188 (64.89%), Query Frame = 1
Query: 25 CSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
C+DW MIP ENLVSA+ GT T+IA + P Q+QGAAFALQ GVDALLL D ++W A QR + A G A A E E + L + +V+ GG+GDRVC+DL+Q L+ GEG+LVGSSA +L L+H ET + F RPFR+NAGPVHSY ++ DGSTKYLSEL AGD+
Sbjct: 84 CTDWKMIPLENLVSASDGTSTKIAASISNPDQLQGAAFALQRGVDALLLPDDEEIWAVAQELAAQR--LADATGADEASATVIEQE-------IELQSMKVIGIETGGLGDRVCIDLVQMLEVGEGLLVGSSASLLVLIHGETIASQFV-----PPRPFRVNAGPVHSYVMMADGSTKYLSELIAGDE 257
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A7M3ZCB2_9ARCH (3-dehydroquinate synthase II n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7M3ZCB2_9ARCH) HSP 1 Score: 172 bits (435), Expect = 7.830e-50 Identity = 97/188 (51.60%), Postives = 121/188 (64.36%), Query Frame = 1
Query: 25 CSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
C+DW MIP ENLV+AA GT T+IA + P Q+QGAAFALQ GVDALLL D ++W A QR + G A A + + ++L L ++ GG+GDRVCVDL+Q L+ GEG+LVGSSA +L LVH ET + F RPFR+NAGPVHSY ++ DGSTKYLSEL AGD+
Sbjct: 11 CADWRMIPLENLVAAADGTATKIAASISNPDQLQGAAFALQRGVDALLLPDDAEMWGVAQELAAQR--LADTTGASEASAMVLDQQ----IELYPLE---ILGIEPGGMGDRVCVDLVQMLEVGEGLLVGSSASLLILVHGETLTSQFV-----PPRPFRVNAGPVHSYVMMADGSTKYLSELVAGDE 184
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A2V4CUB2_9EURY (3-dehydroquinate synthase II n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2V4CUB2_9EURY) HSP 1 Score: 173 bits (439), Expect = 1.430e-49 Identity = 99/193 (51.30%), Postives = 124/193 (64.25%), Query Frame = 1
Query: 25 CSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQR-----GIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
C DWTMIP ENLV+AA G+ TRIA + E SQ+QGA FALQ GVDALLL + +W+AA +R G+V + GVL ++LV L ++ GGVGDRVCVDL+Q+++ GEG+L+GSS+ L LVH ET E+ F RPFR+NAGPVHSY LL DGST+YL EL AGD+
Sbjct: 81 CLDWTMIPLENLVAAAQGSGTRIAASIHEESQLQGATFALQSGVDALLLPAEKSMWDAAELLAAERLAETGGVVEESDGVLREQ-----------VELVPLE---IISVTPGGVGDRVCVDLVQNMELGEGLLIGSSSNALCLVHGETIESDFV-----PPRPFRVNAGPVHSYILLADGSTRYLCELEAGDE 254
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A2D5X3L4_9EURY (3-dehydroquinate synthase II n=3 Tax=Archaea TaxID=2157 RepID=A0A2D5X3L4_9EURY) HSP 1 Score: 172 bits (435), Expect = 5.390e-49 Identity = 97/188 (51.60%), Postives = 121/188 (64.36%), Query Frame = 1
Query: 25 CSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
C+DW MIP ENLV+AA GT T+IA + P Q+QGAAFALQ GVDALLL D ++W A QR + G A A + + ++L L ++ GG+GDRVCVDL+Q L+ GEG+LVGSSA +L LVH ET + F RPFR+NAGPVHSY ++ DGSTKYLSEL AGD+
Sbjct: 84 CADWKMIPLENLVAAADGTATKIAASISNPDQLQGAAFALQRGVDALLLPDDAEMWGVAQELAAQR--LADTTGASEASAMVLDQQ----IELYPLE---ILGIEPGGMGDRVCVDLVQMLEVGEGLLVGSSASLLILVHGETLTSQFV-----PPRPFRVNAGPVHSYVMMADGSTKYLSELVAGDE 257
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A2V3HYA2_9EURY (3-dehydroquinate synthase II n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2V3HYA2_9EURY) HSP 1 Score: 171 bits (432), Expect = 1.670e-48 Identity = 98/190 (51.58%), Postives = 120/190 (63.16%), Query Frame = 1
Query: 19 MTCSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
+TCSDWTMIP ENLV+AA G+PTRI E+ E +Q+QGAAFALQ GVDALLL D LWE +R + G +D E E V L + + G+ DRVCVD++Q L+ GEG+LVGSSA L LVH ET E+ F RPFR+NAGPVH+Y LL DGST+YL EL AG++
Sbjct: 86 LTCSDWTMIPLENLVAAAEGSPTRIVAEVDELAQLQGAAFALQRGVDALLLPSDDALWEEGERLAAER--LAALTGAEEGASDLLEQE-------VLLESVTITSVEVSGLADRVCVDMVQLLEVGEGILVGSSANALCLVHGETLESAFV-----PPRPFRVNAGPVHAYTLLADGSTRYLCELTAGEE 261
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A2E9BAK0_9ARCH (3-dehydroquinate synthase II n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A2E9BAK0_9ARCH) HSP 1 Score: 169 bits (429), Expect = 4.030e-48 Identity = 98/193 (50.78%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 25 CSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWE-----AAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
C+DW MIP ENLV++ GT T+I L + Q+QGAAFALQ GVDALL+ D ++W AA E+ G+ +A ++ G ++L L V GGVGDRVCVDLIQ L+ GEG+LVGSSA +LALVH ET + F RPFRINAGPVHSY ++GDG+TKYLSEL AGD+
Sbjct: 83 CADWKMIPLENLVASTDGTATKIVASLSDVQQLQGAAFALQRGVDALLIPDDEEMWAVAQELAAQKLAEKSGVAETSAIII------------GEVELCELE---VTDIEMGGVGDRVCVDLIQMLEVGEGVLVGSSASLLALVHGETISSQFV-----PPRPFRINAGPVHSYIMMGDGTTKYLSELVAGDE 255
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Match: A0A2E6C7I3_9EURY (3-dehydroquinate synthase II n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6C7I3_9EURY) HSP 1 Score: 166 bits (419), Expect = 1.080e-46 Identity = 95/186 (51.08%), Postives = 119/186 (63.98%), Query Frame = 1
Query: 31 DWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLLGPDPDLWEAAVSAREQRGIVGPAAGVLPAPADHGEGEAGGGLDLVALSTGRVMRTREGGVGDRVCVDLIQSLKAGEGMLVGSSAKMLALVHAETFETGFAVRFSASSRPFRINAGPVHSYALLGDGSTKYLSELCAGDQ 588
+W MIP EN+++A G PT++A ++ P QV GAAFALQIGVDALL+ + D E A+ A+ QRG V + E E + LS V+ +EGGVGDRVCVDLI L GEGML+GS++K L LVH ET E+ F SRPFR+NAG HSY L+GDGST+YLSEL GD+
Sbjct: 83 EWKMIPIENIIAACDGGPTKVAAKITSPEQVLGAAFALQIGVDALLV--NQDTLETALIAKSQRGEV---------TSFESETEV---MTNKKLSLAEVIEVKEGGVGDRVCVDLISMLNIGEGMLIGSNSKSLILVHGETVESEFV-----PSRPFRVNAGAAHSYILMGDGSTRYLSELKMGDE 249 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16935.4948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16935.4948.1 >prot_Ecto-sp13_S_contig16935.4948.1 ID=prot_Ecto-sp13_S_contig16935.4948.1|Name=mRNA_Ecto-sp13_S_contig16935.4948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp MTCSDWTMIPAENLVSAAGGTPTRIAVELFEPSQVQGAAFALQIGVDALLback to top mRNA from alignment at Ecto-sp13_S_contig16935:5..1653+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16935.4948.1 ID=mRNA_Ecto-sp13_S_contig16935.4948.1|Name=mRNA_Ecto-sp13_S_contig16935.4948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1649bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16935:5..1653+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16935:5..1653+ >mRNA_Ecto-sp13_S_contig16935.4948.1 ID=mRNA_Ecto-sp13_S_contig16935.4948.1|Name=mRNA_Ecto-sp13_S_contig16935.4948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16935:5..1653+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |