mRNA_Ecto-sp13_S_contig1690.4934.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A6H5JPC1_9PHAE (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC1_9PHAE) HSP 1 Score: 766 bits (1977), Expect = 2.210e-274 Identity = 390/397 (98.24%), Postives = 393/397 (98.99%), Query Frame = 1
Query: 19 STPWLGGSGAVGAAGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLAVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSGGDRGGL 1209
STPWLGGSGAVGA GAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHD+DPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVE DMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVA+T EDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADL+VRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSS DTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSGGDRGGL
Sbjct: 30 STPWLGGSGAVGATGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDQDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVAMTTEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLSVRKTDVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSTDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSGGDRGGL 426
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: D7FZN3_ECTSI (TFIIE beta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN3_ECTSI) HSP 1 Score: 452 bits (1164), Expect = 1.170e-153 Identity = 231/234 (98.72%), Postives = 233/234 (99.57%), Query Frame = 1
Query: 19 STPWLGGSGAVGAAGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLAVR 720
STPWLGGSGAVGAAGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEML+ANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVE DMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADL+VR
Sbjct: 30 STPWLGGSGAVGAAGAFAHTKEPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLVANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVEGDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSAAPLTVTMNADLSVR 263
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: W4GDG0_9STRA (TFIIE beta domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDG0_9STRA) HSP 1 Score: 133 bits (335), Expect = 2.850e-30 Identity = 106/357 (29.69%), Postives = 165/357 (46.22%), Query Frame = 1
Query: 169 TITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSS--ETVGNQTLRSAAPLTVTMNADLAVRKTDVFAE---------DMG-APVEDEGSATIGRVQ--QQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSK--DTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTARTYKTITNTHLEGTTIGKLLEGAGTSG 1191
T+ +I T +DL + V E + NPKV D+ F Y AK+ + ++++L+ +NR GI + +LKD Y +VE D++ + G VI + N E YPRG FL EL GS ++ G + T ED+ IRRG+A+++ QWFRVS+ +T G + +T + +VR ++ A D G P++ G + Q+W A K +PL ++HGC +R+LWR+T P D L + + + L + + + + RKV G ++ RQ+ R K ITNTHL GT +G+ L G G
Sbjct: 57 TVPQIYQKTGIDLASPGEYEVCERVRNNPKVRIEGDK-------FAYKAKFDIKTRADVLRQLNRSPEGIPFRDLKDCYKNVEDDLRDLTRIGTVICIRNTEDGNDVYYPRGGQFLVELSGSGLVEHGCFIVATKEDITSEIRRGDAIKVGDQWFRVSAAPKTGGGSSQPQTFMAGMTSKSVSSVRDLNLSASKKTRYHLNFDSGHVPLDTAFPDPRGNIPLLQRWDAAPKPGRGLTVPL--------------LKHGCTNDVRQLWRDTLRDWPADRLSLERKLLQCGLMTRDMHEANMHRSKMRKVHGGKGNKK-------VMRQRKQRDIK-ITNTHLVGTALGEALAKGGNDG 384
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A7S1BJ87_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ87_9STRA) HSP 1 Score: 134 bits (336), Expect = 8.670e-30 Identity = 112/361 (31.02%), Postives = 168/361 (46.54%), Query Frame = 1
Query: 82 EPEKKSDAELQADVVDFLK-RRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKV--EALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAE----DMNQHIRRGEAVRISGQWFRVSSET----VGNQTLRSAAPLTVTMNADLAVRKTDV--FAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGG----------------DTEFEG--------------------------RAVRHGCCKSLRELWRETRAMVPG-DPAELHQLMFKKNL 996
E + +SD E Q +++ +L+ +R G G T +I +DL+ G D V EML+ NPKV E L D + Y AK+ ++N+++LL INRC+ G+ +EL DTY V+RD++ + G +IAV N+E L+PRG+ F EL G IR+ + A+ E D + I+RGEAV QWFRVSS + +Q R+ AP +VT L +K ++ + M DE + R + + + E Q L ++GV F G RA RHGC +R+++ T+A V +LHQ + K NL
Sbjct: 41 EEDVRSDLEKQYEIIAYLQGQRSAPGMGWITPRQIESNLRIDLQ-GDDVPVAEMLLTNPKVRTETLAD----GTVVYGYQAKFNISNRTDLLAQINRCRNGVASKELSDTYDGVDRDLEDLLVGGDIIAVANREAGDRTLFPRGEPFYVELGGIIRLS-NDKRAIFGESADMDYTKEIKRGEAVWTGNQWFRVSSAVKEGPLSDQPPRAQAPSSVTSIFSLP-KKNEIEGYLHAM-----DEKHIPLDRPLNEQALQNMAESQKALTVHGVGAAASLLLNPTAMRKRPRSSNAFAGSVASLSKVQQNNGPSLTLSSPAMVYCRARRHGCTSDVRDMFLATKAEVSNLSECDLHQKLVKLNL 389
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: B8C9R6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9R6_THAPS) HSP 1 Score: 131 bits (330), Expect = 1.120e-28 Identity = 104/312 (33.33%), Postives = 146/312 (46.79%), Query Frame = 1
Query: 94 KSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDEDPLQETA----FTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRI----------------------------------KPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSET-----VGNQTLRSAAPLTVTMNADLAVRKTDVFA-----EDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEG 882
KSD E QADV+ FL+ G P T+ S G D+ GRD+ V +ML++NPKV DP T F Y AK++ V +KS LL INRCK G+ W +L D Y VE D++++ G+V+ V+N E L+PRG+ FL EL G + + + S++ T D IRRGEAVRI G+WFRVSS + Q R+ AP +V DL+ +K +V + P++ S +G + KV + L+G+ GGD G
Sbjct: 51 KSDLEKQADVLLFLRHHRSSGCLPPTVIYKSLGIDLT-EGGRDDSVAKMLLSNPKVNVEEVPDPENPTLSILLFGYRAKFSTVRDKSTLLAQINRCKNGVKWSDLLDAYDGVEGDLQSLLRGGEVLGVLNSEEKDKILFPRGEQFLVELDGVVSVSLPVLPDERAIALITDPVQRQLKRNEVARLKHQRRLASQIVQTDVDPRTQIRRGEAVRIGGEWFRVSSSIRDDLPLDKQPPRAQAPPSVVSMKDLS-KKNEVDGYVRRFDGTTLPLDGGLSEKVGMANLE---NAKVARER---LHGITGGDLGVRG 354
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A2P4XVP3_9STRA (TFA2_Winged_2 domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XVP3_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.250e-24 Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 1
Query: 313 AKYAVTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSETVGNQTLRSA-----APLTVTMNADLAVRKT-------DVFAEDMGAPVEDEGSATIGRVQQQWSAKGKVEPQYPLPLNGVYGGDTEFEGRAVRHGCCKSLRELWRETRAMVPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAK--RQKTARTYKTITNTHLEGTTIGKLL 1170
AKY + NK +LL++++R G+ E+L D Y VE D+K + G++I + N + Y RG FL +L G ++ GS +A +++D+ IRRG+A+R+ WFRVS+ + T R A +V+ DL V K D + P D + +W + P++ + V++GC +R+LWR+T P D AE + + + LT+ D S ++ +RRLK K R + R K ITN HL GT +G++L
Sbjct: 1 AKYDIKNKVQLLKILDRIPEGMPIEDLIDCYVGVEDDLKELTRTGEIICLKNADKGAEVYYSRGPTFLVDLSGVATVEAGSYLAHSSQDLTGEIRRGDALRVGDNWFRVSAAVKSSSTTRPTPFAGMATKSVSSTRDLNVSKKIKYMFKFDTEHLPLDVPFPDAKRRNVAS-SDRWDLLPRRGPKFQM----------------VKYGCSNDIRQLWRDTMRTWPSDRAEFEKKLVQAGLTTQAKV-----------DASRRQMKRRLKEDKKKNRPRKQRDIK-ITNHHLIGTKLGEIL 271
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: D7FM97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM97_ECTSI) HSP 1 Score: 102 bits (254), Expect = 7.470e-23 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 946 VPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTA 1110
VPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTA
Sbjct: 9 VPGDPAELHQLMFKKNLTSSKDTSAFKKPKRKVDDGSAKRERRRLKRLAKRQKTA 63
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: K0SH68_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SH68_THAOC) HSP 1 Score: 113 bits (282), Expect = 1.320e-22 Identity = 91/278 (32.73%), Postives = 130/278 (46.76%), Query Frame = 1
Query: 91 KKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDEDP----LQETAFTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIK----PGSEVALTAEDMNQ------------------------------HIRRGEAVRISGQWFRVSSET-----VGNQTLRSAAPLTVTMNADLA--------VRKTDVFAEDMGAPVEDE 768
+KSD E QADV+ FL+ G P + + G D+ G D V++ML NPKV DP L F+Y AK++ V +K LL INR K G+ W +L D Y VE D++++ AG+V+AV E ++ ++PRG+ FL EL G +++K P E D Q IRRGEA++I G+WFRVSS + Q R+ AP +V DL+ VR+ D + P+ D+
Sbjct: 52 QKSDLEKQADVLVFLRNHRSAGFLPPAVIYKNLGIDLS-DGGVDSAVVKMLECNPKVNVEEVPDPENPSLAMNTFSYRAKFSTVRDKPTLLAQINRMKNGVRWADLSDAYDGVEVDLQSLMTAGEVLAV-GPEPKELVVFPRGESFLVELDGCVKLKEEVPPLPEEPTDKTDQQQMAVYKNRLAEYKNARKLQSCLIQTDIDPRLQIRRGEAIKIGGEWFRVSSAVRDDLPLDKQPPRAQAPPSVVSMKDLSKKNDADGYVRRFDAKTIPLDGPLGDD 327
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A7S3PVG4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVG4_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.980e-22 Identity = 88/264 (33.33%), Postives = 128/264 (48.48%), Query Frame = 1
Query: 73 HTKEP-EKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKG-RDEHVLEMLMANPKVEALHDEDP----LQETAFTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVERDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSIRIKPG---------------------------------SEVALTAEDMNQHIRRGEAVRISGQWFRVSSE----TVGNQTLRSAAPLTVTMNADLAVRKTDV 732
H +P K+D E Q DV+ FL+ G P +I I VDL +G DE V ++L+ N ++ DP L F Y AK+ V N++ LL +N CK GI +L D+Y ++ D+ + G++IAV+N E L+PRG+ FL EL G I++ G S +A + D + IRRGEAV I GQWFRVSS ++ Q R+ APL+V+ +L+ +K +V
Sbjct: 42 HADQPGHDKTDLEKQYDVIQFLQAHRSSGCLPPSI--IYKSIRVDLSEGGHDESVTKLLLKNARIRIEEIPDPENPSLTIYTFGYQAKFNNVRNRTGLLAQVNSCKNGIRQRDLLDSYEGIQEDIDQLITGGEIIAVLNSEDKDKILFPRGEPFLAELDGHIKVHDGLLEPIIAPTGSNGNSNEMTLDSMRKAQLEKQQYSFIAESDVDPRKQIRRGEAVCIGGQWFRVSSAIREGSLSEQPARAHAPLSVSSRKELS-KKNEV 302
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Match: A0A7S3L736_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L736_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.980e-20 Identity = 83/242 (34.30%), Postives = 116/242 (47.93%), Query Frame = 1
Query: 82 EPEKKSDAELQADVVDFLKRRLQLGKGPATITEISDGTDVDLRKGRDEHVLEMLMANPKVEALHDEDP----LQETAFTYMAKYA-VTNKSELLQLINRCKGGICWEELKDTYSSVE--RDMKAMQEAGKVIAVVNKETHKMNLYPRGDVFLTELPGSI-----------------RIKPGSEVALTAEDMNQHIRRGEAVRISGQWFRVSSET-----VGNQTLRSAAPLTVTMNADLAVR 720
+ + K D E Q D+++FL++ + G ++ S G D++L D V ML NPK+ DP L+ ++Y A Y V +++ LL INR G+ L D Y E D+ A+ AG VIAV N E L+PRG+ FL EL G I ++ P + T D IRRGEAV++ GQWFRVSS + Q R+ APL+V DL+ R
Sbjct: 47 QAQNKPDLEKQFDILNFLQKHREAGGLAPSVIYKSTGIDLEL----DTKVAAMLKNNPKIHVDQWPDPENPALKVPHYSYQATYPNVRDRATLLAQINREFNGVPMRHLLDAYQEAEVAADISALVTAGDVIAVQNSEDKDKILFPRGEPFLVELDGLIAIPRPNETKSEDTDNREKVPPETVYVETDVDPCPQIRRGEAVQVGGQWFRVSSAVKAGLPLSEQPSRAQAPLSVVSLQDLSKR 284 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1690.4934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1690.4934.1 >prot_Ecto-sp13_S_contig1690.4934.1 ID=prot_Ecto-sp13_S_contig1690.4934.1|Name=mRNA_Ecto-sp13_S_contig1690.4934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp MLMANPKVEALHDEDPLQETAFTYMAKYAVTNKSELLQLINRCKGGICWEback to top mRNA from alignment at Ecto-sp13_S_contig1690:299..7868+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1690.4934.1 ID=mRNA_Ecto-sp13_S_contig1690.4934.1|Name=mRNA_Ecto-sp13_S_contig1690.4934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1690:299..7868+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1690:299..7868+ >mRNA_Ecto-sp13_S_contig1690.4934.1 ID=mRNA_Ecto-sp13_S_contig1690.4934.1|Name=mRNA_Ecto-sp13_S_contig1690.4934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1690:299..7868+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |