prot_Ecto-sp13_S_contig1679.4859.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1679.4859.1
Unique Nameprot_Ecto-sp13_S_contig1679.4859.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length247
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1679.4859.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 1.710e-116
Identity = 197/247 (79.76%), Postives = 201/247 (81.38%), Query Frame = 0 
Query:    1 MSLNDVRLPPPSLSRRGGSDKEDRGAVSLHGRRGGRGDAAEGQGPAFARALXXXXXXXXXXXXXXXXXMEAERLRTSRVYCEACPDDGVTEFLADGEMRGGGPSWKGLVTAVAAEYVHELPEGAVVGMEAVVVSDVPGNTGRRHSAPTDEALATGGGDVKEKAVAAADDGGDGSCGTGGGYGWGGAARCALAMASATFLEEVMGMGGFPRMKAMRCFSASLRCGRPPDAAGDGLAPGIFSARSSSSS 247
            MSLNDVRLPPPSLSRRGGSDKE+RGAVSLHGR G      E + PAFARAL                 MEAERLRTSRVYCEACPDDGVTEFLADGEMRGGGPSWKGLVTAV AEYVHELPEGA+VGMEAVVVSDVPGNTGRRHSAPTDEALAT GGD KEKAVAA DDGGD           GGAARCALAMASATFLEEVMGMGGFPRMKAMRCFSASLRCGRP DAAGD LAP I  ARS+SSS
Sbjct:  395 MSLNDVRLPPPSLSRRGGSDKEERGAVSLHGRGGXXXXXXEEKDPAFARALAEVAQAEAEIEAAEVAAMEAERLRTSRVYCEACPDDGVTEFLADGEMRGGGPSWKGLVTAVVAEYVHELPEGALVGMEAVVVSDVPGNTGRRHSAPTDEALATSGGDEKEKAVAAVDDGGDXXXXXXXXXXXGGAARCALAMASATFLEEVMGMGGFPRMKAMRCFSASLRCGRPRDAAGDYLAPSIVCARSNSSS 641
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1679.4859.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU66_9PHAE1.710e-11679.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 47..74
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 61..146
e-value: 2.5E-5
score: 25.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1679contigEcto-sp13_S_contig1679:312..1969 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1679.4859.1mRNA_Ecto-sp13_S_contig1679.4859.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1679 312..1969 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1679.4859.1 ID=prot_Ecto-sp13_S_contig1679.4859.1|Name=mRNA_Ecto-sp13_S_contig1679.4859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MSLNDVRLPPPSLSRRGGSDKEDRGAVSLHGRRGGRGDAAEGQGPAFARA
LAEAAQAEAEIEAAAVAVMEAERLRTSRVYCEACPDDGVTEFLADGEMRG
GGPSWKGLVTAVAAEYVHELPEGAVVGMEAVVVSDVPGNTGRRHSAPTDE
ALATGGGDVKEKAVAAADDGGDGSCGTGGGYGWGGAARCALAMASATFLE
EVMGMGGFPRMKAMRCFSASLRCGRPPDAAGDGLAPGIFSARSSSSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014721Ribosomal_S5_D2-typ_fold_subgr