mRNA_Ecto-sp13_S_contig10511.490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10511.490.1
Unique NamemRNA_Ecto-sp13_S_contig10511.490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: D7FXY2_ECTSI (Ketoacyl_synth_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY2_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.100e-79
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN
Sbjct:  295 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 415
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A6H5JDP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP7_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 4.520e-76
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN
Sbjct:  720 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 840
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A836C9U2_9STRA (Hydroxymethylglutaryl-coenzyme A synthase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U2_9STRA)

HSP 1 Score: 182 bits (461), Expect = 8.380e-51
Identity = 88/121 (72.73%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLLETQISNSA+HGASMD+ HIA E+ERFL ++E   G++R  IA  GVYFSHET THA+PTASCA+NE+WALR CFG  LL  L +INTKGFTGHPMGVSFEDVAAV+VL  G++PPTAN
Sbjct:  903 RLLETQISNSAHHGASMDRVHIAREMERFLASVEARHGVTRADIAARGVYFSHETGTHASPTASCAYNEIWALRACFGA-LLPSLTVINTKGFTGHPMGVSFEDVAAVQVLRSGVLPPTAN 1022
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: K0TIT3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIT3_THAOC)

HSP 1 Score: 166 bits (421), Expect = 1.700e-50
Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLL TQ SNSAYHGA++D+ HIA EL+RFL ++E   GI R  IA  GVYFSHET THA+P ASC+ NEV ALR  FG++LLS+L+I+NTKGFTGHPMGVSFEDVAAVEVL R  +PP  N
Sbjct:    1 RLLATQYSNSAYHGAALDRKHIASELDRFLTSVEVVHGIGRAEIACHGVYFSHETSTHASPQASCSGNEVAALRSAFGDDLLSKLLILNTKGFTGHPMGVSFEDVAAVEVLMRQTVPPVPN 121
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A4D9DA31_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA31_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.060e-49
Identity = 83/121 (68.60%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RL++TQ SNSAYHGA++D+HHIA ELERFLVA+E+ +GI+R AIA  GVY SHET THA+  +SCA NE++ALR CFGEE +  LVI+NTKG+TGHPMGVSFED+AAV++L  GIIP  AN
Sbjct: 1168 RLIDTQYSNSAYHGAALDQHHIAGELERFLVALEKKFGITRQAIAREGVYLSHETSTHASDASSCAANEIFALRTCFGEEGMKNLVILNTKGYTGHPMGVSFEDIAAVQILRSGIIPRVAN 1288
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A7S2V7B7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V7B7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.380e-47
Identity = 77/121 (63.64%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLL TQ SNSA+HGA++D+ HI  EL+RFL  +E   GIS+  +A  GVYFSHETCTHA+  +SCA NEV ALR  FG+EL+++L+I+NTKG+TGHPMGVSFEDVAAVEVL +  +PP  N
Sbjct:   36 RLLHTQYSNSAFHGAALDRKHIGSELKRFLEDIEIVHGISKAELATHGVYFSHETCTHASSASSCAGNEVAALRSAFGDELVAKLLILNTKGYTGHPMGVSFEDVAAVEVLMQQKVPPVPN 156
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A7S2XTA8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTA8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.410e-46
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLL TQ SNSAYHGA++D+ HIA EL+RFL  +E   GIS+  IA  GVYFSHET THA+  +SC+ NEV ALR+  G+ LLS+L+I+NTKGFTGHPMGVSFEDVAAVEVL + ++PP  N
Sbjct:  160 RLLATQYSNSAYHGAALDRKHIASELKRFLTDVELIHGISKAEIATHGVYFSHETSTHASSASSCSGNEVAALREALGDHLLSKLLILNTKGFTGHPMGVSFEDVAAVEVLMKQVVPPVVN 280
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A7S2RGL0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGL0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 7.290e-46
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLL TQ SNSA+HGA++D+ HIA ELERFL  +E   G+S+  +A  GVYFSHETCTHA  ++SCA NEV ALR+ FG ELLS+++I+NTKGFTGHPMGVSFEDVAAV+VL    +PP  N
Sbjct:  340 RLLATQYSNSAFHGAALDRKHIASELERFLSEVEIVHGVSKAEVATHGVYFSHETCTHANSSSSCAGNEVAALREAFGNELLSKMLILNTKGFTGHPMGVSFEDVAAVQVLMTQTVPPVVN 460
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: A0A1E7FF62_9STRA (Ketoacyl_synth_N domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FF62_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.080e-45
Identity = 82/121 (67.77%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLL TQ SNSAYHGA++D+ HIA EL+RFL  +E   GIS+  IA  GVYFSHETCTHA+  +SC+ NEV ALR  FG+ELLS+L+I+NTKGFTGHPMGVSFEDV AVEVL R  +PP  N
Sbjct:  388 RLLATQYSNSAYHGAALDRKHIASELKRFLSDIELIHGISKAEIATHGVYFSHETCTHASSASSCSGNEVAALRVAFGDELLSKLLILNTKGFTGHPMGVSFEDVCAVEVLLRQTVPPIPN 508
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BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Match: B8BSY1_THAPS (Ketoacyl_synth_N domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSY1_THAPS)

HSP 1 Score: 164 bits (415), Expect = 1.260e-45
Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVYFSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGVSFEDVAAVEVLHRGIIPPTAN 363
            RLL TQ SNSA+HGA++D+ HIA EL+RFL  +E   GIS+  IA  GVYFSHET THA+  ASCA NEV ALR  FG ELLS+L+I+NTKGFTGHPMGVSFEDVAAVEVL R ++PP  N
Sbjct:  399 RLLATQYSNSAFHGAALDRKHIASELQRFLNDVELIHGISKAEIATHGVYFSHETSTHASAAASCAGNEVAALRSAFGNELLSKLLILNTKGFTGHPMGVSFEDVAAVEVLLRQVVPPMPN 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10511.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXY2_ECTSI1.100e-79100.00Ketoacyl_synth_N domain-containing protein n=1 Tax... [more]
A0A6H5JDP7_9PHAE4.520e-76100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9U2_9STRA8.380e-5172.73Hydroxymethylglutaryl-coenzyme A synthase N termin... [more]
K0TIT3_THAOC1.700e-5068.60Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A4D9DA31_9STRA1.060e-4968.60Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2V7B7_9STRA5.380e-4763.64Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2XTA8_9STRA1.410e-4665.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2RGL0_9STRA7.290e-4665.29Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7FF62_9STRA1.080e-4567.77Ketoacyl_synth_N domain-containing protein n=1 Tax... [more]
B8BSY1_THAPS1.260e-4568.60Ketoacyl_synth_N domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10511contigEcto-sp13_S_contig10511:867..2740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score253.4
Seed ortholog evalue5.2e-65
Seed eggNOG ortholog2880.D7FXY2
Model size363
KEGG rclassRC00004,RC00503
KEGG koko:K01641
KEGG ReactionR01978
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG ModuleM00088,M00095
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.3-oxoacyl-[acyl-carrier-protein] synthase activity
EggNOG OGsCOG0304@1,KOG1394@2759
EC2.3.3.10
Cds size363
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.9557683-CDS-Ecto-sp13_S_contig10511:866..9561681462535.9557683-CDS-Ecto-sp13_S_contig10511:866..956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10511 867..956 -
1681462535.975978-CDS-Ecto-sp13_S_contig10511:1927..21191681462535.975978-CDS-Ecto-sp13_S_contig10511:1927..2119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10511 1928..2119 -
1681462535.9879565-CDS-Ecto-sp13_S_contig10511:2659..27401681462535.9879565-CDS-Ecto-sp13_S_contig10511:2659..2740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10511 2660..2740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10511.490.1prot_Ecto-sp13_S_contig10511.490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10511 867..2740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10511.490.1

>prot_Ecto-sp13_S_contig10511.490.1 ID=prot_Ecto-sp13_S_contig10511.490.1|Name=mRNA_Ecto-sp13_S_contig10511.490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
RLLETQISNSAYHGASMDKHHIAIELERFLVAMERNWGISRDAIAESGVY
FSHETCTHATPTASCAFNEVWALRQCFGEELLSRLVIINTKGFTGHPMGV
SFEDVAAVEVLHRGIIPPTAN
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mRNA from alignment at Ecto-sp13_S_contig10511:867..2740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10511.490.1 ID=mRNA_Ecto-sp13_S_contig10511.490.1|Name=mRNA_Ecto-sp13_S_contig10511.490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10511:867..2740- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTGCTTGAGACCCAGATCTCCAACTCGGCCTACCACGGGGCCTCGAT
GGACAAGCACCACATCGCCATCGAGCTAGAGGTGCGTCAAGCCCTCCCAG
CGTCCTCCATGTGTCCGTACTTGTCGTCGCCCTTTCTACTTCGGTTAGTT
GAACAAATCCGACCCACCCCACCTCTACCCGCTCTTTCGGATGCAGAGTA
AGGCTCTCATTTTTTTCCGTTGTTGTTTGAGTTATTTTACACCCGTGTCT
TGCTCCTGTGACGGTTGCGTGGACCTCGTGCTCCGTTTTAGTTTGTTTCA
GCGCCAGAGGGTTTGTATTGAAGTGATCTTGGGATACAGAAAGGTTCTTG
GTGACGGTGGATGCGGTGTTGCAGGCCCATAGAAAAGAGAGCTGGGGTAG
AGTCCATGCTGCACTACTGGCAGTAGGGGGGGGCAGCTGTTGGCTAAGGC
GAAATGCTTTCATGATCATGGTTCCTTGCACGTGCATTTGTCGTGACTAA
GAAACTTCGAGACCAACAAAAACCAACAACAACATGCAAACGATTTATTC
GACGAAGATACGTTTGCCATCTACCAAACAGACTACAATTGACCGCCCTT
AACAACTGCAACAACAAACAGCGTTTCCTCGTGGCCATGGAGCGGAACTG
GGGCATCAGCCGGGACGCCATTGCCGAGTCGGGGGTGTACTTCTCCCACG
AAACCTGCACACACGCAACCCCCACCGCCTCCTGCGCCTTCAACGAGGTG
TGGGCCTTGCGGCAGTGCTTCGGCGAGGAGCTTCTCTCTCGACTCGTCAT
CATCAACACCAAGGTATTGTTGGCCACGGAAGCGTGTGCGTCTGCTGTTG
TTATTTCTGTGAGTTGGGTGGTGGTGATCCCGAACTTGTCGCGACCTCGG
CGCTGTCAATGTCGATGTGTTTTCGAACGTCTTTCTTTCCCCAAAAGCAA
CCAGTAACAGCATGCCTTGCCTAAGGTTGCACACAACGTTGTACACATGC
AATGTCTTGGTACGTTATCATACCTGGCGGTGCACGCTCCCCTCTTTATT
TTTCGTAGCGCGTACCGCCATACCAGGCACCTCGTTTCAGTAGCTAGTCT
GTGACCACAGAAGGACTGCGCGCCAAGTGGACCAGTACGGCTGCTAAATG
GTACTGGGCAGAGATGCCTACGCCCTGAGCCCACGAAAGAGAATCCCTTG
TCTTTTTCGATGGCTTTGTTTGGTACGCACCAACGTGACGGGGCACGTCA
CCCCAGAGTGAACCATGCCCGGGTGCCAATGATGCCGAGCCGAGCTCCTC
CCCGCATCGATCACTGCATCTCAAAGCAACTCCCGGGCTCACAGACCTAA
AGACGTGCTCTTCACGCATGGACCCACCGTAAAGTTGTGGGGTACAGGTG
TCCCCAGCTCATGAAAATCTTGAACAAAGGTGTCCCTACAGCGGATAATT
ATCTTTGTGAATTTTTACACCCCTTATCTTTTGTTTATTCTGCGGGGTAT
CATGCTTCTCGAAACGATGCCGTCCTTGAAGCGGGACGGTGTCTATCATG
AACGACATCTACTCGAAGCTTTCGGATTTTATCCTTCACGACAGACCTTC
CACGAGGTCACAACTCGATTGCTAATCCTACTCCGTACCGGGCCCGGTGA
CCACAACGCATTTAACTCCTCCGTTCATTCCTCCGTTTTCAGCGTGCCGC
AGTCTACTGCGTCACCCAACCCTGTCATTGCGTTCACTGACTGACCAGTT
CCTTAACCTCCACCTCTCTGTTTTGGCGGTGCAGGGGTTCACTGGTCATC
CTATGGGCGTCTCCTTCGAGGACGTGGCAGCAGTCGAGGTCCTTCATCGC
GGTATCATCCCGCCGACAGCCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10511:867..2740-

>mRNA_Ecto-sp13_S_contig10511.490.1 ID=mRNA_Ecto-sp13_S_contig10511.490.1|Name=mRNA_Ecto-sp13_S_contig10511.490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10511:867..2740- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTGCTTGAGACCCAGATCTCCAACTCGGCCTACCACGGGGCCTCGAT
GGACAAGCACCACATCGCCATCGAGCTAGAGCGTTTCCTCGTGGCCATGG
AGCGGAACTGGGGCATCAGCCGGGACGCCATTGCCGAGTCGGGGGTGTAC
TTCTCCCACGAAACCTGCACACACGCAACCCCCACCGCCTCCTGCGCCTT
CAACGAGGTGTGGGCCTTGCGGCAGTGCTTCGGCGAGGAGCTTCTCTCTC
GACTCGTCATCATCAACACCAAGGGGTTCACTGGTCATCCTATGGGCGTC
TCCTTCGAGGACGTGGCAGCAGTCGAGGTCCTTCATCGCGGTATCATCCC
GCCGACAGCCAAC
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