mRNA_Ecto-sp13_S_contig16780.4855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16780.4855.1
Unique NamemRNA_Ecto-sp13_S_contig16780.4855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16780.4855.1 vs. uniprot
Match: D7FTT2_ECTSI (Ubiquinol cytochrome c reductase subunit QCR9 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTT2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.630e-25
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:  267 SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE 410
            SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE
Sbjct:   61 SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE 108
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BLAST of mRNA_Ecto-sp13_S_contig16780.4855.1 vs. uniprot
Match: A0A836C8S1_9STRA (Ubiquinol-cytochrome C reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.540e-10
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 3 
Query:  267 SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE 410
            SN  Y+TYI+   VVLE +YGK  D++++S+NKGKQ+ D+DWSKF  +
Sbjct:   53 SNATYVTYIVVGVVVLEAIYGKAIDTLWDSVNKGKQFKDVDWSKFKSD 100
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BLAST of mRNA_Ecto-sp13_S_contig16780.4855.1 vs. uniprot
Match: A0A024TQV2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQV2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.090e-6
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:  267 SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE 410
            SN  Y++ ++  +VV E VYGKV +SI++S+N G+ Y  IDWS+F  +
Sbjct:   41 SNVTYVSAVVAGAVVFEVVYGKVTNSIWDSLNYGRLYHHIDWSQFKSD 88
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BLAST of mRNA_Ecto-sp13_S_contig16780.4855.1 vs. uniprot
Match: A0A7S1YXE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXE8_TRICV)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:  267 SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE 410
            SN MYIT+I+   +  E + G   D+++NS+NKG+ YD +DW+KF  +
Sbjct:   51 SNVMYITWIVFGVLAAETITGSGTDALWNSVNKGRTYDSVDWTKFKTD 98
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BLAST of mRNA_Ecto-sp13_S_contig16780.4855.1 vs. uniprot
Match: A0A7R9VYC2_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VYC2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.110e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:  267 SNPMYITYIIGASVVLEFVYGKVGDSIFNSINKGKQYDDIDWSKFAEE 410
            SN MYI++ +   ++ E + G   D+++NS+NKG+ Y+ +DWSKFA E
Sbjct:   72 SNVMYISWCVAGILIAEAITGAGTDALWNSVNKGRTYESVDWSKFAVE 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16780.4855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FTT2_ECTSI7.630e-25100.00Ubiquinol cytochrome c reductase subunit QCR9 n=2 ... [more]
A0A836C8S1_9STRA3.540e-1054.17Ubiquinol-cytochrome C reductase n=1 Tax=Tribonema... [more]
A0A024TQV2_9STRA5.090e-645.83Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S1YXE8_TRICV1.040e-543.75Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9VYC2_9STRA1.110e-543.75Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16780contigEcto-sp13_S_contig16780:208..3542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size488
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit QCR9
Ec32 orthologEc-25_001440.1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.0182939-CDS-Ecto-sp13_S_contig16780:209..3271681462880.0182939-CDS-Ecto-sp13_S_contig16780:209..327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16780 210..327 -
1681462880.0266979-CDS-Ecto-sp13_S_contig16780:1036..11361681462880.0266979-CDS-Ecto-sp13_S_contig16780:1036..1136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16780 1037..1136 -
1681462880.0348437-CDS-Ecto-sp13_S_contig16780:1536..17431681462880.0348437-CDS-Ecto-sp13_S_contig16780:1536..1743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16780 1537..1743 -
1681462880.0429323-CDS-Ecto-sp13_S_contig16780:3481..35421681462880.0429323-CDS-Ecto-sp13_S_contig16780:3481..3542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16780 3482..3542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16780.4855.1prot_Ecto-sp13_S_contig16780.4855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16780 210..3542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16780.4855.1

>prot_Ecto-sp13_S_contig16780.4855.1 ID=prot_Ecto-sp13_S_contig16780.4855.1|Name=mRNA_Ecto-sp13_S_contig16780.4855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
VLPQTSAHAQAIGTTDRRKQGARGTYNGVVSKHELGHGGVPASSRNGGGP
PARTGGGGGGDTRERHDGGGHQGYGFPPGPHGGVQHRVEATRCTSRTSSE
PRWCSSSSMGRSETAFLTPSTRGNNTTTSTGPSSQRRRRRRRRRKTTSRS
VVVSSVSVTTHR
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mRNA from alignment at Ecto-sp13_S_contig16780:208..3542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16780.4855.1 ID=mRNA_Ecto-sp13_S_contig16780.4855.1|Name=mRNA_Ecto-sp13_S_contig16780.4855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3335bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16780:208..3542- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCCCGCAAACGTCGGCACACGCACAGGCTATCGGAACTACAGACCG
GCGGAAGCAAGGTGAGTGGGTAAGTTGATCCCTGATGTACGGAGCTATAC
CCGGGAATGGCGTGGTGTGGTGCTGAGAGCGAATTGCATGGCCTCGTTTG
AGACCCTTTGCGGGTTCGTCAGCGGTTTCTTCGTGGCTCAACTATGCTCT
AGCCCAAGTACTTTGCAATGCGCAGAGAGCTTGGGCGCGACCTCTCCTTC
TGCCGAAGGCGAAGGGGCGATGTTGACGCCCGTGCAAGAAAAGGAAGGAG
CAGGTGGTTGGGAGTGTTGATGTGCAGTGTCGAAACCGTCCAGATTTGCT
CACACATGTATCGGATGTATCACCTCCGTCGTATGCATACTACATCGCAG
TTATACCATGTGTACAACCTCCAGGACGTGTGTTCGTAGGCCGCTCTTGC
ACAGCTACCAATCAATACCTACATACGGAGACAACCACACCCAATGAAAG
AAAGGAAGGCCCGGCTCTGAGGTACAATCAAAGAGAGATGTTGTTCACAC
GTCCTCGGAAATCAGTCATAGTTTCCTTACCGCCCACAACATCATCCAAC
AAAAAAACACGAGCCTCCCCGCACGTAGACTACAACCGTCCTGCAGGGAG
GAGCGGCGCAATACAGCAGTATTAATTTTGCACTGCTGTAGGTGGTATAC
CCGAAGGACTTGATCGTTTGATTGTCTTCATGTAGTTTTTACCGTTGGTT
CTGGAGAAAGCACGCACACGATTTTTAGTGAGTGTTGGCGGGGAATCGTT
TTTTTTTGTAATGTTGGCGTCCGCAGAGGACGAAAACTGCTGGGCGTCGC
AATCTCGCTCGACTTCACCTCTGCTGTATAGAACCTGTCGTCCTACACTG
CAGCATTTTTATTTCCCGGATCCCGGAGCATGTTCTCAACGGCTGCAACC
ACACCTCACTAAGGCAGGTATGTCTACATATTGACCTGGCCATTTGCGTG
GGGCAAGTACGGACAGAAGAAGGTACTGAGTGGAGACCGGAACGGTTTTA
AATGTGAAGACAACAACAAAAATAACAACAACGACAACGTAGGCGGCTAC
TCGCCATCGCTTGTTCTGCCCAGACAAATAACACTGCAAACCTCAGCCGG
TTCGTGTAGGCAACGGCGAGCTCCTCCCCCGTATGGTCGCGTCGGAGGCA
GCGAGTCTGATGCCAGACGCAGTGGTCATTTAGTCGGAGTAGTGGCGGCC
AGCAGCAGCGGGACGTCCTCATCACCCGAGCCGGCCACCGACGCTCTGCG
GAACGGGTAGGTGCGAATGTTATTCGTCTACCATCTTCCTTTCGTGACGC
TGATTTCACGATTCTCTGCTGGAAGCCATGCTGTCAGCGTTCGTCGCAAC
GATCACCAACAGCATGACATTCAGCAAGGAATGGTCAAAAAGCGTCACGA
CAAGAATGATGGCAGGGCCGTTCGCACCTACGCGTTCTCTAGAACGCTGG
TGACCGCTGCGGGTGATGAGGACCTTCCCACTGCTGCCGCTGGAGGTGCC
GCGGCCACCTCAGCAACGGCGGCCACCTCAGCAGCTGCCACCACTCCAAT
TTCACTAGATGTCCAGCATCAGACTCGCGTGTCTTTGCCTGGACGTGGAA
GATGAGCTTGTCGTTGCCTAAGGCACTACTGTGTACCGTGATACTCCCTC
CTGACCAAACACGTACTCACGTACCGTTAGCACTCCCTCCTGGCCAACGA
TTTATTTCTTTCACTGCGAAATATTTTCTCTGTGCGAAAAACGACGCAGG
CGCGCGCGGGACGTATAACGGAGTTGTCAGCAAGCATGAGCTCGGTCATG
GCGGCGTCCCGGCGAGCAGCCGTAACGGCGGCGGGCCTCCGGCGCGCACC
GGCGGCGGCGGCGGCGGCGACACGAGGGAGCGTCATGACGGCGGGGGCCA
CCAGGGGTATGGCTTCCCACCCGGCCCTCACGGCGGCGTACAACACCGTG
TGGAAGGTCAGTTAGGAGTATTTGTCATCGGGTGCTGAGGGGGTGACGCG
GTTTGCTGCTTCGTGCCTGGGGGGGTCGGGCAGCGACGAGCAGGGGCAGA
TGACCTTATACCCAGCCCGTGCTTATGGATGTTTATGAAAGAACACCTGT
GTGAGGAGATTAATATGTATTGGTACAAATATCGTGACCCTGGTTTTGAT
TCCGTGGAAACGTGTTACAAGTGCTGCGTGGCTTTGTTCCGTATGGCTGC
CACACAGGATTGTGACTCTGTCTCCTTCCCTCCCCCCGTTTGTTGCTGTC
TCTTTTCTGTCTGCCTATCGCTCTCTCTCTCTTTCGACCCCCCTTGTCTC
TGGTGTGCGTGCTCCTGGTGATGTGGGCGGCGGGGCGCGTCACAAACATG
ACAGAGCAACCCGATGTACATCACGTACATCATCGGAGCCTCGGTGGTGC
TCGAGTTCGTCTATGGGAAGGTCGGAGACAGCATTTTTAACTCCATCAAC
AAGGGGGTGAGTGAGAGCTTCTGCTGCACAGATAGGCGAAACGCAACAAG
AAAACTTGCCCCCTTCTTAACGAGCGCTCGTATCCCCCCCCCCCCACTCC
CCAGAGCAGTTTGAATCAATCCCTCCTGTGCCACAAGTTGGCATTGTGCC
GAGTACTGACTGACATGGTTTGATCTTTCCGAGAGCTTTCTGCAGCCTTT
TCGTGCAACTTTTTTACCTTCGCCGTGGTGTGAGTTGGCCCAGTTTTTTT
GTTTGTTGTTGTTGTCTTCCAGCAGAGGTAATTAGAGAAAGTATGAGCAT
TGCGCTTCTCCGATCATCCCTAGTAGACCGGGAACCGTCGCGGTCCCAGT
GCGGGGGAGGTGTCTCTTCGCGATGTAACCGTCCCGTCAGTTACCCCGCC
CGATCTGACGGTGCACCCTGCGTGAAGTTTCAGTTCTCGTTGGCCCCAAG
CCGGTGGATCCGCTGTACGTGAGTGTTTCGCCTTCTCTCCTGCGAAATAT
TTGCTCCTTCCCCCCGCCGCCCCTCCCAACCCTCTCCAGCACACGCACCC
ACCTCCACGATCAATTGGCTATCGGTGATCGGTATTGCGGGAACAATGCT
CCGTTCTCTCGAGGACGCGTGGTCAATGGTCTTCACAGCGATAGATGAGT
ACGCCCCCCCTCGCCTTGTTTTTTTTTCCCCACTCCGCACGCTGCTTTTT
TTTTCGCGTTTGCAGAAACAATACGACGACATCGACTGGTCCAAGTTCGC
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGACGAGTAGATCAGTT
GTTGTTTCATCTGTTTCTGTGACCACACACCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16780:208..3542-

>mRNA_Ecto-sp13_S_contig16780.4855.1 ID=mRNA_Ecto-sp13_S_contig16780.4855.1|Name=mRNA_Ecto-sp13_S_contig16780.4855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16780:208..3542- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCCCGCAAACGTCGGCACACGCACAGGCTATCGGAACTACAGACCG
GCGGAAGCAAGGCGCGCGCGGGACGTATAACGGAGTTGTCAGCAAGCATG
AGCTCGGTCATGGCGGCGTCCCGGCGAGCAGCCGTAACGGCGGCGGGCCT
CCGGCGCGCACCGGCGGCGGCGGCGGCGGCGACACGAGGGAGCGTCATGA
CGGCGGGGGCCACCAGGGGTATGGCTTCCCACCCGGCCCTCACGGCGGCG
TACAACACCGTGTGGAAGCAACCCGATGTACATCACGTACATCATCGGAG
CCTCGGTGGTGCTCGAGTTCGTCTATGGGAAGGTCGGAGACAGCATTTTT
AACTCCATCAACAAGGGGAAACAATACGACGACATCGACTGGTCCAAGTT
CGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGACGAGTAGATCA
GTTGTTGTTTCATCTGTTTCTGTGACCACACACCGT
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