prot_Ecto-sp13_S_contig1671.4809.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1671.4809.1
Unique Nameprot_Ecto-sp13_S_contig1671.4809.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length225
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1671.4809.1 vs. uniprot
Match: D7FXV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV5_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 5.070e-109
Identity = 173/224 (77.23%), Postives = 175/224 (78.12%), Query Frame = 0 
Query:    1 MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAWQAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDELEVSLALSLSEATTGAALLDLLVAKPASWSLFAPAPDGHYRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKARKKNCISSLPEVRMYAQNIALLAARGYTMIPSSTYGPVIRPV 224
            MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAW+AFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDE                                       YRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNK         L EVRMYAQNIALLAARGYTMIPSS+YGPVIRPV
Sbjct:    1 MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDE---------------------------------------YRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNK---------LAEVRMYAQNIALLAARGYTMIPSSSYGPVIRPV 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1671.4809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXV5_ECTSI5.070e-10977.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..224
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.851
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1671contigEcto-sp13_S_contig1671:4381..10499 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1671.4809.1mRNA_Ecto-sp13_S_contig1671.4809.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1671 3538..10499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1671.4809.1 ID=prot_Ecto-sp13_S_contig1671.4809.1|Name=mRNA_Ecto-sp13_S_contig1671.4809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MKTRHSALVIFIVASWVGLAQSWGGGRRAEDKTHTLAWQAFSADMGRGDC
TMDSLSEQASVTLPIGQTVTKDELEVSLALSLSEATTGAALLDLLVAKPA
SWSLFAPAPDGHYRLACENSMGDTTVGETSLHDGKLVSIDRVNFSVEAMV
TAKATSLKTGFQQDVSYPAAFFMTIDLRTNKARKKNCISSLPEVRMYAQN
IALLAARGYTMIPSSTYGPVIRPV*
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