prot_Ecto-sp13_S_contig1690.4934.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1690.4934.1
Unique Nameprot_Ecto-sp13_S_contig1690.4934.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length325
Homology
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A6H5JPC1_9PHAE (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC1_9PHAE)

HSP 1 Score: 629 bits (1621), Expect = 1.100e-225
Identity = 318/324 (98.15%), Postives = 321/324 (99.07%), Query Frame = 0
Query:    1 MLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLAVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSGGDRGGL 324
            MLMANPKVEALHD+DPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVE DMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVA+T EDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADL+VRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSS DTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSGGDRGGL
Sbjct:  103 MLMANPKVEALHDQDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVAMTTEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLSVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSTDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSGGDRGGL 426          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: D7FZN3_ECTSI (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN3_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 5.950e-104
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0
Query:    1 MLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLAVR 161
            ML+ANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVE DMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADL+VR
Sbjct:  103 MLVANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLSVR 263          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: W4GDG0_9STRA (TFIIE beta domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDG0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.310e-29
Identity = 99/330 (30.00%), Postives = 153/330 (46.36%), Query Frame = 0
Query:    5 NPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSS--ETVGNQTLRSAAPLTVTMNADLAVRKTDVFAE---------DMG-APVEDEGSATIGRVQ--QQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSK--DTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSG 318
            NPKV    D+       F Y AK+ +  ++++L+ +NR   GI + +LKD Y +VE D++ +   G VI + N E      YPRG  FL EL GS  ++ G  +  T ED+   IRRG+A+++  QWFRVS+  +T G  +        +T  +  +VR  ++ A          D G  P++       G +   Q+W A  K      +PL              ++HGC   +R+LWR+T    P D   L + + +  L +    + +  +   RKV  G   ++         RQ+  R  K ITNTHL GT +G+ L   G  G
Sbjct:   84 NPKVRIEGDK-------FAYKAKFDIKTRADVLRQLNRSPEGIPFRDLKDCYKNVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAIKVGDQWFRVSAAPKTGGGSSQPQTFMAGMTSKSVSSVRDLNLSASKKTRYHLNFDSGHVPLDTAFPDPRGNIPLLQRWDAAPKPGRGLTVPL--------------LKHGCTNDVRQLWRDTLRDWPADRLSLERKLLQCGLMTRDMHEANMHRSKMRKVHGGKGNKK-------VMRQRKQRDIK-ITNTHLVGTALGEALAKGGNDG 384          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A2P4XVP3_9STRA (TFA2_Winged_2 domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XVP3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.920e-26
Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 0
Query:   26 AKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSA-----APLTVTMNADLAVRKT-------DVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAK--RQKTARTYKTITNTHLEGTTIGKLL 311
            AKY + NK +LL++++R   G+  E+L D Y  VE D+K +   G++I + N +      Y RG  FL +L G   ++ GS +A +++D+   IRRG+A+R+   WFRVS+    + T R       A  +V+   DL V K        D     +  P  D     +     +W    +  P++ +                V++GC   +R+LWR+T    P D AE  + + +  LT+               D S ++ +RRLK   K  R +  R  K ITN HL GT +G++L
Sbjct:    1 AKYDIKNKVQLLKILDRIPEGMPIEDLIDCYVGVEDDLKELTRTGEIICLKNADKGAEVYYSRGPTFLVDLSGVATVEAGSYLAHSSQDLTGEIRRGDALRVGDNWFRVSAAVKSSSTTRPTPFAGMATKSVSSTRDLNVSKKIKYMFKFDTEHLPLDVPFPDAKRRNVAS-SDRWDLLPRRGPKFQM----------------VKYGCSNDIRQLWRDTMRTWPSDRAEFEKKLVQAGLTTQAKV-----------DASRRQMKRRLKEDKKKNRPRKQRDIK-ITNHHLIGTKLGEIL 271          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: D7FM97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM97_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.490e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query:  237 VPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTA 291
            VPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTA
Sbjct:    9 VPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTA 63          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A7S1BJ87_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ87_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.600e-23
Identity = 77/218 (35.32%), Postives = 115/218 (52.75%), Query Frame = 0
Query:    1 MLMANPKV--EALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAE----DMNQHIRRGEAVRISGQWFRVSSET----VGNQTLRSAAPLTVTMNADLAVRKTDV--FAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGV 206
            ML+ NPKV  E L D        + Y AK+ ++N+++LL  INRC+ G+  +EL DTY  V+RD++ +   G +IAV N+E     L+PRG+ F  EL G IR+    + A+  E    D  + I+RGEAV    QWFRVSS      + +Q  R+ AP +VT    L  +K ++  +   M     DE    + R   + + +   E Q  L ++GV
Sbjct:   93 MLLTNPKVRTETLADGT----VVYGYQAKFNISNRTDLLAQINRCRNGVASKELSDTYDGVDRDLEDLLVGGDIIAVANREAGDRTLFPRGEPFYVELGGIIRLS-NDKRAIFGESADMDYTKEIKRGEAVWTGNQWFRVSSAVKEGPLSDQPPRAQAPSSVTSIFSLP-KKNEIEGYLHAM-----DEKHIPLDRPLNEQALQNMAESQKALTVHGV 299          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: B8C9R6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9R6_THAPS)

HSP 1 Score: 107 bits (266), Expect = 4.500e-22
Identity = 84/264 (31.82%), Postives = 120/264 (45.45%), Query Frame = 0
Query:    1 MLMANPKVEALHDEDPLQETA----FTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRI----------------------------------KPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSET-----VGNQTLRSAAPLTVTMNADLAVRKTDVFA-----EDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEG 215
            ML++NPKV      DP   T     F Y AK++ V +KS LL  INRCK G+ W +L D Y  VE D++++   G+V+ V+N E     L+PRG+ FL EL G + +                                  +  S++  T  D    IRRGEAVRI G+WFRVSS       +  Q  R+ AP +V    DL+ +K +V       +    P++   S  +G    +     KV  +    L+G+ GGD    G
Sbjct:   98 MLLSNPKVNVEEVPDPENPTLSILLFGYRAKFSTVRDKSTLLAQINRCKNGVKWSDLLDAYDGVEGDLQSLLRGGEVLGVLNSEEKDKILFPRGEQFLVELDGVVSVSLPVLPDERAIALITDPVQRQLKRNEVARLKHQRRLASQIVQTDVDPRTQIRRGEAVRIGGEWFRVSSSIRDDLPLDKQPPRAQAPPSVVSMKDLS-KKNEVDGYVRRFDGTTLPLDGGLSEKVGMANLE---NAKVARER---LHGITGGDLGVRG 354          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: K0SH68_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SH68_THAOC)

HSP 1 Score: 94.4 bits (233), Expect = 9.760e-18
Identity = 74/229 (32.31%), Postives = 105/229 (45.85%), Query Frame = 0
Query:    1 MLMANPKVEALHDEDP----LQETAFTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIK----PGSEVALTAEDMNQ------------------------------HIRRGEAVRISGQWFRVSSET-----VGNQTLRSAAPLTVTMNADLA--------VRKTDVFAEDMGAPVEDE 177
            ML  NPKV      DP    L    F+Y AK++ V +K  LL  INR K G+ W +L D Y  VE D++++  AG+V+AV   E  ++ ++PRG+ FL EL G +++K    P  E      D  Q                               IRRGEA++I G+WFRVSS       +  Q  R+ AP +V    DL+        VR+ D     +  P+ D+
Sbjct:  100 MLECNPKVNVEEVPDPENPSLAMNTFSYRAKFSTVRDKPTLLAQINRMKNGVRWADLSDAYDGVEVDLQSLMTAGEVLAV-GPEPKELVVFPRGESFLVELDGCVKLKEEVPPLPEEPTDKTDQQQMAVYKNRLAEYKNARKLQSCLIQTDIDPRLQIRRGEAIKIGGEWFRVSSAVRDDLPLDKQPPRAQAPPSVVSMKDLSKKNDADGYVRRFDAKTIPLDGPLGDD 327          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A7S3PVG4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVG4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.580e-17
Identity = 67/207 (32.37%), Postives = 100/207 (48.31%), Query Frame = 0
Query:    1 MLMANPKVEALHDEDP----LQETAFTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPG---------------------------------SEVALTAEDMNQHIRRGEAVRISGQWFRVSSE----TVGNQTLRSAAPLTVTMNADLAVRKTDV 165
            +L+ N ++      DP    L    F Y AK+  V N++ LL  +N CK GI   +L D+Y  ++ D+  +   G++IAV+N E     L+PRG+ FL EL G I++  G                                 S +A +  D  + IRRGEAV I GQWFRVSS     ++  Q  R+ APL+V+   +L+ +K +V
Sbjct:   97 LLLKNARIRIEEIPDPENPSLTIYTFGYQAKFNNVRNRTGLLAQVNSCKNGIRQRDLLDSYEGIQEDIDQLITGGEIIAVLNSEDKDKILFPRGEPFLAELDGHIKVHDGLLEPIIAPTGSNGNSNEMTLDSMRKAQLEKQQYSFIAESDVDPRKQIRRGEAVCIGGQWFRVSSAIREGSLSEQPARAHAPLSVSSRKELS-KKNEV 302          
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A7S3L736_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L736_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.420e-15
Identity = 69/190 (36.32%), Postives = 90/190 (47.37%), Query Frame = 0
Query:    1 MLMANPKVEALHDEDP----LQETAFTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVE--RDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSI-----------------RIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSET-----VGNQTLRSAAPLTVTMNADLAVR 161
            ML  NPK+      DP    L+   ++Y A Y  V +++ LL  INR   G+    L D Y   E   D+ A+  AG VIAV N E     L+PRG+ FL EL G I                 ++ P +    T  D    IRRGEAV++ GQWFRVSS       +  Q  R+ APL+V    DL+ R
Sbjct:   95 MLKNNPKIHVDQWPDPENPALKVPHYSYQATYPNVRDRATLLAQINREFNGVPMRHLLDAYQEAEVAADISALVTAGDVIAVQNSEDKDKILFPRGEPFLVELDGLIAIPRPNETKSEDTDNREKVPPETVYVETDVDPCPQIRRGEAVQVGGQWFRVSSAVKAGLPLSEQPSRAQAPLSVVSLQDLSKR 284          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JPC1_9PHAE1.100e-22598.15TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
D7FZN3_ECTSI5.950e-10498.14TFIIE beta domain-containing protein n=1 Tax=Ectoc... [more]
W4GDG0_9STRA1.310e-2930.00TFIIE beta domain-containing protein n=8 Tax=Aphan... [more]
A0A2P4XVP3_9STRA1.920e-2629.33TFA2_Winged_2 domain-containing protein (Fragment)... [more]
D7FM97_ECTSI5.490e-24100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1BJ87_9STRA3.600e-2335.32Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
B8C9R6_THAPS4.500e-2231.82Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0SH68_THAOC9.760e-1832.31Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S3PVG4_9STRA5.580e-1732.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3L736_9STRA1.420e-1536.32Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 49..69
NoneNo IPR availablePANTHERPTHR12716:SF8TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETAcoord: 1..305
IPR040501TFA2, Winged helix domain 2PFAMPF18121TFA2_Winged_2coord: 31..80
e-value: 1.1E-7
score: 31.4
IPR016656Transcription initiation factor TFIIE, beta subunitPANTHERPTHR12716TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNITcoord: 1..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1690contigEcto-sp13_S_contig1690:1811..7114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1690.4934.1mRNA_Ecto-sp13_S_contig1690.4934.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1690 299..7868 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1690.4934.1 ID=prot_Ecto-sp13_S_contig1690.4934.1|Name=mRNA_Ecto-sp13_S_contig1690.4934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWE
ELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSI
RIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPL
TVTMNADLAVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYP
LPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFK
KNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNT
HLEGTTIGKLLEGAGTSGGDRGGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040501TFA2_Winged_2
IPR016656TFIIE-bsu