mRNA_Ecto-sp13_S_contig16705.4806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16705.4806.1
Unique NamemRNA_Ecto-sp13_S_contig16705.4806.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16705.4806.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 521 bits (1343), Expect = 9.020e-173
Identity = 316/388 (81.44%), Postives = 324/388 (83.51%), Query Frame = 1 
Query:    7 SAHVRVLDIAVSLARKAIERLSRECSADPKVGKAAARLRGLTAAACFAPVSPALDGGGEADEKWQTKEQAPAAPNSDNLDRMGKKDVDKLLVCISGGEAKKDEVYLSLPCICVEAIGALRRQEKSVRERGRVGSLQCRCLVAILAPRTYATIAEAFAAALRCMTRGAVGGPEGEWTRRPTLNDANVRHTLFACCCHLAEGLPAAACPPPDDSRLRGHGKLVSALKACHVMRGFVADGHPLPLATAPPGGGSGEAAETAAEVIVGVSGAAGIGSACASSCIVKAATSSTTESASKTADDYCAGAETAATVEADCAEAXXXXXXXXXXXXXXXXXXXXXXHAA-VEGDFEPGHELDAGVVDARSSNGSLSKSATVSDAAVASISPATGER 1167
            +AHVRVLDIAVSLARKAIERLSRECSADP VGKAAARLRGLTAAACFA VSPALDGGGEADEK QTKEQ PAAPNSDNLDRMGKKDVDKLLVCISGGE KKDE YLS PCICVEAIGALRRQEKSV              VA LAP TYATIAEAFAAALRCMTRGAVGGPEGEW+RRP LNDANVRHTLFACCCHLAEGLPAA  PPPDDSRLRGHGKLVSALKACHVMRGFV DGHPLPLATA PGGGSGEA   AA V++  SGAAGIGSACASS +V          ASKTA D+CAGAE AATVEADCAE XXXXXXXXXXXXX   XXXXXX    VE D E GHE DAGVVDARSS G LSKSA  S+AAVAS+ PATGER
Sbjct:  224 AAHVRVLDIAVSLARKAIERLSRECSADPSVGKAAARLRGLTAAACFASVSPALDGGGEADEKSQTKEQVPAAPNSDNLDRMGKKDVDKLLVCISGGEGKKDEAYLSPPCICVEAIGALRRQEKSV--------------VATLAPPTYATIAEAFAAALRCMTRGAVGGPEGEWSRRPALNDANVRHTLFACCCHLAEGLPAATSPPPDDSRLRGHGKLVSALKACHVMRGFVTDGHPLPLATARPGGGSGEAPAVAAGVVIRGSGAAGIGSACASSSVVTXXXXXXXXXASKTAGDHCAGAEAAATVEADCAEXXXXXXXXXXXXXXVPLXXXXXXXXXXVESDVELGHEKDAGVVDARSSEGPLSKSAAASNAAVASLCPATGER 597
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BLAST of mRNA_Ecto-sp13_S_contig16705.4806.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 5.750e-142
Identity = 242/309 (78.32%), Postives = 247/309 (79.94%), Query Frame = 1 
Query:    7 SAHVRVLDIAVSLARKAIERLSRECSADPKVGKAAARLRGLTAAACFAPVSPALDGGGEADEKWQTKEQAPA-------------APNSDNLDRMGKKDVDKLLVCISGGEAKKDEVYLSLPCICVEAIGALRRQEKSVRERGRVGSLQCRCLVAILAPRTYATIAEAFAAALRCMTRGAVGGPEGEWTRRPTLNDANVRHTLFACCCHLAEGLPAAACPPPDDSRLRGHGKLVSALKACHVMRGFVADGHPLPLATAPPGGGSGEAAETAAEVIVGVSGAAGIGSACASSCIVKAATSSTTESASKTA 894
            SAHVRVLDIAVSLARKAIERLSRECSADP VGKAAARLRGLTAAACFAPVSPALDGGGEAD                        APNSDNLDRMGKKDVDKLL+C+SGGEAKKDEVYLSLPCIC+EAIGALRR                   VA LAPRTYATIAEAFAAALRCMTRGAVGGPEGEWTRRP LNDANVRHTLFACCC+LAEGLPAAACPPPDDSRLRG GKLVSALKACHVMRGFVADGHPLPLATA PGGGSGEAAETAA V+VG SGAAGIGSACA           TT SASKTA
Sbjct:  222 SAHVRVLDIAVSLARKAIERLSRECSADPSVGKAAARLRGLTAAACFAPVSPALDGGGEADXXXXXXXXXXXXXXXXXXXXXXXXAPNSDNLDRMGKKDVDKLLMCVSGGEAKKDEVYLSLPCICIEAIGALRR-------------------VATLAPRTYATIAEAFAAALRCMTRGAVGGPEGEWTRRPALNDANVRHTLFACCCNLAEGLPAAACPPPDDSRLRGRGKLVSALKACHVMRGFVADGHPLPLATAQPGGGSGEAAETAAGVVVGGSGAAGIGSACAXXXXXXXXXXXTTGSASKTA 511
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16705.4806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP83_9PHAE9.020e-17381.44EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRR3_ECTSI5.750e-14278.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16705contigEcto-sp13_S_contig16705:665..3846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1167
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003540.1
Cds size1167
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.4142969-CDS-Ecto-sp13_S_contig16705:664..8621681462876.4142969-CDS-Ecto-sp13_S_contig16705:664..862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16705 665..862 +
1681462876.4270542-CDS-Ecto-sp13_S_contig16705:1827..20541681462876.4270542-CDS-Ecto-sp13_S_contig16705:1827..2054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16705 1828..2054 +
1681462876.4356897-CDS-Ecto-sp13_S_contig16705:2296..24381681462876.4356897-CDS-Ecto-sp13_S_contig16705:2296..2438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16705 2297..2438 +
1681462876.4438205-CDS-Ecto-sp13_S_contig16705:3246..38461681462876.4438205-CDS-Ecto-sp13_S_contig16705:3246..3846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16705 3247..3846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16705.4806.1prot_Ecto-sp13_S_contig16705.4806.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16705 665..3846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16705.4806.1

>prot_Ecto-sp13_S_contig16705.4806.1 ID=prot_Ecto-sp13_S_contig16705.4806.1|Name=mRNA_Ecto-sp13_S_contig16705.4806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=389bp
AVSAHVRVLDIAVSLARKAIERLSRECSADPKVGKAAARLRGLTAAACFA
PVSPALDGGGEADEKWQTKEQAPAAPNSDNLDRMGKKDVDKLLVCISGGE
AKKDEVYLSLPCICVEAIGALRRQEKSVRERGRVGSLQCRCLVAILAPRT
YATIAEAFAAALRCMTRGAVGGPEGEWTRRPTLNDANVRHTLFACCCHLA
EGLPAAACPPPDDSRLRGHGKLVSALKACHVMRGFVADGHPLPLATAPPG
GGSGEAAETAAEVIVGVSGAAGIGSACASSCIVKAATSSTTESASKTADD
YCAGAETAATVEADCAEAAAAAESAADATAVVPVAAAAAAHAAVEGDFEP
GHELDAGVVDARSSNGSLSKSATVSDAAVASISPATGER
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mRNA from alignment at Ecto-sp13_S_contig16705:665..3846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16705.4806.1 ID=mRNA_Ecto-sp13_S_contig16705.4806.1|Name=mRNA_Ecto-sp13_S_contig16705.4806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16705:665..3846+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTCAGTGCGCACGTCCGTGTGCTTGACATAGCCGTGAGCCTGGCGAG
GAAGGCGATCGAGAGGCTCAGCCGAGAGTGCTCCGCCGACCCAAAGGTGG
GCAAGGCGGCGGCGAGGCTGCGGGGGCTCACGGCGGCCGCCTGCTTCGCG
CCCGTGTCTCCTGCCCTCGACGGCGGTGGCGAAGCCGACGAAAAATGGGT
AAGGTCTTGCGTTCGGTTGTACCGGCTGCTTGCCCCTTGCTCCGTTTTGG
ATTTTGATGCTTTCGGGCCGTGCCGCTGGCGCTACGGCTGCCACTGCCGC
TGCCGCCGGCGATAGATATGGCCTGCCATCGCTCGCAGTCTGTTCCTTTT
TCTTGCCCGAAGGGTGGGAATTTTTTACTGTGGCGATGGCGATGTTCGCT
ACGGCGCTGCCGAGCGGCGCATTCTTCAGTGTTCCTCTTCTTCGACGCTA
TGTCTTTCGTTAGTCGAGAGGTATTCGTTCGAATGGGTCGTGAGTGTGTT
TTTGACTGACTACGGGATTCACCCCGCTGGGAGCCGTACAGTCGACCCCG
CTTCAAGGATACCGGTGCATTTGTAGAAGTATCCTTTAGACCGGAACCTC
CCCTCGTATATTATTCGTCCGTGGGGCATCTTGCTTCTGAGATTTGGTTT
TGTCCATGAACGGGGAGTTGACTTCAAATAAGTGTCTGGAAAAGCTTTTT
GCGTAGTATTGTAAAATAACTTACCGGCTGGTCGTACTTCACACCCTGTC
TGCTCTGCTTTTCGTCTCCGTCGTTCGATCCCATACCACCCGAGATAGGG
ATCGATAAACTCATCACATATTGGATGCTTGCCTACGCAGTAGTTGCGGC
GGTTTCGCTGGGAGTGTTCCGTTCTGATCGCAAAGCCGAACCCGGAGAAA
GTTGGAGAGAGAGGCGGTGCAAAAAAAATCAGTCCAGGATCCCGTTTTAC
AACAAGATACATTCCCAACTTTCCTCTTGACAAGAAAAAGACTGTGAGAC
AACGAGGAAGCAAGGAGGAGGAGCCGTTCTTCCACCAATGAACATACCTG
TTACGACGAATACTTGGTCTAACGTGGCGTTTACTGGCGGTGGTGCGCGT
GTTGCTTTCGCCATCTGCATCGTTACGACCGCGGCGGCGGCGGCGGAACT
CCGACGACAAAAGCAAACCAAAGAACAAGCGCCGGCGGCGCCGAACTCAG
ACAACCTTGACAGGATGGGGAAGAAGGACGTGGACAAGCTCTTGGTGTGC
ATCTCGGGGGGCGAGGCCAAGAAAGACGAGGTGTACCTGTCTCTGCCCTG
CATCTGCGTCGAGGCGATAGGAGCCCTTCGAAGGCAAGAGAAGAGTGTGC
GGGAGAGGGGAAGGGTGGGTTCACTTCAATGTAGATGTTTGTCGTCGTGA
GGAACACGTTCCTTCGCCTTGACACTCCGCACTTCTGCCTGTCCGGTTGC
TCTTCTGTCTGTCTTGTGTATCTGCCTTTATCTATCTCTCTCTCTTTCTC
TCATTCTCTCTCTCTCTCTCCCTCCCCCTCGATGTACACATCTGTTGATA
TCTCCCTCGTTCACCGCTCTCCCCCTCTCATTTCCTATGTCGTCGTGATC
CCTTGCCCCGACTATCTTCCCACCCTCCCCAGGGTTGCGATTCTGGCGCC
GCGGACGTATGCCACCATCGCCGAGGCCTTCGCGGCGGCGTTGCGGTGCA
TGACTCGGGGGGCCGTCGGGGGCCCTGAAGGGGAATGGACCCGCCGGCCG
ACGCTCAACGACGCCAACGTTCGGGTGAGGGCTTGCCGCAGCAGGCACGC
CGGCTGAGGTAGTTAGAGCCGCCTCGGTTCGTCTTGTACGCGCGTACGCG
CGCCACGAAAGATGCCATGATTGGACGGGTCAGAAAAAGAATCGTTTCCG
ACGTGGATGGGATGCCCTTTGAACAAAGGGTCAGCTTTCGCGGTTGACGA
CGGCAGCCATCTCTGGGTTTTTGGGAGTTGATTGTATGCGTAGACGTTTA
AGAAGGAGTGTTTTGTCGGAGACGGATGAGAAGCTTACCAACACTTTGTG
TTTTGTGTTGTTTTGCCCGAAGGGTTTCCTCTTTGTTTGATGTTGCGCGC
GCGTGGCGGCTTCCTTGTCAAAAACATCCCGTGAGTAGGACATAACACAT
GACGCGTTGTAGGACAACACGCATGAAACGTTCCTCCGTTGAAAATAGAG
TGTTGGGCGCGCGCTCCTCTCATGCCGACGGCCCTGTTTACTGTTGCCTG
CTTTCCGCGCCGGCCGCACGCCGCCGCGCCTCGCGCGATGTGCTGCACTG
CAGCGTGAGGCTGCGCCGGCGGGCTGTGTCCATGTCGCTCCGGTCGGCCT
CACCGTTGACCTTTCCGCGCCATATCTCCTCACTGACATGGGCCCCTCCC
GTTTCATACTCAACACCTCCAGATCGGCCCGTCCGCCAAGGTGGCGCGAT
AACGATGTCATTTCCACCCACCTGGGTGGTCATGTTGCTCCAATCTTACC
CCTCTGCTGTGTATACCACGTGTGTGTGTGTGCTTCCGTCTCCGCGCGTG
CGTGTGTACACCTGTTTGTCTGTTGTGCGCAGCACACGCTGTTCGCCTGC
TGTTGCCACCTGGCCGAGGGACTGCCCGCTGCCGCCTGCCCGCCGCCGGA
CGACAGCCGCCTTCGGGGGCACGGCAAGCTCGTGTCCGCCCTCAAGGCCT
GCCACGTCATGCGGGGCTTCGTCGCGGACGGCCACCCCCTTCCTCTTGCC
ACCGCCCCACCCGGGGGCGGTAGCGGCGAAGCCGCCGAGACGGCGGCCGA
GGTGATCGTCGGTGTAAGCGGCGCCGCCGGCATCGGGAGCGCCTGCGCTT
CCTCATGCATTGTCAAGGCCGCCACCTCCTCGACGACCGAGTCTGCCTCG
AAGACTGCCGATGACTACTGTGCTGGTGCTGAAACTGCTGCTACTGTTGA
AGCCGATTGCGCTGAAGCTGCTGCTGCGGCTGAGTCGGCGGCGGACGCTA
CGGCGGTCGTTCCAGTCGCTGCCGCTGCTGCTGCTCATGCTGCCGTTGAG
GGCGACTTTGAGCCTGGACACGAACTGGATGCAGGCGTCGTCGATGCGCG
TAGCAGCAATGGGTCTCTCTCGAAATCCGCCACCGTTTCCGATGCGGCGG
TCGCGTCTATCAGTCCCGCCACTGGGGAGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16705:665..3846+

>mRNA_Ecto-sp13_S_contig16705.4806.1 ID=mRNA_Ecto-sp13_S_contig16705.4806.1|Name=mRNA_Ecto-sp13_S_contig16705.4806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16705:665..3846+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTCAGTGCGCACGTCCGTGTGCTTGACATAGCCGTGAGCCTGGCGAG
GAAGGCGATCGAGAGGCTCAGCCGAGAGTGCTCCGCCGACCCAAAGGTGG
GCAAGGCGGCGGCGAGGCTGCGGGGGCTCACGGCGGCCGCCTGCTTCGCG
CCCGTGTCTCCTGCCCTCGACGGCGGTGGCGAAGCCGACGAAAAATGGCA
AACCAAAGAACAAGCGCCGGCGGCGCCGAACTCAGACAACCTTGACAGGA
TGGGGAAGAAGGACGTGGACAAGCTCTTGGTGTGCATCTCGGGGGGCGAG
GCCAAGAAAGACGAGGTGTACCTGTCTCTGCCCTGCATCTGCGTCGAGGC
GATAGGAGCCCTTCGAAGGCAAGAGAAGAGTGTGCGGGAGAGGGGAAGGG
TGGGTTCACTTCAATGTAGATGTTTGGTTGCGATTCTGGCGCCGCGGACG
TATGCCACCATCGCCGAGGCCTTCGCGGCGGCGTTGCGGTGCATGACTCG
GGGGGCCGTCGGGGGCCCTGAAGGGGAATGGACCCGCCGGCCGACGCTCA
ACGACGCCAACGTTCGGCACACGCTGTTCGCCTGCTGTTGCCACCTGGCC
GAGGGACTGCCCGCTGCCGCCTGCCCGCCGCCGGACGACAGCCGCCTTCG
GGGGCACGGCAAGCTCGTGTCCGCCCTCAAGGCCTGCCACGTCATGCGGG
GCTTCGTCGCGGACGGCCACCCCCTTCCTCTTGCCACCGCCCCACCCGGG
GGCGGTAGCGGCGAAGCCGCCGAGACGGCGGCCGAGGTGATCGTCGGTGT
AAGCGGCGCCGCCGGCATCGGGAGCGCCTGCGCTTCCTCATGCATTGTCA
AGGCCGCCACCTCCTCGACGACCGAGTCTGCCTCGAAGACTGCCGATGAC
TACTGTGCTGGTGCTGAAACTGCTGCTACTGTTGAAGCCGATTGCGCTGA
AGCTGCTGCTGCGGCTGAGTCGGCGGCGGACGCTACGGCGGTCGTTCCAG
TCGCTGCCGCTGCTGCTGCTCATGCTGCCGTTGAGGGCGACTTTGAGCCT
GGACACGAACTGGATGCAGGCGTCGTCGATGCGCGTAGCAGCAATGGGTC
TCTCTCGAAATCCGCCACCGTTTCCGATGCGGCGGTCGCGTCTATCAGTC
CCGCCACTGGGGAGAGA
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