mRNA_Ecto-sp13_S_contig16892.4924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16892.4924.1
Unique NamemRNA_Ecto-sp13_S_contig16892.4924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16892.4924.1 vs. uniprot
Match: A0A6H5KA99_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA99_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 8.810e-67
Identity = 128/147 (87.07%), Postives = 132/147 (89.80%), Query Frame = -1 
Query:    1 AEEDGQSNLEVKSSRSSRDRSGPGEEVTTPCRESGERPAVPREPSAETGDTPTPFLESKHATNRHHDRDGNR--RTAPADGKGGAGCDGGINQAENAGDYGRRLGRAQRETVPETVAETVPHQAERKGPSDAVGGDAAPAPENERKA 435
            AEED QSNLEVKSSRSSRDRS PG+EVTTPCRESGERPAVPREPSAETG+TPTP LESK ATNRHHDRDGNR   TAPAD KGGAGCDG INQAENAGDY RRLG+AQRETVPETVAE VP Q +RKG SDAVGGDA PAPENERKA
Sbjct:  600 AEEDVQSNLEVKSSRSSRDRSRPGKEVTTPCRESGERPAVPREPSAETGNTPTPSLESKQATNRHHDRDGNRGTATAPADDKGGAGCDGEINQAENAGDYRRRLGQAQRETVPETVAEIVPRQTDRKGSSDAVGGDAVPAPENERKA 746
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BLAST of mRNA_Ecto-sp13_S_contig16892.4924.1 vs. uniprot
Match: D7FQ76_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ76_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 4.140e-66
Identity = 126/145 (86.90%), Postives = 130/145 (89.66%), Query Frame = -1 
Query:    1 AEEDGQSNLEVKSSRSSRDRSGPGEEVTTPCRESGERPAVPREPSAETGDTPTPFLESKHATNRHHDRDGNRRTAPADGKGGAGCDGGINQAENAGDYGRRLGRAQRETVPETVAETVPHQAERKGPSDAVGGDAAPAPENERKA 435
            AEEDGQSNLEVKS+RS RDRS PGEEVTTPCRESGER AVP EPSAETG+ PTP  ESKHATNRHHDRDGNR TAPAD KGGA  DG INQAENA +Y RRLG+AQRETVPETVAETVP QAERKGPSDAVGGDAAPAPENERKA
Sbjct:  536 AEEDGQSNLEVKSTRSCRDRSRPGEEVTTPCRESGERTAVPGEPSAETGNAPTPSSESKHATNRHHDRDGNRGTAPADDKGGADSDGEINQAENAREYRRRLGQAQRETVPETVAETVPRQAERKGPSDAVGGDAAPAPENERKA 680
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16892.4924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KA99_9PHAE8.810e-6787.07Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FQ76_ECTSI4.140e-6686.90Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16892contigEcto-sp13_S_contig16892:2..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size436
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.9196498-CDS-Ecto-sp13_S_contig16892:1..4361681462884.9196498-CDS-Ecto-sp13_S_contig16892:1..436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16892 2..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16892.4924.1prot_Ecto-sp13_S_contig16892.4924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16892 2..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16892.4924.1

>prot_Ecto-sp13_S_contig16892.4924.1 ID=prot_Ecto-sp13_S_contig16892.4924.1|Name=mRNA_Ecto-sp13_S_contig16892.4924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
GLPLVLGGGGGIAANSIAGPLPLGLMGDGFRNGLRNGLPLGPSQPTAIIS
GVLGLVNPPIAARAALAVGRSGPAVAIAVVVTVGCVFRLQEWCWRISRFG
RGLSWYRRPLARLTARRGDLLPWPRTIATAPARLHLQVALPVFLG
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mRNA from alignment at Ecto-sp13_S_contig16892:2..437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16892.4924.1 ID=mRNA_Ecto-sp13_S_contig16892.4924.1|Name=mRNA_Ecto-sp13_S_contig16892.4924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=436bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16892:2..437+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTTCCGCTCGTTCTCGGGGGCGGGGGCGGCATCGCCGCCAACAGCAT
CGCTGGGCCCCTTCCGCTCGGCCTGATGGGGGACGGTTTCCGCAACGGTC
TCCGGAACGGTCTCCCGCTGGGCCCGTCCCAGCCGACGGCCATAATCTCC
GGCGTTCTCGGCTTGGTTAATCCCCCCATCGCAGCCCGCGCCGCCCTTGC
CGTCGGCAGGAGCGGTCCGGCGGTTGCCATCGCGGTCGTGGTGACGGTTG
GTTGCGTGTTTCGACTCCAAGAATGGTGTTGGCGTATCTCCCGTTTCGGC
CGAGGGCTCTCTTGGTACCGCCGGCCTCTCGCCAGACTCACGGCAAGGCG
TGGTGACCTCCTCCCCTGGCCCAGAACGATCGCGACTGCTCCTGCTCGAC
TTCACCTCCAAGTTGCTCTGCCCGTCTTCCTCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16892:2..437+

>mRNA_Ecto-sp13_S_contig16892.4924.1 ID=mRNA_Ecto-sp13_S_contig16892.4924.1|Name=mRNA_Ecto-sp13_S_contig16892.4924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16892:2..437+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTTCCGCTCGTTCTCGGGGGCGGGGGCGGCATCGCCGCCAACAGCAT
CGCTGGGCCCCTTCCGCTCGGCCTGATGGGGGACGGTTTCCGCAACGGTC
TCCGGAACGGTCTCCCGCTGGGCCCGTCCCAGCCGACGGCCATAATCTCC
GGCGTTCTCGGCTTGGTTAATCCCCCCATCGCAGCCCGCGCCGCCCTTGC
CGTCGGCAGGAGCGGTCCGGCGGTTGCCATCGCGGTCGTGGTGACGGTTG
GTTGCGTGTTTCGACTCCAAGAATGGTGTTGGCGTATCTCCCGTTTCGGC
CGAGGGCTCTCTTGGTACCGCCGGCCTCTCGCCAGACTCACGGCAAGGCG
TGGTGACCTCCTCCCCTGGCCCAGAACGATCGCGACTGCTCCTGCTCGAC
TTCACCTCCAAGTTGCTCTGCCCGTCTTCCTCGGC
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