mRNA_Ecto-sp13_S_contig1665.4766.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1665.4766.1
Unique NamemRNA_Ecto-sp13_S_contig1665.4766.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1665.4766.1 vs. uniprot
Match: D7FZV3_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV3_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 9.870e-89
Identity = 167/206 (81.07%), Postives = 169/206 (82.04%), Query Frame = 1 
Query:    1 MSKKAGKKAKVKVPEIDPNSPEWIEEVARKQSEAYDMVQRAMTRSQIEVVQATRDNLVIQRAELETKAKQQSQDQSDIYQYLRKKLQDNYVAIAELETQVSHAHKDRLVREKQLLATIKDLNEERESEKIRLEEKLATLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEIALLNSQLEEEWETGRRDKEERRKITKKA 618
            MSKKAGKKAKVKVPEIDPNSPEWIEEVARKQSEAY MVQRAMTRSQIEVV  TRDNLVIQRAELETKAKQQSQDQSDIYQYLR KL+DNYVAIAELE Q                              IRL EKL TLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEE+ALLNSQLEEEWETGRRDKEERRKITKKA
Sbjct:    1 MSKKAGKKAKVKVPEIDPNSPEWIEEVARKQSEAYGMVQRAMTRSQIEVVLTTRDNLVIQRAELETKAKQQSQDQSDIYQYLRNKLKDNYVAIAELEAQ------------------------------IRLGEKLGTLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKA 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1665.4766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZV3_ECTSI9.870e-8981.07Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1665contigEcto-sp13_S_contig1665:8125..11750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size619
Hectar predicted targeting categoryother localisation
Exons5
Cds size618
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.3630826-CDS-Ecto-sp13_S_contig1665:8124..82621681462873.3630826-CDS-Ecto-sp13_S_contig1665:8124..8262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1665 8125..8262 +
1681462873.372113-CDS-Ecto-sp13_S_contig1665:8868..90271681462873.372113-CDS-Ecto-sp13_S_contig1665:8868..9027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1665 8869..9027 +
1681462873.3813744-CDS-Ecto-sp13_S_contig1665:10233..103231681462873.3813744-CDS-Ecto-sp13_S_contig1665:10233..10323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1665 10234..10323 +
1681462873.3941333-CDS-Ecto-sp13_S_contig1665:10861..109511681462873.3941333-CDS-Ecto-sp13_S_contig1665:10861..10951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1665 10862..10951 +
1681462873.4026294-CDS-Ecto-sp13_S_contig1665:11609..117501681462873.4026294-CDS-Ecto-sp13_S_contig1665:11609..11750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1665 11610..11750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1665.4766.1prot_Ecto-sp13_S_contig1665.4766.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1665 8125..11750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1665.4766.1

>prot_Ecto-sp13_S_contig1665.4766.1 ID=prot_Ecto-sp13_S_contig1665.4766.1|Name=mRNA_Ecto-sp13_S_contig1665.4766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
MSKKAGKKAKVKVPEIDPNSPEWIEEVARKQSEAYDMVQRAMTRSQIEVV
QATRDNLVIQRAELETKAKQQSQDQSDIYQYLRKKLQDNYVAIAELETQV
SHAHKDRLVREKQLLATIKDLNEERESEKIRLEEKLATLDVELTAIKEYQ
ENSQIYEQTLKDMEAKIAGCKDAFNEEIALLNSQLEEEWETGRRDKEERR
KITKKA
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mRNA from alignment at Ecto-sp13_S_contig1665:8125..11750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1665.4766.1 ID=mRNA_Ecto-sp13_S_contig1665.4766.1|Name=mRNA_Ecto-sp13_S_contig1665.4766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3626bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1665:8125..11750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGAAGGCAGGAAAAAAAGCCAAGGTCAAGGTGCCAGAGATCGA
CCCAAATTCGCCAGAATGGATCGAGGAGGTTGCTCGGAAGCAAAGCGAAG
CATACGACATGGTGCAGAGAGCCATGACCCGGAGCCAGGTGTAATTTTGT
GGGAACACTTTTCCCACTTTTTTTTTTAATGTTTAAGCTGTTTACGGGAC
CGTAGTAACCGGAAGTCTTGACCAGCTTTTTCTCTCGCGGACATTCTCAC
ATGTTTGCAGAGGTCAGCATGTGCAGGGCTCTCCATGGTGGAGCGCGAAC
CTTACGTCGACCCAATTTTTTTTCCTTCAAGAGCGCACATGTGCTTATTT
GGCGAAGTGTCGAATGCCTGAGTGCACACACACATATAAATTCCTCGCTA
TCGTGAAATGCGTGCTACCATCCGTAAGCTTGGAACCGCCCGAATGGTGT
ACTGACCGAAGCATGCCTCTTGAGTACGTCAGTATCATATTATCTTCGCC
TGCAGTTGAGACAGTTTTCGAGCAGCAAGGCGTCGCATCGATGCAGATCG
GACGCAGGTCGATCTCTTTCAAACTATCGACAACAGGCTCGATTCTGCCA
CGCGCACGCGACGCGTTGCACGCCAAAAAAGGCGAGGTACAGCTGTAACC
AGCACCGAGTGTGTGGCTCGTTGAAACACAGGCCCATCTTGTACAGTCAG
ATGGTCATATGGTTTCAAACCCTTTCACGTTTCTGTCGTTGCAGATCGAA
GTGGTGCAAGCCACCAGAGACAACTTGGTGATCCAAAGGGCGGAACTTGA
GACCAAGGCCAAGCAGCAGTCGCAGGACCAGAGCGACATCTACCAGTACC
TTCGAAAGAAACTCCAAGACAATTACGTCGCAATCGCCGAGCTCGAAACT
CAGGTACGAGGTGGGGGTCAACAGGTCACCGCAGCAGATACTCTCGCAAG
GTCCAGCGAGGAACATTTTTACCTGCATTTGTACGAAGGGAGAAAGACAG
CCCAACACATCGTAGCATGCTGAGTGTATCGACCCGAAGTTGAACAGCCC
TGACGGAGCCTCCACCCGTGGCTGAGGAAACTCGTTCTGAGCAAGAACGC
GACGTATTGGCCTCCCGAGCTTCACAATCCTTAGTATGCCTCTCTCTCGG
TCCAAATTCCAGTGCTGTGTAGTTCTCCTAGTCCACGGTGTCTAGCGTGC
CTTCACCTGTACGTGAAATCGCCGACAAATATTCCGGGACCCAAAAACTT
GGCAGCAAAAGCGCCTCTGGGGATTCGTAGGCTTTGGTATTGCAACTAAT
AACAGTTTGCACTGTTTGCGTCTGAACAAACATACTTTCTTTTATCCCCA
ACAACTCGGTTTGGATTTTGGTTAACCCCTGTACCGCTTCATACTGGTCG
CCATATTGCGCCGCCATTTGTTCCAGGGGGGGGGGCAGAGGGCAGGATGA
TGGAAACCCTAAAGTTCCGAAACATTGGCAACGCCAGAGGCATAAGACAG
TAGAGCTTGAGGGGGTTGTCCTCTCACTACAATCCTCCTGTTCTCGAAAT
GTCTTTGGTCAGAGGCCTCCAATAGATGGTGCACAGCGAACCGACTTTCG
AAGCCGTAATATAAGCAAGCGATGCTTACTGCTGTGCAGCTGGTGTCGTT
TGGGGGTGGTTTGACAACATTTTTTGTCATGAGGCGATCGTAGCCTGACG
GTCCAAAACGATGGCGACTCAGACGTACCACGAGACACAGCTTCATGAAT
GGGGTAGCTGTTCGACTACCCTTTATTTAGTGGCTCAAATGCTCCCAAAC
ACATGAGAAACATTTCCATGCCTGACCACACAGACAAATGCGTTCGTTAA
TACATCAAAGTGAAAGCCTCGCCAACGTTCTTTAGCGATGCTTCGTCCTA
GAAAACAGAGCAAATCAGTGCGCATGCAGTCTCTCTGTGGACAGAATTCT
TTCCTGGCCCATGGAACGTGTGTAGAGAAACCTAACCCGGGCGGTAAGAT
GTTTACAGCGTGCATACGAGAACCATACTCGATGGAAACCTTTGACATGC
ACAACTGGCACGTGGTTTGTACTTCTTCCAATGTCCTTCCAAAAATGACT
CGTACAAAGGTGTCGCATGCTCACAAGGACAGGCTAGTGCGGGAAAAACA
GCTTCTTGCTACGATAAAGGATCTGAACGAAGAGCGCGAGAGCGAAAAGG
TATAGTCTTCTGCTAGGTTTGTGTTTGGGTAGCTTTCTGCTCCGCCGACA
GACGAAAGGAAACATCTTCAGTCGCGCCGTGGACGGAAGCGAGCGACACC
AACTTTTGCGTACCTGTCAAAGACGTGCGCATTTCTATGCAGATCAGCAC
GGTGAGGCGCCTAACGATCTAAGTTGCAAGCAGGCACCTCGACTATGTCA
AGCGCTCGGCATCGGGTGATTTTGCACCAATCTCAGCAGGTACTGCCTGG
TACGGGCCTGCCTTTACCCGAAGTCGGCGTCCTTGAGGATTGACGTTGCT
GATGCACTGGAAATCATGTTCGTACCCTGTCAAGAGCATCAGGCATGGAA
GCGTTGGCCGCGGCAATGGCAACCCGAAATCCCGCTTCTTCACTCCACAA
CCAGTGTCCGGGCATTTTCTCCATGAGAGCCTCGTATTTTTACCGTTCTA
CCCTTCGTCAAAGTTTCCCAGCGGCCACACAACCACAGTAAACCCCCATG
ACCACCTCGTGCACTATCATTCACTAATCCCTGACAGATACGGCTGGAGG
AGAAACTGGCGACCCTCGACGTCGAGCTCACAGCAATCAAAGAATACCAG
GAGAACTCACAAATCTACGAGCAGACGGTACGAGGCTACCGTGAAGGCGT
TGTCGCTCTGGTGGTTATACTTTTCGATCGGTCACGCGGCCTGCAATGTA
ACACCCTGTGGCTTTGGGTGGCAGCGCCTGCATTGAGGCACCGCTGTCGC
GGGCATTGTTTGTTGAAACAGCCGTGATGGGCGTTGCTTTTGGTGTAAGT
TTGGCGGTTCCCTGTTGTTTCTGATAAGTTCCCTCCGCCTGGTTCCGGAC
AGCGTGTGTTAATCATCTCATGAACAAGTGTACATGTTCGAGCTTGCAAG
ATGGAAACTTCAAATCCTTGTCGCACGCCCAAACGTCAGCACGGAAACCG
AGCGTTTTCCTCTTCCATGCTTGATGAGAGTATGGGTTGGAACACGTCCG
TCGTCTACTGCAGACATGCTTTTCTCACCATGCTCAGTGCGGCGAGCGGC
TTCGTGCCCCTAGCCATTCCTGTGGTTTCCCAGTCACAAAAGGCACCATG
ATGGACTCCAACCTCTCATGTAGCGCTTATCTTAGTCGTTCTGGTGAGCA
ACATTGGTCCAACAGGGCACTAGCAGTAATTCCTAACTGCGTTTTATGGT
GCACATCTCGCCGCGTAGTCAAGTTCGCTGCTTTTGTTTACATGGTCAAT
CATCGCTGTGTTCGTGGTGCGGCTCGCTAACGTAGTTGAAAGACATGGAG
GCCAAAATCGCTGGCTGCAAGGACGCCTTCAATGAAGAGATAGCCTTGCT
AAACTCCCAGCTGGAGGAGGAGTGGGAAACTGGCCGCCGAGACAAAGAGG
AGCGGCGGAAGATTACGAAAAAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1665:8125..11750+

>mRNA_Ecto-sp13_S_contig1665.4766.1 ID=mRNA_Ecto-sp13_S_contig1665.4766.1|Name=mRNA_Ecto-sp13_S_contig1665.4766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1665:8125..11750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGAAGGCAGGAAAAAAAGCCAAGGTCAAGGTGCCAGAGATCGA
CCCAAATTCGCCAGAATGGATCGAGGAGGTTGCTCGGAAGCAAAGCGAAG
CATACGACATGGTGCAGAGAGCCATGACCCGGAGCCAGATCGAAGTGGTG
CAAGCCACCAGAGACAACTTGGTGATCCAAAGGGCGGAACTTGAGACCAA
GGCCAAGCAGCAGTCGCAGGACCAGAGCGACATCTACCAGTACCTTCGAA
AGAAACTCCAAGACAATTACGTCGCAATCGCCGAGCTCGAAACTCAGGTG
TCGCATGCTCACAAGGACAGGCTAGTGCGGGAAAAACAGCTTCTTGCTAC
GATAAAGGATCTGAACGAAGAGCGCGAGAGCGAAAAGATACGGCTGGAGG
AGAAACTGGCGACCCTCGACGTCGAGCTCACAGCAATCAAAGAATACCAG
GAGAACTCACAAATCTACGAGCAGACGTTGAAAGACATGGAGGCCAAAAT
CGCTGGCTGCAAGGACGCCTTCAATGAAGAGATAGCCTTGCTAAACTCCC
AGCTGGAGGAGGAGTGGGAAACTGGCCGCCGAGACAAAGAGGAGCGGCGG
AAGATTACGAAAAAGGCG
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