mRNA_Ecto-sp13_S_contig1677.4844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1677.4844.1
Unique NamemRNA_Ecto-sp13_S_contig1677.4844.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 4.140e-50
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 1 
Query:    1 VLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLG 330
            VLA MDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGF A SKSLA TY +RYFNQ+RSYVSLANR VS+ +GM+ P+ DLGMIPKFS IGDPSGF+SSPPSAHYLG
Sbjct:  117 VLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMW-PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLG 225
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.470e-41
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 VLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGM--YGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLG 330
            VLA+MDD+VSKEFPFVLT+KAAIS+S++DRLADDLLEG GF A SKSL   Y++ YF   RSYVSLANRRVSQ +G+   GP +D+G IPKF  + D  GFNS  PSAHYLG
Sbjct:  143 VLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVSLANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLG 254
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.580e-26
Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    1 VLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYL 327
            VLA+MDD+VS++FPFVLTKKAAI+++                 VSKSLA+ Y+SRYF+Q+RSYVSLA + +S+ RG+YG  S+   +PKF+  GDPSG+NSS PSAH+L
Sbjct:  267 VLARMDDFVSEQFPFVLTKKAAINRTN--------------HTVSKSLAQAYNSRYFSQMRSYVSLAKKGISKYRGLYGQQSNPD-VPKFAGTGDPSGYNSSSPSAHHL 360
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5JE51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE51_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.650e-17
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 VLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQ-VRSYV 192
            VL +M+D+VSKEFPFVLT+K A S+S+VDRLADDLLEG GF   SKSL  +Y++ Y    VR+Y+
Sbjct:   78 VLGRMNDFVSKEFPFVLTRKGATSRSLVDRLADDLLEGKGFAVTSKSLLNSYTATYLKLIVRTYL 142
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.350e-15
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 LAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYL 327
            L ++ DYVSKEFPF+LT ++ I   +VDRLADDL+ G GF A +K + + +++++      YVSLA+ R S    ++G       +P KF    D   +  + PS HYL
Sbjct:   51 LDRLPDYVSKEFPFILTHRSGIDIRLVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFG----AAPVPVKFGSFDDTEKYCGAVPSDHYL 155
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.970e-14
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    4 LAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYL 327
            L ++ +Y+SKEFPF+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL N R +   G++   ++L   P +F    D + +  + PS HYL
Sbjct:   62 LRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIFRS-ANLAKTPERFGSFDDSTKYGGAVPSEHYL 168
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.090e-14
Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 LAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYL 327
            L ++ +Y+SKEFPF+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL + R +   G++   ++L  IP +F    D + +  + PS HYL
Sbjct:  183 LRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRTSS-GIFRS-ANLAKIPERFGSFDDSTKYGGAVPSEHYL 289
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.050e-13
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    4 LAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYL 327
            L ++ +Y+SKEFPF+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL N R +   G++   ++L   P +F    D + +  + PS HYL
Sbjct:  183 LRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIFRS-ANLAKTPERFGSFDDSTKYGGAVPSEHYL 289
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.240e-13
Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 LAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYL 327
            L ++ +Y+SKEFPF+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL + R +   G++   ++L  IP +F    D + +  + PS HYL
Sbjct:   43 LRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVSTRRTSS-GIFRS-ANLAKIPERFGSFDDSTKYGGAVPSEHYL 149
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BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Match: A0A6H5K4A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.100e-12
Identity = 38/109 (34.86%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    4 LAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYL 327
            L ++ +Y+SKEFPF+LT+++ I   +V RLADDL+ G GF A +K++ + +++++      Y SL N R +   G++   ++L   P +F    D + +  + PS HYL
Sbjct:   43 LRRLPEYISKEFPFLLTERSGIEICMVGRLADDLVRGKGFSAAAKNILQAHTTKFMVDQLKYTSLVNTRRTSS-GIFRS-ANLAKTPERFGSFDDSTKYGGAVPSEHYL 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1677.4844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FIV2_ECTSI4.140e-5084.553'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KSM2_9PHAE2.470e-4167.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D4_9PHAE2.580e-2655.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE51_9PHAE6.650e-1761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE68_9PHAE9.350e-1539.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT01_9PHAE4.970e-1436.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE8.090e-1436.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE1.050e-1336.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTU1_9PHAE1.240e-1336.703'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4A9_9PHAE2.100e-1234.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1677contigEcto-sp13_S_contig1677:2357..2686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score177.2
Seed ortholog evalue4.1e-42
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
Model size331
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons1
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
Cds size318
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.32257-UTR-Ecto-sp13_S_contig1677:2356..23681681462879.32257-UTR-Ecto-sp13_S_contig1677:2356..2368Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1677 2357..2368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.3408456-CDS-Ecto-sp13_S_contig1677:2368..26861681462879.3408456-CDS-Ecto-sp13_S_contig1677:2368..2686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1677 2369..2686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1677.4844.1prot_Ecto-sp13_S_contig1677.4844.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1677 2369..2686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1677.4844.1

>prot_Ecto-sp13_S_contig1677.4844.1 ID=prot_Ecto-sp13_S_contig1677.4844.1|Name=mRNA_Ecto-sp13_S_contig1677.4844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSS
RYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPP
SAHYLG
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mRNA from alignment at Ecto-sp13_S_contig1677:2357..2686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1677.4844.1 ID=mRNA_Ecto-sp13_S_contig1677.4844.1|Name=mRNA_Ecto-sp13_S_contig1677.4844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1677:2357..2686+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGGCCAAGATGGATGACTACGTGTCGAAAGAATTTCCTTTCGTTTT
GACCAAAAAAGCGGCGATCAGTAAGAGCGTCGTTGACCGCCTAGCAGATG
ACCTCCTTGAGGGTACAGGTTTTGGGGCGGTTTCAAAGTCGCTGGCGAAG
ACGTATAGTTCGAGGTACTTCAATCAAGTCCGGTCGTACGTGTCGCTAGC
TAATCGCCGTGTTAGTCAGTGTAGGGGGATGTATGGGCCCCATTCTGACC
TCGGTATGATCCCAAAGTTCTCCCGTATTGGAGATCCTTCGGGTTTCAAC
AGCAGCCCACCTTCGGCTCACTACCTGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1677:2357..2686+

>mRNA_Ecto-sp13_S_contig1677.4844.1 ID=mRNA_Ecto-sp13_S_contig1677.4844.1|Name=mRNA_Ecto-sp13_S_contig1677.4844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1677:2357..2686+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGACTACGTGTCGAAAGAATTTCCTTTCGTTTTGACCAAAAAAGC
GGCGATCAGTAAGAGCGTCGTTGACCGCCTAGCAGATGACCTCCTTGAGG
GTACAGGTTTTGGGGCGGTTTCAAAGTCGCTGGCGAAGACGTATAGTTCG
AGGTACTTCAATCAAGTCCGGTCGTACGTGTCGCTAGCTAATCGCCGTGT
TAGTCAGTGTAGGGGGATGTATGGGCCCCATTCTGACCTCGGTATGATCC
CAAAGTTCTCCCGTATTGGAGATCCTTCGGGTTTCAACAGCAGCCCACCT
TCGGCTCACTACCTGGGA
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