mRNA_Ecto-sp13_S_contig16773.4849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16773.4849.1
Unique NamemRNA_Ecto-sp13_S_contig16773.4849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16773.4849.1 vs. uniprot
Match: A0A6H5JIP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP8_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 3.300e-6
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 3 
Query:   99 LSKCDNCSGFGHRKDKCPSMGEKEK 173
            LSK DNCSGFGH++DKCPS+G KEK
Sbjct:   27 LSKWDNCSGFGHKRDKCPSVGGKEK 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16773.4849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIP8_9PHAE3.300e-680.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16773contigEcto-sp13_S_contig16773:2157..2484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size230
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.566487-CDS-Ecto-sp13_S_contig16773:2156..23131681462879.566487-CDS-Ecto-sp13_S_contig16773:2156..2313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16773 2157..2313 -
1681462879.5765944-CDS-Ecto-sp13_S_contig16773:2413..24841681462879.5765944-CDS-Ecto-sp13_S_contig16773:2413..2484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16773 2414..2484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16773.4849.1prot_Ecto-sp13_S_contig16773.4849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16773 2157..2484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16773.4849.1

>prot_Ecto-sp13_S_contig16773.4849.1 ID=prot_Ecto-sp13_S_contig16773.4849.1|Name=mRNA_Ecto-sp13_S_contig16773.4849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
EHLLKAKRGHRRVPVAWRELYPLRLHHRSEELLCRSATIAPGSVTGRTSA
HQWGRRRRKRFWQWSSHPRAATSTR*
back to top

mRNA from alignment at Ecto-sp13_S_contig16773:2157..2484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16773.4849.1 ID=mRNA_Ecto-sp13_S_contig16773.4849.1|Name=mRNA_Ecto-sp13_S_contig16773.4849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16773:2157..2484- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACACCTACTGAAGGCCAAGAGGGGTCATAGGAGGGTCCCAGTAGCCTG
GAGGGAATTATATCCCTTGAGGTGAGCGTGGTTTCAGTGTTGGGGGCGGC
GACGATTTGGTGAGGATGCTGTATACAGCAATGTGAAGCAATTGCCTCGC
ATCCTGCCGCCCCCGTTCAAGACTGCACCACCGGTCGGAAGAACTACTTT
GTCGAAGTGCGACAATTGCTCCGGGTTCGGTCACAGGAAGGACAAGTGCC
CATCAATGGGGGAGAAGGAGAAGGAAGCGGTTTTGGCAGTGGTCGAGTCA
CCCGAGAGCAGCGACGTCGACTCGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16773:2157..2484-

>mRNA_Ecto-sp13_S_contig16773.4849.1 ID=mRNA_Ecto-sp13_S_contig16773.4849.1|Name=mRNA_Ecto-sp13_S_contig16773.4849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16773:2157..2484- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACACCTACTGAAGGCCAAGAGGGGTCATAGGAGGGTCCCAGTAGCCTG
GAGGGAATTATATCCCTTGAGACTGCACCACCGGTCGGAAGAACTACTTT
GTCGAAGTGCGACAATTGCTCCGGGTTCGGTCACAGGAAGGACAAGTGCC
CATCAATGGGGGAGAAGGAGAAGGAAGCGGTTTTGGCAGTGGTCGAGTCA
CCCGAGAGCAGCGACGTCGACTCGGTAA
back to top