mRNA_Ecto-sp13_S_contig1681.4878.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1681.4878.1
Unique NamemRNA_Ecto-sp13_S_contig1681.4878.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A6H5KLY6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY6_9PHAE)

HSP 1 Score: 785 bits (2026), Expect = 1.020e-280
Identity = 390/405 (96.30%), Postives = 395/405 (97.53%), Query Frame = 1 
Query:  802 MKEDLAKETGTTAVLAAVATRRKRAPCLRVSSRHFNAESKAASEASADQLPKALKGLKGERRSEYFTSTPDSCAGSASSFDWGSAFTEKAFFALKSCQHFELTGVRHMCKNRCYFRAYEPVRKWHALRLAVARLGASTGVLTGWCVQMDRGQAAEDSWRIRYVAPDGSVFPCVKPVLEALGLGHGVSGYPTSPPSLRRKRRTPTTSPQPLPAACATIRHHPNGSAYLLKKPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWMRGTQQAEEPLSAAERSVPALEVVWRDGSANTSSGKQLEF 2016
            MKEDLAKETGTTAVLAAVATRRKRAPC RVSSRHF+ ESKAAS+ASADQLPKA KGLKGERRSEYFTSTPDSCAGSASSFDWGSAFTEKAFFALKSC+HFE TGVRHMCKNRCYFRAYEPVRKWHALRLAVAR+GASTGVLTGWCVQMDRGQ AEDSWRIRYVAPDGSVFPCVKPVL+ALGLGHGVSGYPTSPPSLRRK RTPTTSPQPLPAACATIRHHPNGSAYLLK PRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNW VEWMRG QQAEEPLSAAERSVPALEVV RDGSANTSSGKQLEF
Sbjct:    1 MKEDLAKETGTTAVLAAVATRRKRAPCPRVSSRHFDTESKAASKASADQLPKAFKGLKGERRSEYFTSTPDSCAGSASSFDWGSAFTEKAFFALKSCEHFEHTGVRHMCKNRCYFRAYEPVRKWHALRLAVARVGASTGVLTGWCVQMDRGQTAEDSWRIRYVAPDGSVFPCVKPVLKALGLGHGVSGYPTSPPSLRRKSRTPTTSPQPLPAACATIRHHPNGSAYLLKNPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWWVEWMRGAQQAEEPLSAAERSVPALEVVGRDGSANTSSGKQLEF 405
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A835Z3C1_9STRA (DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.810e-38
Identity = 68/129 (52.71%), Postives = 93/129 (72.09%), Query Frame = 1 
Query: 1510 PPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEW 1896
            P SPFGL+EELL  DPW+LL+ CIMLNQT+R Q+DPVL +FL+  PT + AA A    +  ++ PLGL ++RP+A++RFS+EYL  AW + + L+WVG+Y  DA+ IF+ +KW  V PDD  L   V+W
Sbjct:    2 PLSPFGLLEELLWYDPWRLLMACIMLNQTSRRQVDPVLAQFLDTHPTPESAAKADPTALAPMLKPLGLNKKRPVAVVRFSREYL--AWRSGRALHWVGQYGVDAYDIFVLQKWETVTPDDSVLRCYVDW 128
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A7R9TQ64_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TQ64_9VIRI)

HSP 1 Score: 146 bits (368), Expect = 1.470e-35
Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1 
Query: 1438 ACATIRHHPNG-SAYLLKKPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTAD-VAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNW 1884
            +CAT+    +G S   L +      P SP+GL+EEL   +PWKLL+ C++LN TTR Q+D VL     ++PTA  +AAA    E+ R++APLGLQ RR  +++RFS+EY  K W +V EL+ VGKYAADA+ IFI  +WRE +PDDHALN+
Sbjct:  116 SCATMASRASGGSPRGLARVPGWLAPHSPYGLLEELYRREPWKLLVSCMLLNCTTRLQVDRVLPALFNRYPTARALAAAPDAAELERLLAPLGLQRRRSKSLLRFSREYTEKPWADVMELHGVGKYAADAYAIFILGRWRETRPDDHALNF 266
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: R1BD03_EMIHU (ENDO3c domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BD03_EMIHU)

HSP 1 Score: 147 bits (371), Expect = 3.200e-34
Identity = 97/303 (32.01%), Postives = 133/303 (43.89%), Query Frame = 1 
Query: 1087 SCQHFELTGVRHMCKNRCYFRAYEPVRKWHALRLAVARLGASTGVLTGWCVQM-----------DRGQAAED---------------------SWRIRYVAPDGSVFPCVKPVLEALGLGHGVSGYPTSPPSLRRKRRTPTTSPQPLPAACATIRHHPNGSAYLLKKPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWM 1899
            SC      G RH+C   C+F A+EP R+  +LR A+   GA+   L GW V+             RG  AE                      SW   +V+P G+ F  V         G  V  +    PS   +R+     P+ L A   +       +                 GL  ELL D PW LL+ CI+LNQTTR Q+DPV+ R L+ FP A   A A    +  ++ PLGL  +R  +++ FS  +++  W     L  VGKY  DAH IF E ++RE QP+D AL W   W+
Sbjct:  202 SCPLLSRCGPRHLCAYGCFFDAFEPARRLQSLRAALEARGATGACLDGWRVERVRSGAGASSSPARGDGAEGGKXXXXXXXXXXXXXXXXXXXSWH--FVSPSGATFASV---------GAAVRAFADGSPSTSGERQG---GPRGLEARSVSAESEDAAA-----------------GLRRELLWDRPWALLLACILLNQTTRRQVDPVMARLLDAFPDAPSLAEAEPGAVEPILRPLGLHRQRSRSVVAFSAAFVAGGWARADALPGVGKYGRDAHAIFCEGRYRETQPEDFALRWYRSWL 473
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A5B8MSN9_9CHLO (DNA glycosylase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSN9_9CHLO)

HSP 1 Score: 146 bits (368), Expect = 6.380e-34
Identity = 93/280 (33.21%), Postives = 140/280 (50.00%), Query Frame = 1 
Query: 1102 ELTGVRHMCKNRCYFRAYEPVRK---------WHALRLAVARLGASTGVLTGWCVQMDRGQAAEDSWRIRYVAPDGSVFPCVKPVLEALGLGHGVSGYPTSPPSLRRKRRTPTTSPQPLPAACATIRHHPNGSAYLLKKPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASV--DEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQP-DDHALNWCVEWMRG 1905
            E    RH+C++RC+FR +EP RK         WHA   A A       + +GW  +++      + +++  V+P G      K  LE++G+        TS     +K R   +        C   RH                   SP+GLIEEL  + PWKLL+ C++LNQTTR Q+D  L+ F E+FPT +   + S   +E+   ++P GLQ +R   +++F++E+L K W   +EL+ VG YA +A++IF   K     P  DHALNW VE+  G
Sbjct:  213 ETGDCRHLCEHRCFFREHEPARKLKEFRDSCEWHAGSKAEAE-----SLFSGWSSRLE--VCRSNGFKVVLVSPQGVSHNHSKKALESIGIAMDPKYKITS--LYEKKIRDRVSGNATEVVMCHGPRH-------------------SPYGLIEELFWECPWKLLVCCLLLNQTTRKQLDIALLHFFERFPTPESLLSCSERQNEIEGAISPCGLQRKRTATLLKFTKEFLEKDWVEPRELHGVGAYAQEAYEIFCLGKLNPNIPVPDHALNWYVEYKLG 464
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A516AGE4_LINPO (Methyl-CpG-binding domain protein 4 n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AGE4_LINPO)

HSP 1 Score: 150 bits (380), Expect = 7.230e-34
Identity = 102/303 (33.66%), Postives = 152/303 (50.17%), Query Frame = 1 
Query: 1084 KSCQHFELTG-VRHMCKNRCYFRAYEPVRKWHALRLAVARLGASTGVLTGWCVQMDRGQAAEDSWRIRYVAPDGSVFPCVKPVLEAL---GLGHGVSGYPTSPPSLRRKRRTPTTSPQPLPAACATIRHHPNGSAYLLKKPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKA--------WTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWMRGTQQAEEPLSAAERSVPA 1956
            K C  +  TG  RH+C++ CYFR YEP R+ HALR   AR       L GW  ++     +   W +    P G+V    K    AL    L   + G  ++PPS           P PL ++ A      +  A+          P SPFGL+EE+LT +PW+LL+ C++LN+T R  +D +L RF +++P+A+    A V E+  ++APLGL  +R   + RFS+EYL            + ++ L+ VG+YA DAH++F+      VQP D  L W VE+ + T  +  P      + PA
Sbjct:  901 KQCNVYWETGSCRHLCEHLCYFREYEPARQLHALRCR-ARSHPLRPSLQGWTARLALTHESP-FWCVVLHDPSGAVRGSAKDAWTALVNDALDAPLPGAASAPPS-----------PLPLSSSQAGASEMQHSFAH----------PRSPFGLVEEVLTGEPWQLLVACLLLNRTGRIVVDRLLGRFFQRWPSAEALVGADVAELESILAPLGLHRKRSRMLCRFSREYLEAVAELGSPLPLSRLRRLHGVGRYAYDAHELFVRGVL--VQPTDIYLGWFVEYHQQTLASRTPCLLEAETAPA 1178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A7L2CZ00_CATFU (MBD4 protein (Fragment) n=6 Tax=Passeriformes TaxID=9126 RepID=A0A7L2CZ00_CATFU)

HSP 1 Score: 137 bits (346), Expect = 8.980e-34
Identity = 71/135 (52.59%), Postives = 87/135 (64.44%), Query Frame = 1 
Query: 1495 RAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWM 1899
            R  T P SPF LI+E L  DPWKLLI  I LN+T+     PVL  FL K+PT +VA AA   EM+ ++ PLGL E R   IIRFS EYLSKAW    EL+ +GKY  D+++IF   +W+EVQP DH LN    W+
Sbjct:   38 RKWTPPRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWEFLRKYPTPEVARAADWKEMSELLKPLGLYELRAKTIIRFSGEYLSKAWRYPIELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHTWL 172
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BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A7K4VBA8_9EMBE (MBD4 protein (Fragment) n=49 Tax=Neognathae TaxID=8825 RepID=A0A7K4VBA8_9EMBE)

HSP 1 Score: 136 bits (343), Expect = 2.300e-33
Identity = 70/135 (51.85%), Postives = 88/135 (65.19%), Query Frame = 1 
Query: 1495 RAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWM 1899
            R  T P SPF LI+E L  DPWKLLI  I LN+T+     PVL  FL+K+P+ +VA AA   EM+ ++ PLGL E R   IIRFS EYLSKAW    EL+ +GKY  D+++IF   +W+EVQP DH LN    W+
Sbjct:   38 RKWTPPRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWEFLKKYPSPEVARAADWKEMSELLKPLGLYELRAKTIIRFSGEYLSKAWRYPIELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHTWL 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A7K7CUY1_PHEME (MBD4 protein (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K7CUY1_PHEME)

HSP 1 Score: 136 bits (343), Expect = 2.300e-33
Identity = 70/135 (51.85%), Postives = 88/135 (65.19%), Query Frame = 1 
Query: 1495 RAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWM 1899
            R  T P SPF LI+E L  DPWKLLI  I LN+T+     PVL  FL+K+P+ +VA AA   EM+ ++ PLGL E R   IIRFS EYLSKAW    EL+ +GKY  D+++IF   +W+EVQP DH LN    W+
Sbjct:   38 RKWTPPRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWEFLKKYPSPEVARAADWKEMSELLKPLGLYELRAKTIIRFSGEYLSKAWRYPIELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHTWL 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Match: A0A851R966_TYCCO (MBD4 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A851R966_TYCCO)

HSP 1 Score: 135 bits (341), Expect = 4.300e-33
Identity = 69/132 (52.27%), Postives = 87/132 (65.91%), Query Frame = 1 
Query: 1504 TFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWCVEWM 1899
            T P SPF LI+E L  DPWKLLI  I LN+T+     PVL  FL+K+P+ +VA AA   EM+ ++ PLGL E R   IIRFS EYLSKAW    EL+ +GKY  D+++IF   +W+EVQP DH LN    W+
Sbjct:   41 TPPRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWEFLKKYPSPEVARAADWKEMSELLKPLGLYELRAKTIIRFSGEYLSKAWRYPIELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHTWL 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1681.4878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY6_9PHAE1.020e-28096.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3C1_9STRA4.810e-3852.71DNA glycosylase (Fragment) n=1 Tax=Tribonema minus... [more]
A0A7R9TQ64_9VIRI1.470e-3550.33Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
R1BD03_EMIHU3.200e-3432.01ENDO3c domain-containing protein n=1 Tax=Emiliania... [more]
A0A5B8MSN9_9CHLO6.380e-3433.21DNA glycosylase n=1 Tax=Chloropicon primus TaxID=1... [more]
A0A516AGE4_LINPO7.230e-3433.66Methyl-CpG-binding domain protein 4 n=1 Tax=Lingul... [more]
A0A7L2CZ00_CATFU8.980e-3452.59MBD4 protein (Fragment) n=6 Tax=Passeriformes TaxI... [more]
A0A7K4VBA8_9EMBE2.300e-3351.85MBD4 protein (Fragment) n=49 Tax=Neognathae TaxID=... [more]
A0A7K7CUY1_PHEME2.300e-3351.85MBD4 protein (Fragment) n=2 Tax=Passeriformes TaxI... [more]
A0A851R966_TYCCO4.300e-3352.27MBD4 protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1681contigEcto-sp13_S_contig1681:174..4212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score771.9
Seed ortholog evalue1.4e-220
Seed eggNOG ortholog2880.D7FKJ0
Preferred nameMBD4
Model size2228
KEGG koko:K10801
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000700,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008263,GO:0008630,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0012501,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022402,GO:0023052,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044773,GO:0044774,GO:0044818,GO:0045008,GO:0045786,GO:0045930,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1990837
Exons4
EggNOG free text desc.domain protein
EggNOG OGsKOG4161@1,KOG4161@2759
Cds size1218
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1681.4878.1prot_Ecto-sp13_S_contig1681.4878.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1681 975..4003 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.6009617-UTR-Ecto-sp13_S_contig1681:173..9741681462881.6009617-UTR-Ecto-sp13_S_contig1681:173..974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1681 174..974 +
1681462881.6542084-UTR-Ecto-sp13_S_contig1681:4003..42121681462881.6542084-UTR-Ecto-sp13_S_contig1681:4003..4212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1681 4004..4212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.613736-CDS-Ecto-sp13_S_contig1681:974..14721681462881.613736-CDS-Ecto-sp13_S_contig1681:974..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 975..1472 +
1681462881.623446-CDS-Ecto-sp13_S_contig1681:1766..20751681462881.623446-CDS-Ecto-sp13_S_contig1681:1766..2075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 1767..2075 +
1681462881.6328764-CDS-Ecto-sp13_S_contig1681:2344..24861681462881.6328764-CDS-Ecto-sp13_S_contig1681:2344..2486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 2345..2486 +
1681462881.6427064-CDS-Ecto-sp13_S_contig1681:3734..40031681462881.6427064-CDS-Ecto-sp13_S_contig1681:3734..4003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 3735..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1681.4878.1

>prot_Ecto-sp13_S_contig1681.4878.1 ID=prot_Ecto-sp13_S_contig1681.4878.1|Name=mRNA_Ecto-sp13_S_contig1681.4878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=406bp
MKEDLAKETGTTAVLAAVATRRKRAPCLRVSSRHFNAESKAASEASADQL
PKALKGLKGERRSEYFTSTPDSCAGSASSFDWGSAFTEKAFFALKSCQHF
ELTGVRHMCKNRCYFRAYEPVRKWHALRLAVARLGASTGVLTGWCVQMDR
GQAAEDSWRIRYVAPDGSVFPCVKPVLEALGLGHGVSGYPTSPPSLRRKR
RTPTTSPQPLPAACATIRHHPNGSAYLLKKPRAGTFPPSPFGLIEELLTD
DPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVA
PLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWR
EVQPDDHALNWCVEWMRGTQQAEEPLSAAERSVPALEVVWRDGSANTSSG
KQLEF*
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mRNA from alignment at Ecto-sp13_S_contig1681:174..4212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1681.4878.1 ID=mRNA_Ecto-sp13_S_contig1681.4878.1|Name=mRNA_Ecto-sp13_S_contig1681.4878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4039bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1681:174..4212+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCTGCCTGTCTGCGGAGGGTCGAAGTTGGTTCTCTCGATTTTTGCAC
ATTATGCCGCTGTCAGCCTGTAGACTACAGGTACAGTACAGTCGTTGTTG
AGTTCGAATCAGACCCAGGCTCTTTCCGTAGACCTGTTCCTTTGTACACT
CATGTATCTGCGCGGACGGTGGCCGAGAGAATTCGTCGGTTTGCATTCTA
GCTTTTCCGTGGTCGCCCTAGATCTGCACTAGAAGCAGCGACGAACCGAT
TTACCCAATATACTGAGAGAGCGGGGGAGCAGCTTGAGCAACATGCACAC
GTGAAAACCTGTGCAAACGAAAGCTTGGTTAGTTTATCATTTCCTATCGA
CGGCACAACAAAACGTGTATCCAGCCGGTTTCTTCACTCACTGGAAGGCC
TCAACACGTCCCCTTCGACTGTGGTACTACCTCGAACGGGTGGTCTTTCT
GTGAGGTCACGTATCCTTTCTAAAAACGTGTTTAAGTGCAGTTATTATGT
AGTCGTTCGTTACAATTTACGGCATTCTTTTTCGTCGCTCCGTTGTCAGG
AATCAGCTATCGCTCTTGATATGCACGCGTGCACGAAGCACACAAGCGTG
ATATCGTAGCTTGCTGCCCTCCTCTTGTTGGAAAACACATCCCCCCTATT
TGTGCAAGACGCCAGGTCGGCCTCAACCCCTCCTCCCAGTTCAGTTCTCG
TCAAGCCCCTTGATCACCTCATTACATTACATACGTTGTCACTCCTGCTC
AGGCTGCTCTTGCTATCGTACGCACGACTCACACACACAGAAGAGCATGT
CATGAAGGAGGACCTTGCAAAGGAGACAGGTACCACCGCCGTCCTTGCAG
CAGTGGCTACTCGAAGAAAGAGGGCGCCCTGCCTAAGAGTGTCAAGTCGA
CATTTTAATGCTGAAAGCAAGGCTGCCTCTGAAGCAAGTGCGGACCAGCT
CCCGAAAGCGTTGAAGGGCTTGAAGGGAGAGCGAAGAAGCGAGTACTTCA
CGTCAACCCCGGATTCCTGTGCAGGCAGCGCCAGCAGCTTCGATTGGGGG
TCGGCTTTCACGGAGAAAGCCTTTTTCGCTCTGAAAAGCTGTCAACACTT
CGAACTCACAGGCGTGCGCCACATGTGCAAAAATCGGTGTTACTTCCGAG
CTTACGAGCCCGTAAGAAAGTGGCATGCTCTTCGGTTAGCCGTGGCAAGA
TTGGGGGCATCGACAGGGGTGCTGACTGGATGGTGTGTCCAAATGGACAG
AGGTCAGGCTGCAGAAGACTCGTGGCGTATCAGATACGTTGCTCCAGATG
TGGGTATCTCTGCAAATCCTAATCCTTTGTAAGGCATGGAATTTTCTCTC
AAACGCTACGTACGCATTTGCTACATGACCATGGATCGTATGCTCGTGTT
CCGCGATGCAGCCAATTTCGTGTCGAGTTCAGTGATATGTGACCTTAGAC
TCGATACGGGAGGCTCAACTAAGACTTGAGACTTAGATCCTTTGCTCTAG
CGCTTGGGTGGCTCAACGCTTCAATCTTCTTCTCTCTTCTCACCACCTGC
CGCTCATTCATATGCCGAACTCGACGTCTTCTCGGCAACACAGGGGAGCG
TATTTCCTTGCGTCAAGCCGGTGCTGGAAGCCTTGGGCTTGGGACATGGC
GTCAGCGGCTACCCGACGTCGCCTCCCTCGCTACGGCGAAAAAGGCGAAC
GCCAACAACTTCACCCCAGCCACTACCTGCGGCCTGTGCAACAATCAGGC
ACCACCCGAACGGGTCCGCTTATTTGCTGAAGAAGCCACGGGCTGGGACG
TTTCCTCCATCCCCGTTCGGATTGATCGAAGAACTCCTGACTGATGACCC
CTGGAAACTGTTGATTGGATGCATTATGCTGAACCAGACCACCAGGTCGC
AGGTACGATGTTAGACATCACTTCTCTGCTGCAGTATTGGGATTCATCAC
TTCTCTGCTGCAGTATTGGGATTGGTCAACGTGGTTATCGTTTCGCGCTG
CGTGAGTTGAGTTTATGAATTTAGTTGGGATATATGGTTTTGTACCGCAA
AATCATGTCGATTCAGGTTCAATAGGATGTCGACATGCACGCATTTTTGC
AGGTGGAATCCCAACGTGTTTGGTGGAACTGACTCCTCTTCCTGCCCTCC
GGCTCCGTCGATTTGTGCAAGATGGACCCGGTGCTAGTGCGATTTCTGGA
AAAGTTTCCAACCGCCGACGTAGCTGCGGCAGCTAGCGTGGACGAGATGA
CTCGAGTGGTGGCCCCTCTTGGGCTCCAGGAAAGAAGACCCATTGCTATC
ATCCGCTTTTCACGTGAGGCTTGGTTTTTTGCCACACAGGGCGATAACCT
GGTGTCCGTCCCGCCATGTGCTTTCTGGGATATGTTGCGTTATGTGTGTT
GTTCCTTCGTTGTGCAAGCCCTCACACATTCCCGCCGATTGACCATTTAC
GACAAGCAAATCATTTTTGAAGGGGTGGACGCCTTTCTCGCGGTAAATGT
CCTTGGACTGGTTCCACGAAGCCCGTTGTCGAGGTAAATGTCCCCCTCTC
GAACACAACCAATAGCTGCGGACTACCATCCTTTTATAGTATGCGTTGAA
TCGTCGCCCTGCCGAACATCACGTGGTTCCCCCCGGAAACCTCTTGACGA
TAGTAGCTCCTCCAATGTACCCCAATCTGCGGTCTAACACACATGCTGCT
CACCTTGTGCGGCATCGACACGAAGGTCAAAGGTTGCTTGGCTGCCAAGG
TGTTGAAACGTTCCCCACCTAGCTGCCCAAGAGATCGCCGGGGAAACGCT
TCGATACCTCGGCAGCCCAGCGACCTTACGCCTTCGTGCGGCCTTGTGCG
GCATCGACGCGAACGTTAGGTCGCTTGGTGGCCGAGGTGTTGAAGCGTTC
CCCCCGCTAGCTGCCTCAGGAATCTAATCCCTTGGGCAGCTGGGCGAACT
TTTAAACACCCCCGCAGCCAGCGGCCTTCGTCCTTCTTGTCGGCTCCAAA
CACACAGGTCGCGGGTGTTCCATAGCGTGATGGTAAGGAGTTAAGCGTAA
GCGGCAGAGAAACGGCAGCCTGTGGCGTGCGATGATTGGGTACTGTTGCT
AAGCTGATTGGCACAACGCGGAAAAAAGATGCTGAAAATGTATTCTTCAC
AAGGGACGCGTCGAAACAAAAAAATTCGGTGAAAGCCGACATCGTTTTCC
AAGTCGGTTGATTCCTTGGAGGCAACGTCCTCTACATCAAAACATGTAGG
GGCAATGGCTGGCGAAAATGACAGTACGGGGAGGTACGCGGGTCATCGCC
TCGGGGCGCATCTTCGAGGTTGAACAACCACGGTACCCCGGCGAGTGTTT
CTTCGACTACATTATCGACGATGGCACGCTAAAACAAAGCGGCTCCGCAG
CCGCGCCCACAATAATGTGCGCGCTGGTATCGATAGAGATGCGTCTTGCG
ATCTCCGTCCGTGACGTCTACAGAGGACTCATGGAGCGAGATTGCACTTT
CTATCTCCTCTTGAGCGATCCGCCTCCGACCATTTGCTGGTGTTGTGTGC
GTCCCCCTCAGAGGAGTACCTTTCCAAGGCGTGGACAAACGTCAAGGAAC
TGTACTGGGTCGGGAAGTACGCCGCAGACGCTCACAAGATATTCATCGAA
CGAAAGTGGCGCGAAGTACAACCCGACGACCACGCGCTGAACTGGTGTGT
GGAGTGGATGCGCGGCACGCAGCAAGCGGAGGAACCACTCTCAGCAGCCG
AGCGTTCTGTCCCTGCCCTTGAGGTGGTTTGGCGTGACGGAAGTGCTAAT
ACCTCCAGTGGAAAGCAACTCGAGTTCTGAGCGGCGAAATTATGTATGTT
CTAGTCGAAGTGCGTGTGTAAACATAACCTTGAATATCTTGTTCCGAAGC
TACCTGAGACACGTATTTTCATTGGCGGCGGAATGAGCTGTTGGTGGTTG
TCGACGGTGCAAAGGAACTAATAAGAATGTACCCTGAGGTGGGACCAATA
GAGAACGCACTTTTTGTGACATGTTGATGCCTTGCTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1681:174..4212+

>mRNA_Ecto-sp13_S_contig1681.4878.1 ID=mRNA_Ecto-sp13_S_contig1681.4878.1|Name=mRNA_Ecto-sp13_S_contig1681.4878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1681:174..4212+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGGACCTTGCAAAGGAGACAGGTACCACCGCCGTCCTTGCAGC
AGTGGCTACTCGAAGAAAGAGGGCGCCCTGCCTAAGAGTGTCAAGTCGAC
ATTTTAATGCTGAAAGCAAGGCTGCCTCTGAAGCAAGTGCGGACCAGCTC
CCGAAAGCGTTGAAGGGCTTGAAGGGAGAGCGAAGAAGCGAGTACTTCAC
GTCAACCCCGGATTCCTGTGCAGGCAGCGCCAGCAGCTTCGATTGGGGGT
CGGCTTTCACGGAGAAAGCCTTTTTCGCTCTGAAAAGCTGTCAACACTTC
GAACTCACAGGCGTGCGCCACATGTGCAAAAATCGGTGTTACTTCCGAGC
TTACGAGCCCGTAAGAAAGTGGCATGCTCTTCGGTTAGCCGTGGCAAGAT
TGGGGGCATCGACAGGGGTGCTGACTGGATGGTGTGTCCAAATGGACAGA
GGTCAGGCTGCAGAAGACTCGTGGCGTATCAGATACGTTGCTCCAGATGG
GAGCGTATTTCCTTGCGTCAAGCCGGTGCTGGAAGCCTTGGGCTTGGGAC
ATGGCGTCAGCGGCTACCCGACGTCGCCTCCCTCGCTACGGCGAAAAAGG
CGAACGCCAACAACTTCACCCCAGCCACTACCTGCGGCCTGTGCAACAAT
CAGGCACCACCCGAACGGGTCCGCTTATTTGCTGAAGAAGCCACGGGCTG
GGACGTTTCCTCCATCCCCGTTCGGATTGATCGAAGAACTCCTGACTGAT
GACCCCTGGAAACTGTTGATTGGATGCATTATGCTGAACCAGACCACCAG
GTCGCAGATGGACCCGGTGCTAGTGCGATTTCTGGAAAAGTTTCCAACCG
CCGACGTAGCTGCGGCAGCTAGCGTGGACGAGATGACTCGAGTGGTGGCC
CCTCTTGGGCTCCAGGAAAGAAGACCCATTGCTATCATCCGCTTTTCACA
GGAGTACCTTTCCAAGGCGTGGACAAACGTCAAGGAACTGTACTGGGTCG
GGAAGTACGCCGCAGACGCTCACAAGATATTCATCGAACGAAAGTGGCGC
GAAGTACAACCCGACGACCACGCGCTGAACTGGTGTGTGGAGTGGATGCG
CGGCACGCAGCAAGCGGAGGAACCACTCTCAGCAGCCGAGCGTTCTGTCC
CTGCCCTTGAGGTGGTTTGGCGTGACGGAAGTGCTAATACCTCCAGTGGA
AAGCAACTCGAGTTCTGA
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