mRNA_Ecto-sp13_S_contig16793.4863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16793.4863.1
Unique NamemRNA_Ecto-sp13_S_contig16793.4863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16793.4863.1 vs. uniprot
Match: A0A6H5L6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.660e-27
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = -2 
Query:    3 RGGVEGVTGQAAAPALLSCSAGPHSSAGEETCLLCGAPILSDAAAXXXXXXXXXXRAVASVDDPRARGTSSIVSTPAGVGASXXXXXXXXXXXXDGKVESRTAGEE 320
            RGGVEGV GQAAAP L++ SAGPHSSAGEETCLLCGAPILSD AA XXXXXXXXX    + DDPRARGT SIVS PAGVGASXXXXXXXXXXXXDGKV SRTAGEE
Sbjct: 1246 RGGVEGVAGQAAAPVLIASSAGPHSSAGEETCLLCGAPILSDTAAAXXXXXXXXXXXXGA-DDPRARGTISIVSIPAGVGASXXXXXXXXXXXXDGKVGSRTAGEE 1350
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BLAST of mRNA_Ecto-sp13_S_contig16793.4863.1 vs. uniprot
Match: D7FKE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 6.280e-25
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = -2 
Query:    3 RGGVEGVTGQAAAPALLSCSAGPHSSAGEETCLLCGAPILSDAAAXXXXXXXXXXRAVASVDDPRARGTSSIVSTPAGVGASXXXXXXXXXXXXDG-KVESRTAGEE 320
            RGGV+GV GQAA PAL S SAGPHSSAGEETCLLCGAPILSDAA XXXXXXXXXX    + DDPRARGTSSIVSTPAGVGAS  XXXXXXXXXX   KV SRTAGEE
Sbjct:  287 RGGVQGVAGQAATPALFSSSAGPHSSAGEETCLLCGAPILSDAAXXXXXXXXXXXXXXXA-DDPRARGTSSIVSTPAGVGASPTXXXXXXXXXXXXXKVGSRTAGEE 392
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16793.4863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Y7_9PHAE3.660e-2784.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKE5_ECTSI6.280e-2583.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16793contigEcto-sp13_S_contig16793:1305..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.5114658-CDS-Ecto-sp13_S_contig16793:1304..16281681462880.5114658-CDS-Ecto-sp13_S_contig16793:1304..1628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16793 1305..1628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16793.4863.1prot_Ecto-sp13_S_contig16793.4863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16793 1305..1628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16793.4863.1

>prot_Ecto-sp13_S_contig16793.4863.1 ID=prot_Ecto-sp13_S_contig16793.4863.1|Name=mRNA_Ecto-sp13_S_contig16793.4863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
FSSPAVLDSTLPSPPPPRPPPPPAGEAPTPAGVETIELVPRARGSSTLAT
ARAAATAAAAAAAAASLRIGAPHKRHVSSPAEEWGPAEQERRAGAAACPV
TPSTPPRK
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mRNA from alignment at Ecto-sp13_S_contig16793:1305..1629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16793.4863.1 ID=mRNA_Ecto-sp13_S_contig16793.4863.1|Name=mRNA_Ecto-sp13_S_contig16793.4863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16793:1305..1629+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTCTTCTCCAGCCGTCCTCGACTCGACCTTGCCATCGCCACCACCGCC
GCGGCCGCCTCCGCCTCCCGCAGGCGAGGCTCCAACCCCCGCGGGTGTCG
AAACGATTGAACTGGTGCCGCGTGCCCGGGGATCATCCACGCTCGCCACC
GCGCGCGCCGCCGCCACAGCAGCAGCAGCGGCGGCGGCGGCCGCATCGCT
CAGAATCGGCGCGCCGCACAAGAGGCACGTCTCCTCTCCCGCGGAGGAAT
GGGGGCCGGCAGAGCAGGAGAGAAGGGCGGGGGCGGCCGCCTGCCCAGTA
ACCCCCTCCACCCCGCCACGCAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16793:1305..1629+

>mRNA_Ecto-sp13_S_contig16793.4863.1 ID=mRNA_Ecto-sp13_S_contig16793.4863.1|Name=mRNA_Ecto-sp13_S_contig16793.4863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16793:1305..1629+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTCTTCTCCAGCCGTCCTCGACTCGACCTTGCCATCGCCACCACCGCC
GCGGCCGCCTCCGCCTCCCGCAGGCGAGGCTCCAACCCCCGCGGGTGTCG
AAACGATTGAACTGGTGCCGCGTGCCCGGGGATCATCCACGCTCGCCACC
GCGCGCGCCGCCGCCACAGCAGCAGCAGCGGCGGCGGCGGCCGCATCGCT
CAGAATCGGCGCGCCGCACAAGAGGCACGTCTCCTCTCCCGCGGAGGAAT
GGGGGCCGGCAGAGCAGGAGAGAAGGGCGGGGGCGGCCGCCTGCCCAGTA
ACCCCCTCCACCCCGCCACGCAAG
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