mRNA_Ecto-sp13_S_contig1050.478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1050.478.1
Unique NamemRNA_Ecto-sp13_S_contig1050.478.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1050.478.1 vs. uniprot
Match: D8LC41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC41_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.000e-26
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:   84 SLFWCVCNFRKGGRRALPPFCPFQPLREQPRATCGRSIPDGHDDFFE 224
            SLFWCVCN RKG RRALPPFC FQPLREQPRATCGRSIPDGHDDFFE
Sbjct:   33 SLFWCVCNSRKGRRRALPPFCSFQPLREQPRATCGRSIPDGHDDFFE 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1050.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC41_ECTSI1.000e-2693.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1050contigEcto-sp13_S_contig1050:5554..5780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size227
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004360.1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462535.2419431-CDS-Ecto-sp13_S_contig1050:5555..57801681462535.2419431-CDS-Ecto-sp13_S_contig1050:5555..5780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1050 5556..5780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1050.478.1prot_Ecto-sp13_S_contig1050.478.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1050 5556..5780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1050.478.1

>prot_Ecto-sp13_S_contig1050.478.1 ID=prot_Ecto-sp13_S_contig1050.478.1|Name=mRNA_Ecto-sp13_S_contig1050.478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
PFVFSSSVCREVSAVVVVAVFPSLVSLIPFFGACVISGRAGAELCPPFAL
FSLYENNRVPRAGEASRTAMMIFSR
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mRNA from alignment at Ecto-sp13_S_contig1050:5554..5780-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1050.478.1 ID=mRNA_Ecto-sp13_S_contig1050.478.1|Name=mRNA_Ecto-sp13_S_contig1050.478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1050:5554..5780- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTTTGTTTTCTCCAGCTCCGTGTGTCGAGAGGTTTCAGCGGTGGTGGT
GGTTGCTGTGTTTCCCAGTCTTGTCAGTCTCATTCCCTTTTTTGGTGCGT
GTGTAATTTCAGGAAGGGCGGGCGCAGAGCTCTGCCCCCCTTTTGCCCTT
TTCAGCCTTTACGAGAACAACCGCGTGCCACGTGCGGGCGAAGCATCCCG
GACGGCCATGATGATTTTTTCGAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1050:5554..5780-

>mRNA_Ecto-sp13_S_contig1050.478.1 ID=mRNA_Ecto-sp13_S_contig1050.478.1|Name=mRNA_Ecto-sp13_S_contig1050.478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1050:5554..5780- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTTTGTTTTCTCCAGCTCCGTGTGTCGAGAGGTTTCAGCGGTGGTGGT
GGTTGCTGTGTTTCCCAGTCTTGTCAGTCTCATTCCCTTTTTTGGTGCGT
GTGTAATTTCAGGAAGGGCGGGCGCAGAGCTCTGCCCCCCTTTTGCCCTT
TTCAGCCTTTACGAGAACAACCGCGTGCCACGTGCGGGCGAAGCATCCCG
GACGGCCATGATGATTTTTTCGAGG
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