mRNA_Ecto-sp13_S_contig1664.4758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1664.4758.1
Unique NamemRNA_Ecto-sp13_S_contig1664.4758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE)

HSP 1 Score: 444 bits (1143), Expect = 6.420e-141
Identity = 246/269 (91.45%), Postives = 246/269 (91.45%), Query Frame = 1
Query:    1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQMV 807
            RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGG AAGVSSSPGAVGASRGMLEKLQGAQSHRA LRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLK QSRNA AVGGRGG         QMSQTSQMSEGQQVAMALPFP A         SALSLAEGFGLLRRCLTQQMV
Sbjct:  526 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGGAAGVSSSPGAVGASRGMLEKLQGAQSHRAALRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKAQSRNAAAVGGRGGLSGGSNGGTQMSQTSQMSEGQQVAMALPFPQAAGSGGGG--SALSLAEGFGLLRRCLTQQMV 792          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 2.610e-138
Identity = 249/270 (92.22%), Postives = 250/270 (92.59%), Query Frame = 1
Query:    1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXX-SALSLAEGFGLLRRCLTQQMV 807
            RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGG     SSSPGAVGASRGMLEKLQGAQSHRA LRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNA AV GRGG         QMSQTSQMSEGQQ+AM LPFPLA XXXXXXXX SALSLAEGFGLLRRCLTQQMV
Sbjct:  508 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGG----SSSPGAVGASRGMLEKLQGAQSHRAALRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAAAVAGRGGLSGGSNGGTQMSQTSQMSEGQQMAMVLPFPLAAXXXXXXXXXSALSLAEGFGLLRRCLTQQMV 773          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI001E1DAE8E (Fanconi anemia group I protein-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DAE8E)

HSP 1 Score: 120 bits (300), Expect = 6.100e-27
Identity = 92/268 (34.33%), Postives = 142/268 (52.99%), Query Frame = 1
Query:    4 VLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMS-EGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            V+ TV   + GWDH+V  L++LG  L+D         S  P AV     +L  +Q   +H+       LG  +L++TFK HE+VR ++L  +  +V T  +  V  +++LLG +V   P LLL     V+++F Y+S L PT AE  L+A+ PL++L   L+DS++L LRKA+FSR+  AR +   G +++LK    +   +GG            + SQ+SQ S    Q+++ +  P            A+ L E  G LRRCL+QQ
Sbjct:  367 VIQTVQNSTYGWDHVVQGLVQLGFILMD---------SFGPKAVFGRIDILPSIQTGPTHQTC----QLGAKILLKTFKAHEMVRSEILEQIFNRVITKATSPVSHFLELLGDIVFASPQLLLDSTTKVREMFDYLSFLCPTSAEGLLRAIQPLLKLSMNLKDSLILVLRKAMFSRQLDARKIGASGFLMILK----HFRVLGG-----------IRSSQSSQPSFSSSQISVDVHIP-----HNASSNEAMCL-EILGNLRRCLSQQ 600          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI00201F5705 (Fanconi anemia group I protein-like isoform X1 n=5 Tax=Haliotis TaxID=6452 RepID=UPI00201F5705)

HSP 1 Score: 119 bits (297), Expect = 1.520e-26
Identity = 95/267 (35.58%), Postives = 139/267 (52.06%), Query Frame = 1
Query:    4 VLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            VL TV     GWDH++ SL++LG  L+D         S  P AV    G +E            ++  LG  +L+ TFK HEVVR ++L  +  +VT ++   V  Y++LL   V+  P LLL     V++ F Y+S LPP+ AE  L+A+ PL++L   L+DS++L LRKA+FS++  +R + V G +++LK    +   +GG            Q SQT  +S+  QV +  P+  A          AL L E  G LRRC TQQ
Sbjct:  366 VLETVSNSVYGWDHVIQSLVQLGFTLMD---------SFGPKAV---FGRIEPTSPTTQLTPARQSCRLGARLLINTFKAHEVVRHEILDQIFNRVTIKATSPVSHYLELLADTVKSAPQLLLESVPKVREAFDYLSFLPPSSAEGLLKAIQPLLKLSMSLKDSLILVLRKAMFSKQLDSRKIGVMGFLMILK----HFKVLGG--------LVASQSSQTFSLSQ-IQVDVHKPYNAASN-------EALCL-EILGNLRRCCTQQ 599          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A2B4SIP3_STYPI (Fanconi anemia group I protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SIP3_STYPI)

HSP 1 Score: 117 bits (294), Expect = 3.810e-26
Identity = 92/268 (34.33%), Postives = 134/268 (50.00%), Query Frame = 1
Query:    1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            ++L TV     GWDH+   L++LG  L+D  G      +SS                 Q    T  +  LG  VL++TFK HE+VR ++L  +L +V T  +  V  Y++LL   V   P++LL     V++   Y+S LPP  AE FL+A+ PL+++   L+DS+++ LRKA+FSR+  AR +AV G +L+LK    +   +GG              SQ SQ S   Q+ + +               AL L E  G LRRCLTQQ
Sbjct:  364 QILETVQNSLFGWDHVTQGLVQLGFMLMDTFGPKTFDSNSS-----------------QIPSPTQHSCRLGSSVLLDTFKAHEMVRSEILQQILNRVITKATTPVYHYIELLASTVSSAPHVLLESLPRVKEALDYLSFLPPKSAEGFLKAIQPLLKISLSLRDSLMVVLRKAMFSRQVDARKIAVTGFLLILK----HFKILGG------GITSSQSGSQPSQPSHSSQIQVDV-----HVRGGNMGNEALCL-EILGNLRRCLTQQ 598          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI0009E4B81C (Fanconi anemia group I protein-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4B81C)

HSP 1 Score: 117 bits (292), Expect = 6.830e-26
Identity = 89/257 (34.63%), Postives = 127/257 (49.42%), Query Frame = 1
Query:   34 GWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            GWDH+   L++LG  L+D  G      +SSP                     T  A  LG  +L++TFK HE+VR ++L  +L +V T  +  V  Y+ LL   V   P++LL     +++   Y+S LPP  AE FL+A+ PL+++   L+DS++L LRKA+FSR+  +R +AV G +L+LK            GG         Q+SQT   S   QV + +               AL L E  G LRRCLTQQ
Sbjct:  398 GWDHVTQGLVQLGFTLMDAFGPKIFDSTSSPNLT-----------------PTQYAYKLGSSILLDTFKAHEMVRCEILQQILNRVITKATTPVHHYIDLLASTVSSAPHVLLESLPRIKEALDYLSFLPPKSAEGFLKAIQPLLKISLSLRDSLILVLRKAMFSRQVDSRKIAVTGFLLILKHFKI-------LGGSMPSSQSGSQLSQTLSHSSQIQVDVHV-------RGGGVGNEALCL-EILGNLRRCLTQQ 622          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A7M7NTM5_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NTM5_STRPU)

HSP 1 Score: 117 bits (292), Expect = 7.030e-26
Identity = 91/271 (33.58%), Postives = 131/271 (48.34%), Query Frame = 1
Query:    1 RVLLTVVAFSR-GWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRAT--LRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            ++LL  V  S  GWDH++  L+ LG  L+D  G         PG  G      + L+G     +T   +AS LGR +L+  FK+ + +R  +L  +L +V  R+ G V  Y+KLL  +V   P  +L     V++ F Y++ LP + AE  L+A  PLMRL   L+DS++L LRKA+FSR+  AR +AV G + +LK                        MSQTSQ       +  +   +           A+   E  G LRRCLTQQ
Sbjct:  364 KLLLETVENSMYGWDHVIHGLVMLGFTLMDSFG-------PKPGPFGG-----KALEGGPGTPSTPNQQASQLGRDILLNLFKSQDGIRSSILEQILNRVVTRTAGSVSQYIKLLSSMVTSAPQTVLDCMGKVREAFDYLTYLPASTAEGLLKAFQPLMRLNVTLKDSLMLVLRKAMFSRQGEARKIAVLGYLQILKH---------------FRVFGSLPMSQTSQGYSMASTSSQIQVDIHGGSNQASNYEAIVCMEILGNLRRCLTQQ 607          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A8B7YVT3_ACAPL (Fanconi anemia group I protein-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YVT3_ACAPL)

HSP 1 Score: 115 bits (288), Expect = 2.370e-25
Identity = 88/267 (32.96%), Postives = 127/267 (47.57%), Query Frame = 1
Query:    4 VLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            +L TV   S GWDH+   L++LG  L+D  G  A  +  S           +    + +H+A      LG  +L+ TFK HE+VR  +L  +L ++  +S   V  Y+ LL   V   P +LL     V++ F Y++ LPP+ AE  L+AV PLM L   L+DS++L LRKA+FSR+  AR +AV G +L+LK    +                  Q+S  S MS   Q  +     +            +   E  G LRRC TQQ
Sbjct:  370 ILDTVQNSSYGWDHVTQGLVQLGFTLMDAFGPRAGPLGKST--------EHQTCTDSPNHQACS----LGCQILLSTFKAHEMVRPDILEQLLNRIVTKSSAPVSHYIGLLANTVNSAPQILLDSLPKVREAFDYLAFLPPSSAEGLLKAVQPLMILSVSLKDSLMLVLRKAMFSRQVDARKIAVSGYLLILKSFQVDK------------CLQSCQLSSQSYMSSSSQTLV----DIHTRSHPVNNYETMVCLEILGNLRRCFTQQ 608          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI0016022001 (Fanconi anemia group I protein-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016022001)

HSP 1 Score: 112 bits (280), Expect = 2.720e-24
Identity = 93/265 (35.09%), Postives = 131/265 (49.43%), Query Frame = 1
Query:   13 TVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQT-SQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            TV   S GWDH+   L++LG  L+D     + G    P       G + +  G      T  A  LG  +L+ TFK HE+VR  +L  +L +V  ++   V  Y++LL   V   P  LL     V+D F Y+S LP   AE  L+AV PL++L   L+D+++L LRKA+FSR+  AR VAV G +++L    R+   +GG              SQ+ SQ     Q+ + +  P +          AL L E  G LRRCLTQQ
Sbjct:  368 TVKNSSYGWDHVTQGLVQLGFTLMD-----SFGPKLGPA------GRVVESSGGTPKSPTQLACSLGAQILVNTFKVHEMVRSDILEQILNRVVTKATSPVTHYIELLSNTVSTVPQTLLECLPKVRDSFDYLSYLPAASAEGLLKAVQPLLKLSMPLKDTLMLVLRKAMFSRQADARKVAVTGFLMIL----RHFKVLGG-----------LPCSQSCSQSFSFSQIQVDIHTPPSSAGN-----EALCL-EILGNLRRCLTQQ 600          
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI001CF1C3CC (Fanconi anemia group I protein-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1C3CC)

HSP 1 Score: 112 bits (279), Expect = 3.700e-24
Identity = 93/268 (34.70%), Postives = 134/268 (50.00%), Query Frame = 1
Query:    1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
            +VL TV     GWDH+   L++LG  L+D  G  +   SSSP                 +   T  A  LG  +L++TFK HE+VR ++L  +L +V T  +  V  ++ LL   V   P++LL     V++   Y+S L P  AE FL+A+ PL+++   L+DS++L LRKA+FSR+  AR +AV G +L+LK    +   +GG            Q+SQ    S   QV + +               AL L E  G LRRCLTQQ
Sbjct:  364 QVLETVRNSLFGWDHVTQGLVQLGFTLMDAFGPKSFETSSSP-----------------NLSPTQLAYKLGSSLLLDTFKAHELVRSEILQQILNRVITKATTPVNHFIDLLASTVHAAPHVLLESLPRVKEALDYLSFLQPKSAEGFLKAIQPLLKISLTLRDSLILVLRKAMFSRQVDARRIAVTGFLLILK----HFKILGG----VSSSQPSSQLSQPLLPSSQIQVDVHV-------RGNAVSNEALCL-EILGNLRRCLTQQ 598          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q6_9PHAE6.420e-14191.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNN8_ECTSI2.610e-13892.22Fanconi anemia, complementation group I n=1 Tax=Ec... [more]
UPI001E1DAE8E6.100e-2734.33Fanconi anemia group I protein-like isoform X1 n=2... [more]
UPI00201F57051.520e-2635.58Fanconi anemia group I protein-like isoform X1 n=5... [more]
A0A2B4SIP3_STYPI3.810e-2634.33Fanconi anemia group I protein n=3 Tax=Pocillopori... [more]
UPI0009E4B81C6.830e-2634.63Fanconi anemia group I protein-like n=1 Tax=Orbice... [more]
A0A7M7NTM5_STRPU7.030e-2633.58Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]
A0A8B7YVT3_ACAPL2.370e-2532.96Fanconi anemia group I protein-like n=1 Tax=Acanth... [more]
UPI00160220012.720e-2435.09Fanconi anemia group I protein-like n=1 Tax=Branch... [more]
UPI001CF1C3CC3.700e-2434.70Fanconi anemia group I protein-like isoform X1 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1664contigEcto-sp13_S_contig1664:581..2603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score430.6
Seed ortholog evalue5.2e-118
Seed eggNOG ortholog2880.D7FNN8
Preferred nameFANCI
Model size809
KEGG koko:K10895,ko:K16815
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007346,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010389,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0019222,GO:0019899,GO:0022402,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033554,GO:0034641,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070182,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903322
Exons3
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4553@1,KOG4553@2759
Ec32 ortholog descriptionFANCI helical domain 1
Ec32 orthologEc-01_004830.1
Cds size807
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.0439165-CDS-Ecto-sp13_S_contig1664:582..9031681462873.0439165-CDS-Ecto-sp13_S_contig1664:582..903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1664 583..903 -
1681462873.0565205-CDS-Ecto-sp13_S_contig1664:1437..16741681462873.0565205-CDS-Ecto-sp13_S_contig1664:1437..1674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1664 1438..1674 -
1681462873.0672781-CDS-Ecto-sp13_S_contig1664:2354..26031681462873.0672781-CDS-Ecto-sp13_S_contig1664:2354..2603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1664 2355..2603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1664.4758.1prot_Ecto-sp13_S_contig1664.4758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1664 583..2603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1664.4758.1

>prot_Ecto-sp13_S_contig1664.4758.1 ID=prot_Ecto-sp13_S_contig1664.4758.1|Name=mRNA_Ecto-sp13_S_contig1664.4758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRG
MLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTAR
SQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQA
VSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAP
AVGGRGGSSGGSNGGTQMSQTSQMSEGQQVAMALPFPLAAGGGGGGGGSA
LSLAEGFGLLRRCLTQQMV
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mRNA from alignment at Ecto-sp13_S_contig1664:581..2603-

Legend: polypeptideCDS
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>mRNA_Ecto-sp13_S_contig1664.4758.1 ID=mRNA_Ecto-sp13_S_contig1664.4758.1|Name=mRNA_Ecto-sp13_S_contig1664.4758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:581..2603- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTACTCTTGACGGTGGTCGCTTTCAGCAGGGGCTGGGACCACTTGGT CGACTCTCTTCTAAGGCTTGGGCTCAGGCTGCTCGACCGCGGCGGCGGAG CGGCGGCGGGCGTGTCGTCCTCCCCCGGAGCGGTCGGCGCGTCCAGGGGT ATGCTGGAGAAGCTCCAGGGGGCGCAGAGCCACCGGGCCACCCTGCGGGC TTCGTACCTAGGCCGCGTGGTGCTGATGGAAACATTCAAGACCCACGAGG TGAGGTTGGGTCTTCCCCTCAGACTGCTTCGTTTCTAGCCACTTTCACGC ACCTAAAATATATGCGTGTTGTTGGTTAACGCCTGTTCGGAGTTCCTTTT AGTGCTGAACACGCCAAGTCAAGTCTAGCGTTGGGTGCTCTGTTGGCGTT CTGTGTTTGGTGCGGGAAGGTTGTCCGTGAAGCTTGGGTCCAGTCTGTTC TCGGCCGCCTTTGTTGTTTCACGCTATTTTCTAGCAAAGTGCTTTCGATT TGTCGGCGAGTCACTGCAACTCATTCCGATGAAAGTGTTCCGCACGGAAC GGGGATTCTCTTGCCCCTTTTATTGGGGCACAACCCCGAAGCGAATTGGG TAACATTTTCATCAGCCACCCCTCTGTGCCCGGCGGTGGCGTCAAGCTGT CCGTTGGTTTTGGATTGTGGGAGAAGTCCTATTCGATTCTGTCATCTATA CAGGATAAATTCCGCGTCCGTCTCAACACGGTGACAAGGGGGAAAACATG GACTCGTCCTTCCTCGTCACCCACCTAGTTCCTCCTCCTCTTGTCACATT CAAGCACAACAGCAGCTGCAGTTCTGCTCATCCTTCGCTTGCGTGGGCGC TTTAGCTGTCATCCACAACATTTACCACTAGAGTATAACAACGCGTCATG AGTAACGACAACAGCGCGACTCGAAGCAGGTGGTTCGCGACCAGGTGCTG AGCGCGGTGCTGGAGCAAGTGACGGCTCGCTCGCAGGGGGTGCTAGGCTA CGTCAAGCTCCTGGGCCTGCTGGTGCAGCGCTACCCGAACCTCCTCCTCG GGAAGGCGGCGGCCGTGCAGGACGTGTTCGGGTACATCTCGGTGCTCCCG CCGACGGTCGCCGAGCGCTTTCTCCAGGCCGTCTCGCCCCTGATGCGACT GCGCCCTGGTCTTCAGGTATGACGTGCTGCTGTACACTACAATTGGAGGT GGACCTACAGGGCAACAACGTCTGTCGTTTTTCTCTGGCAGTTTTGTTTG CTATCTATCATACGTGTTTCTTCTTTTGAGTGTGTAAGAGCCCCGTTTTA TTTTGTTGCGGACGAGCTCGTCTCGTGCATCATCATGACGACTCTTCACG GTGATGCTTGAGGGTTTCCAAGGAGGGGGCCTTCGTCACCACGCGACTCC TATAGAGAATCTGGTACCGATCCACTCCTCCTCTACCTTGCACAACCAAG AAGGGAGCATTCGTCACCACGCGAGCTCCTATGGAAAGCTGGTCTCGATC CACTCCTCCCCTTCACAAGTTGTACAAGCCAACGGGAGGGCATTCGTTAC CACACAACAGAGCGCTCGTCTCGATCCACGCCTCTACATCGGTTGTAAGC TACAACCAACAGGCAGGGGGGCTTTGGTCAGTCACCACGCAGAGAAGCTC GTCTCGATCCACGCGTCCATATACGACGCTATTCTTGTACGAACCCGCAG GACTCGGTGGTCCTTCCTCTCCGAAAGGCCCTCTTCAGCCGCGAGGAACG CGCCCGCCTGGTCGCCGTCGGGGGCCTGGTGCTTCTCTTGAAGGATCAGA GCCGAAATGCGCCCGCCGTTGGGGGTCGCGGAGGTTCGAGCGGGGGTTCG AACGGGGGCACGCAGATGAGCCAGACGAGCCAGATGAGTGAGGGGCAGCA GGTGGCAATGGCTCTGCCGTTCCCGCTGGCGGCGGGCGGCGGCGGCGGCG GTGGCGGCTCTGCGTTGTCTCTCGCCGAAGGCTTCGGTCTCCTCAGGCGG TGCCTGACCCAGCAGATGGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1664:581..2603-

>mRNA_Ecto-sp13_S_contig1664.4758.1 ID=mRNA_Ecto-sp13_S_contig1664.4758.1|Name=mRNA_Ecto-sp13_S_contig1664.4758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:581..2603- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTACTCTTGACGGTGGTCGCTTTCAGCAGGGGCTGGGACCACTTGGT
CGACTCTCTTCTAAGGCTTGGGCTCAGGCTGCTCGACCGCGGCGGCGGAG
CGGCGGCGGGCGTGTCGTCCTCCCCCGGAGCGGTCGGCGCGTCCAGGGGT
ATGCTGGAGAAGCTCCAGGGGGCGCAGAGCCACCGGGCCACCCTGCGGGC
TTCGTACCTAGGCCGCGTGGTGCTGATGGAAACATTCAAGACCCACGAGG
TGGTTCGCGACCAGGTGCTGAGCGCGGTGCTGGAGCAAGTGACGGCTCGC
TCGCAGGGGGTGCTAGGCTACGTCAAGCTCCTGGGCCTGCTGGTGCAGCG
CTACCCGAACCTCCTCCTCGGGAAGGCGGCGGCCGTGCAGGACGTGTTCG
GGTACATCTCGGTGCTCCCGCCGACGGTCGCCGAGCGCTTTCTCCAGGCC
GTCTCGCCCCTGATGCGACTGCGCCCTGGTCTTCAGGACTCGGTGGTCCT
TCCTCTCCGAAAGGCCCTCTTCAGCCGCGAGGAACGCGCCCGCCTGGTCG
CCGTCGGGGGCCTGGTGCTTCTCTTGAAGGATCAGAGCCGAAATGCGCCC
GCCGTTGGGGGTCGCGGAGGTTCGAGCGGGGGTTCGAACGGGGGCACGCA
GATGAGCCAGACGAGCCAGATGAGTGAGGGGCAGCAGGTGGCAATGGCTC
TGCCGTTCCCGCTGGCGGCGGGCGGCGGCGGCGGCGGTGGCGGCTCTGCG
TTGTCTCTCGCCGAAGGCTTCGGTCTCCTCAGGCGGTGCCTGACCCAGCA
GATGGTG
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