mRNA_Ecto-sp13_S_contig1687.4912.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1687.4912.1
Unique NamemRNA_Ecto-sp13_S_contig1687.4912.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1687.4912.1 vs. uniprot
Match: D7G6G7_ECTSI (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G7_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 1.330e-88
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:    1 MSTSSLECMACLGFFGRSSGQSLRAIKRLHATPSDLIQRGPDENVTPDCVYRSHHPWKAVWDRNAFCGYCDRLVSIGNNFLGCLVCNSVAHRSCHSSSLEALVTSLCEEAVRQMEEEKTPPEECVDRNQLRIMEAGNDDWVCKDCLEELTEASKASSSHS 480
            M TSSL+CMA  GF G SSG+SLRAIK LHATPSDL QR  +ENV  DCVYRSHHPWKAVWDRNAFCGYCDRLVSIGNNFLGC VCNSVAHRSCHSS+L+ALV SLCEEAVRQ+EEEK P  E VDRNQLR  + GN++WVCKDCLEELTEASKASSSHS
Sbjct:    1 MDTSSLKCMAFHGFSGHSSGKSLRAIKGLHATPSDLTQRVSEENVIADCVYRSHHPWKAVWDRNAFCGYCDRLVSIGNNFLGCFVCNSVAHRSCHSSNLQALVGSLCEEAVRQIEEEKEP--ESVDRNQLRRTKVGNNEWVCKDCLEELTEASKASSSHS 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1687.4912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6G7_ECTSI1.330e-8881.88Phorbol-ester/DAG-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1687contigEcto-sp13_S_contig1687:5041..6804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-05_006140.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.1042707-CDS-Ecto-sp13_S_contig1687:5040..51051681462884.1042707-CDS-Ecto-sp13_S_contig1687:5040..5105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1687 5041..5105 +
1681462884.1144118-CDS-Ecto-sp13_S_contig1687:5310..55451681462884.1144118-CDS-Ecto-sp13_S_contig1687:5310..5545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1687 5311..5545 +
1681462884.1239421-CDS-Ecto-sp13_S_contig1687:6147..62341681462884.1239421-CDS-Ecto-sp13_S_contig1687:6147..6234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1687 6148..6234 +
1681462884.1330175-CDS-Ecto-sp13_S_contig1687:6708..68041681462884.1330175-CDS-Ecto-sp13_S_contig1687:6708..6804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1687 6709..6804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1687.4912.1prot_Ecto-sp13_S_contig1687.4912.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1687 5041..6804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1687.4912.1

>prot_Ecto-sp13_S_contig1687.4912.1 ID=prot_Ecto-sp13_S_contig1687.4912.1|Name=mRNA_Ecto-sp13_S_contig1687.4912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MSTSSLECMACLGFFGRSSGQSLRAIKRLHATPSDLIQRGPDENVTPDCV
YRSHHPWKAVWDRNAFCGYCDRLVSIGNNFLGCLVCNSVAHRSCHSSSLE
ALVTSLCEEAVRQMEEEKTPPEECVDRNQLRIMEAGNDDWVCKDCLEELT
EASKASSSHS*
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mRNA from alignment at Ecto-sp13_S_contig1687:5041..6804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1687.4912.1 ID=mRNA_Ecto-sp13_S_contig1687.4912.1|Name=mRNA_Ecto-sp13_S_contig1687.4912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1687:5041..6804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACGTCATCTCTGGAATGTATGGCCTGCCTTGGCTTCTTTGGGCG
TTCGTCCGGCCAGAGGTGTGAGCATTGGAACATTGATGAGCGAATTTATT
GATGTACATGCGGGCCAATCCAGGCGTTCAACACACCCCCCTGGCTCTTG
AGCGTCTCTCAGTGTAACCTTTGAATACGTTGAATCAAGAACTCTCTTGT
ACACGCAATGTCACTCCCCTCCCCCTCCATATGACGGTGCGCAATCTTCG
CCCCCGCGCGCCGGAATCAGCTTGAGGGCCATCAAGAGGCTTCACGCCAC
ACCGTCCGACTTAATTCAGCGCGGTCCCGACGAAAATGTCACCCCCGACT
GTGTCTACCGATCGCACCACCCTTGGAAAGCGGTGTGGGATCGGAACGCG
TTCTGCGGGTACTGCGACCGGCTCGTGTCCATCGGAAACAACTTTCTGGG
GTGCCTCGTTTGCAACTCGGTGGCGCACAGGAGCTGCCACTCCTCGAGTC
TCGAGGTACAGCGCTCACCGGGACCCCTGGTCCGGCCGTGGACAAACTGC
CGACCTTCTGTACAATCTCCACACGCAACGCAAACTCCCAATCGGTCTGG
TGGAATACTGAGTACTGATAGCTTTGGAGTAAAAGCGGGATGGTTAACAG
CGATAAAAAAGATATAGTTATCATGAGAGTGTCTCGGAAATTCACGAGAG
AGAATATGGGTGTGGGCGCATTGGCGTGTGAGGTACGGAGAAGAACCTTA
TACGCCCTAACCCCTGGTCAACGGATTCAAAACCGTTCTGCATTGCATAT
CCATATTGGCCTGCTGTCACTTGACTCCCAAATCAATCTTCGGCGCATTA
CTCACACTATCGCCAACCACATAGAGCGCACTACATAACGTGCCGGGGCT
CATCTCGGTTCCAGCTTGCTCTCAACCGAGGGTTGTGCTGCACTCAGGGC
TCAGCCTTGATTTCCTCAAAGTGAATAGGGTTTGACAGGAGGAAAGCCAA
CCCGTGCCTGGTGTACAACACCATCGAATTACCTGCTGCTACGGGGTGAT
GCTCTCTGATCGACTACTTTCGGATGAACCTTCGTCCCACCCAACTCACT
CTCGCAGGCGCTTGTGACGAGCCTTTGCGAGGAGGCGGTACGGCAGATGG
AAGAGGAGAAGACGCCCCCAGAGGAGTGCGTAGATCGGAACCAGGTCGGA
GGCAGAACCAATGCTCTCGTGCAAAATCTCTCCTCTTTGTGTCGTTGAGT
TGCCACCTTGTTGCTGCCGAAAATCTTATTTTGCGAATCGCAAGAGCTCA
AATACTAGCTCTGGCGTGAGCTGTGTGCCGACCACACCATCGAACCAAGA
AGGTGGGCAAGAATGACCCCGCCGACAACGGATGCGGATTGTCGAAAATT
GGAAAAATCTAGAACAGTTGTTGTTGGTAACCTGTGTTTCGTCGCGGGAG
AAACGGCGAGGATGGTAGCTAGTGCGAGAGGTGGTAGTATCGTGTCGGTT
CCTTTCCACCCCAGTCCCCTGAGCGTCGACCGCATAGACGTTTCTGCCTT
TGCCTCCTTCTTGGTGCCCCTTTCGCGTATTTTGGCCGTGCCCTTCGTCC
TTTTTGATTTTCTCCACCTCGGCCTACTGTTTAGCTCGTATGTTCATGTG
CCCGGCTTGACAACGCAGCTGCGGATAATGGAAGCTGGAAACGATGATTG
GGTGTGCAAGGACTGCTTGGAGGAGCTCACGGAAGCATCGAAGGCGTCTT
CTTCGCATTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1687:5041..6804+

>mRNA_Ecto-sp13_S_contig1687.4912.1 ID=mRNA_Ecto-sp13_S_contig1687.4912.1|Name=mRNA_Ecto-sp13_S_contig1687.4912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1687:5041..6804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACGTCATCTCTGGAATGTATGGCCTGCCTTGGCTTCTTTGGGCG
TTCGTCCGGCCAGAGCTTGAGGGCCATCAAGAGGCTTCACGCCACACCGT
CCGACTTAATTCAGCGCGGTCCCGACGAAAATGTCACCCCCGACTGTGTC
TACCGATCGCACCACCCTTGGAAAGCGGTGTGGGATCGGAACGCGTTCTG
CGGGTACTGCGACCGGCTCGTGTCCATCGGAAACAACTTTCTGGGGTGCC
TCGTTTGCAACTCGGTGGCGCACAGGAGCTGCCACTCCTCGAGTCTCGAG
GCGCTTGTGACGAGCCTTTGCGAGGAGGCGGTACGGCAGATGGAAGAGGA
GAAGACGCCCCCAGAGGAGTGCGTAGATCGGAACCAGCTGCGGATAATGG
AAGCTGGAAACGATGATTGGGTGTGCAAGGACTGCTTGGAGGAGCTCACG
GAAGCATCGAAGGCGTCTTCTTCGCATTCTTGA
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