mRNA_Ecto-sp13_S_contig1679.4860.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1679.4860.1
Unique NamemRNA_Ecto-sp13_S_contig1679.4860.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1679.4860.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.150e-33
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 KGSCRGNRKSARDPAPFSVDDGVIRLQGSRSDGAAAAVTESPGGMKLEDLLAIAGDDPSGARLVDTKWRTC 213
            KGSCRG R SARDPAPFSVDDGV+RLQG+R DGAAAAV ESPGGM+ EDLLAIAG+DPSGARLVDTKWRTC
Sbjct:  646 KGSCRGKRTSARDPAPFSVDDGVVRLQGTRLDGAAAAVAESPGGMRFEDLLAIAGNDPSGARLVDTKWRTC 716
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1679.4860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU66_9PHAE3.150e-3387.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1679contigEcto-sp13_S_contig1679:1988..4499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size435
Hectar predicted targeting categoryother localisation
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.3279324-CDS-Ecto-sp13_S_contig1679:1987..22021681462880.3279324-CDS-Ecto-sp13_S_contig1679:1987..2202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 1988..2202 +
1681462880.3415422-CDS-Ecto-sp13_S_contig1679:3185..33331681462880.3415422-CDS-Ecto-sp13_S_contig1679:3185..3333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 3186..3333 +
1681462880.3563638-CDS-Ecto-sp13_S_contig1679:4428..44971681462880.3563638-CDS-Ecto-sp13_S_contig1679:4428..4497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 4429..4497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1679.4860.1prot_Ecto-sp13_S_contig1679.4860.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1679 1988..4497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1679.4860.1

>prot_Ecto-sp13_S_contig1679.4860.1 ID=prot_Ecto-sp13_S_contig1679.4860.1|Name=mRNA_Ecto-sp13_S_contig1679.4860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
KGSCRGNRKSARDPAPFSVDDGVIRLQGSRSDGAAAAVTESPGGMKLEDL
LAIAGDDPSGARLVDTKWRTCCDIPMVGPGGAGLAIIVAQPLSFETARRL
RLQAEQERTRGSATCQAVVGVAKERHPDAHFLRDIPPETLDALI
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mRNA from alignment at Ecto-sp13_S_contig1679:1988..4499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1679.4860.1 ID=mRNA_Ecto-sp13_S_contig1679.4860.1|Name=mRNA_Ecto-sp13_S_contig1679.4860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1679:1988..4499+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGGAAGCTGCAGAGGGAATCGTAAGAGCGCGAGAGATCCAGCCCCGTT
TTCTGTCGATGACGGAGTGATACGGTTGCAGGGATCGCGTTCGGATGGGG
CAGCGGCGGCGGTGACTGAGAGTCCTGGGGGGATGAAGCTTGAGGATCTG
TTAGCGATCGCTGGAGATGACCCATCAGGCGCCCGGCTGGTCGACACCAA
GTGGAGGACGTGCTGGTAGGGAAATATTCTGGTTTTTTCTTTCCCTTTTT
TTTTATGTTACAGTGGCGGCTACGGTTTATGAGAGGGTCGGGACAAGCCA
GCAAATCTCTCTTAAATCCGGTTTTCTCGTAAACCGTACTGTGAAATGTA
TGTACTTCTCATGGTCGTGACACACCAGTTTGACCCTTAAATCGGTACTA
TCTCTTAAATATTCTCTTTAAACCGTACCCGCCAATATACCGTTGTTTTC
CCCCGTCAAAATAGCGAGAAACGGTGGTGATTTGACCTACACACCTTTGT
TTTGTGGGAACTAAAGATACATGTTCCACGACATAGACCACCCGCGTGAT
CATTGTTGCCGCGGCTGGTCCGTGGGAACACCTATGGAAAGATGACAACT
GGCGGTCCAGAAAAAATGGGACGAAGAGCAACAACACTCCAGTTGAGGTG
CCCGTGCCGTAGGCAAAAGATGGGGACGTATCCCTTGGGGGGTGGGTGGT
TGTATGCTATGTCTCTACAGTTTGTCCCTTCTACAGCTTCCGCAAGACAC
TAGGGCCTTGTTTGTTGTTGCTCGAAGGAGAAGATAGCTAGTCTCTTGCC
GGTACGGCCGGTGTAGCGAGGATGCCCCGACAGGAAGGAAGGAGAACACG
GCCGCCTCCGGCCTCTGAAGAGAAACGAAGGAACTTGGGTGTGACTTCCT
CTTCCTTCCTCGTTGATGTGGACATTTTCTGTTGCTGCAGCCACCTTCTT
CCCTCCCACCACAAGCATTGTTTATCTACCACCCAACCCTTGTTCGGCAT
ACTGCTGTTTAATTGTCCACCTGCCGCCGACTGGCCATCGGTGATTTTTC
CGATGGATCATCGGTGATCGGTCCTGTGGGAGAAATGCTTCGTCCTCTCG
AGGACACGTGGTCAATTGTCTCATTACGTACGGTATGCGTTTACATTAGT
ACATGCCCCCCGCCCCCTCGTCCTCTTTGTATCAACGACTATCGACAGCG
ACATTCCTATGGTGGGGCCCGGTGGTGCCGGACTGGCAATTATTGTCGCG
CAGCCGCTGTCCTTCGAGACGGCGCGGCGGCTGCGGTTGCAGGCGGAGCA
GGAACGGACGCGAGGTTCGGCAACGTGTCAGGCCGTGGTTGGGGTGGTGA
GTTTTCGCCGCCCTCTGCTATTTCTGCCGTGCAAATGAATAGGAGTACAG
CAGTCGTGTCCCCGGTAAAAAGAGGGTACCTCGTAGGATGGGGCTCGGAT
ACATGAGGGTGGAAATCGGTTAGCACGGACTTTGACCTGCCAAAAAATAT
ATATTGGGTACCCTAATGTTTCGGTAGAAGAGGGGGCTCCGGTAAAAGAG
GGTCGAGGGCCTTGTTGGGTGCCCTCTTTTTTCGGTACAAGAGGGGGCTC
CGGTAAAAGAGGGTCGAGGGCCTTGTTGGGTGCCCTCTTATTTCGGTACA
AGAGGGGGCTCTGGTAGAAGAGGGTCGAGGGCCTCCGTCACACCACCCTC
TGGTACGTATCGGAGCCACGACTGCAACTCTGAAGTAGAGGTCTCGAGGT
GTGTGTATGGTTGGTTGGGGGGGTTCAAGGGGGGGTATGGTGGAGCAGTC
ATGGCCCGTTGTCCGTGGTGTGTGCTGCGCCTCGTTGGATGTTGAGCCAG
CGGAAGCAGCAGCATCCATGTGTGTGTTTGCCATTGAATCTGAGTTGTCA
TGAGAGAGGACGCGCGTATTGCATGCACCAGCCGCGGAAGCGCGGTGACG
TATTGGACGAGTCGCATGAAAGGGGGAGCTTTTGTCCCACTTCGAAGCGC
GCGTGACGGCGAGAGAGAAGGACAGGCGGGGGGGATCGGCTTGATTTACT
TCAGGGCATGGATGCCCTTCGATGAAAGAGTGTTTTTGTTGATGGTGATG
ACGCACACGAGCAGCAGCCTTGAGAATTAGTTTAGAAGTGTCCCATTTTT
CCTCTCTGCGTTTTGTCGAGCTTTATGTCGGAGCAGATGCTTACCTAACG
AGTCCGCTCTTGCATGGCACGTGGTGTGTCCTCACCTAGGCCCCGTTCAG
CCAATGGCAAGATATGCTGCCGAACCAAATCCTCGCATGTTTTTTTTTTT
GTTGTTCCTGCCCAGTCCTCTCCTTCTCTTTTACGATGTTACTTAGTTAC
CAAATAGACCCCACGATTTCATGACATCATACACTCTACATAACCTCCCC
CCCGCCCCATCGTCCGCGTGTGTGCGGACTCTTAATTGCAGGCGAAAGAG
CGACATCCGGACGCCCACTTCCTGCGAGACATTCCTCCAGAAACGCTGGA
CGCGCTCATCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1679:1988..4499+

>mRNA_Ecto-sp13_S_contig1679.4860.1 ID=mRNA_Ecto-sp13_S_contig1679.4860.1|Name=mRNA_Ecto-sp13_S_contig1679.4860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1679:1988..4499+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGGAAGCTGCAGAGGGAATCGTAAGAGCGCGAGAGATCCAGCCCCGTT
TTCTGTCGATGACGGAGTGATACGGTTGCAGGGATCGCGTTCGGATGGGG
CAGCGGCGGCGGTGACTGAGAGTCCTGGGGGGATGAAGCTTGAGGATCTG
TTAGCGATCGCTGGAGATGACCCATCAGGCGCCCGGCTGGTCGACACCAA
GTGGAGGACGTGCTGCGACATTCCTATGGTGGGGCCCGGTGGTGCCGGAC
TGGCAATTATTGTCGCGCAGCCGCTGTCCTTCGAGACGGCGCGGCGGCTG
CGGTTGCAGGCGGAGCAGGAACGGACGCGAGGTTCGGCAACGTGTCAGGC
CGTGGTTGGGGTGGCGAAAGAGCGACATCCGGACGCCCACTTCCTGCGAG
ACATTCCTCCAGAAACGCTGGACGCGCTCATC
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