mRNA_Ecto-sp13_S_contig1686.4903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1686.4903.1
Unique NamemRNA_Ecto-sp13_S_contig1686.4903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1686.4903.1 vs. uniprot
Match: A0A6H5KGA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.340e-38
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 3 
Query:    9 DSGSRTKDGRHPGGGRRSALPPSHDKGHKPLGKPKSWSLASSRTHGLAPPPHPDETPAAGRGASTPASPARPSFESDPSPTSAH 260
            DSGS  KDGRHP GGR SALPPSHDKGHKPL KPKSWSLASS+THGLAPPPHPDETPAAGRGAST ASPARPSFESDPSP+SAH
Sbjct:  364 DSGSSAKDGRHPDGGRSSALPPSHDKGHKPLSKPKSWSLASSKTHGLAPPPHPDETPAAGRGASTLASPARPSFESDPSPSSAH 447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1686.4903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGA5_9PHAE1.340e-3890.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1686contigEcto-sp13_S_contig1686:9392..10147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_011240.2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.5653093-CDS-Ecto-sp13_S_contig1686:9391..95651681462883.5653093-CDS-Ecto-sp13_S_contig1686:9391..9565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1686 9392..9565 -
1681462883.5741005-CDS-Ecto-sp13_S_contig1686:10060..101471681462883.5741005-CDS-Ecto-sp13_S_contig1686:10060..10147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1686 10061..10147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1686.4903.1prot_Ecto-sp13_S_contig1686.4903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1686 9392..10147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1686.4903.1

>prot_Ecto-sp13_S_contig1686.4903.1 ID=prot_Ecto-sp13_S_contig1686.4903.1|Name=mRNA_Ecto-sp13_S_contig1686.4903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
SGPIAAAARRTAATRVVVAAAHCPLATTKGTNHSASPSRGPWLPPGPMVW
LLHPIRTRRQQQAAVPQPPRLLLDPRLSRTLRQPLHM
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mRNA from alignment at Ecto-sp13_S_contig1686:9392..10147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1686.4903.1 ID=mRNA_Ecto-sp13_S_contig1686.4903.1|Name=mRNA_Ecto-sp13_S_contig1686.4903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1686:9392..10147- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGCCGATAGCGGCAGCCGCACGAAGGACGGCCGCCACCCGGGTGGT
GGTCGCCGCAGCGCACTGCCCCCTAGCCACGACAAAGGCGAGAGAGAGCT
TCATGGCTAATATGGCTCCTTTGCCCATACGGGGCAGAGGGCGGGTCGAT
TCGCTAGAAGAGAGCAGGGCAGGGTGTGCTTGCACGTCAGCTTTGTACCG
AACGGTTGCTCCTTTCCCCTATGTGGTTGGTGGTAAAGAGCAGCATGTAT
ATGCTGTTTTCCTTTTTTTCACGTCGGCAAGTCTTGACGACCCGGACTCT
TCCAACCACAGCCAAGAGAGGGTGTGTGAGTCGTGAGTATGCTGGGTGTT
CTCGTCAAAGCCCCACTGGCTTGCATGCCGTCGGGAAAAGGCACGTATTT
TCCAGCCCAAGCTTGTGTGTCTGACTGTCTTAGCCAAGAAGTGGATTGGA
TTTATTGGTTCAACACCGTCCTCGTTTCGCGCTTTTCTCGAGCGGAACTA
GGCACACAACCCACTTGCAATCATCGAAGTCACAACGTCCCTCTCCTTGC
CAACGCTTTGGATCCACACACACGCACTGCAGGGCACAAACCACTCGGCA
AGCCCAAGTCGTGGTCCTTGGCTTCCTCCAGGACCCATGGTCTGGCTCCT
CCACCCCATCCGGACGAGACGCCAGCAGCAGGCCGCGGTGCCTCAACCCC
CGCGTCTCCTGCTCGACCCTCGTTTGAGTCGGACCCTTCGCCAACCTCTG
CACATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1686:9392..10147-

>mRNA_Ecto-sp13_S_contig1686.4903.1 ID=mRNA_Ecto-sp13_S_contig1686.4903.1|Name=mRNA_Ecto-sp13_S_contig1686.4903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1686:9392..10147- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGCCGATAGCGGCAGCCGCACGAAGGACGGCCGCCACCCGGGTGGT
GGTCGCCGCAGCGCACTGCCCCCTAGCCACGACAAAGGGCACAAACCACT
CGGCAAGCCCAAGTCGTGGTCCTTGGCTTCCTCCAGGACCCATGGTCTGG
CTCCTCCACCCCATCCGGACGAGACGCCAGCAGCAGGCCGCGGTGCCTCA
ACCCCCGCGTCTCCTGCTCGACCCTCGTTTGAGTCGGACCCTTCGCCAAC
CTCTGCACATG
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