mRNA_Ecto-sp13_S_contig16635.4755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16635.4755.1
Unique NamemRNA_Ecto-sp13_S_contig16635.4755.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16635.4755.1 vs. uniprot
Match: D8LD76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD76_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 4.030e-109
Identity = 245/339 (72.27%), Postives = 260/339 (76.70%), Query Frame = 1 
Query:    1 MLTDPDDGRGPSDGIIVADGDGGGSSGVRGGRVEGNSAPEGERSAVGVAADESEGLRQRDHRGLDAEEGRSDAEGSTSVYDQQPHKLKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------PQNPEAIQAVPGVIEAPSADLVSPRPETTS-TTTHERGGEEGVPAGTTERRTVGRDADPVAADGGGADPGQGRGTPVTRVDRDDEGAERGTNRIDGGVGGGEGVAGQESLAPGPSQEVVNRNGGGEGNGVPGDAREAVPPAAAADDSRSPDGVDDKQAAHGHDEPLATERAVVRFPSRQERYEG 963
            ML DP++GRGPSDGIIVADGDGGG SGVRGGRVEGN  PEGER AVGVA +ESEGL++RD RGLDAEEG +DAEGSTSVYDQQPHK KEEG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      P  PEAIQAV                     TTT++RGGEEGV AG TE +T   DADP AADGGGADP QGRGTPVTR DRD+EG ERGTN  DGGVGGGEGVA +ESL PGPSQEVV R GGGEGNG+PGDAREAVPPAAAA+D+R PDGVDDKQAA GHDEP ATERAVVRFPSR+   EG
Sbjct:    1 MLPDPNNGRGPSDGIIVADGDGGGGSGVRGGRVEGNGVPEGERLAVGVAVEESEGLKKRDQRGLDAEEGSTDAEGSTSVYDQQPHKQKEEGEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNKVEGKGWKGQEREAPLANAQPPTPEAIQAVXXXXXXXXXXXXXXXXXXXXXTTTNKRGGEEGVLAGETESQTGWGDADPAAADGGGADPEQGRGTPVTRADRDEEGVERGTNPNDGGVGGGEGVADEESLVPGPSQEVVTRGGGGEGNGLPGDAREAVPPAAAANDNRYPDGVDDKQAAPGHDEPSATERAVVRFPSREREEEG 339
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BLAST of mRNA_Ecto-sp13_S_contig16635.4755.1 vs. uniprot
Match: A0A6H5K564_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K564_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 1.880e-106
Identity = 236/310 (76.13%), Postives = 247/310 (79.68%), Query Frame = 1 
Query:    1 MLTDPDDGRGPSDGIIVADGDGGGSSGVRGGRVEGNSAPEGERSAVGVAADESEGLRQRDHRGLDAEEGRSDAEGSTSVYDQQPHKLKEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------PQNPEAIQAVPGVIEA-PSADLVSPRPETTSTTTHERGGEEGVPAGTTERRTVGRDADPVAADGGGADPGQGRGTPVTRVDRDDEGAERGTNRIDGGVGGGEGVAGQESLAPGPSQEVVNRNGGGEGNGVPGDAREAVPPAAAADDSRSPDGVDDKQAAHG 894
            MLTDPDDGRGPSDGII ADGDGGGSS VRG RVEGN APEGERSAVGVA DESEGL Q +H GLDAEEGRSDAEGSTSVYDQQ HK ++E    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       P N EAIQAVPGVIEA PSAD VSPRP+ TSTTT +R GEEG PAG  + RT   DADP AADGGGADP QGRGTPVTR DRD+EGAE GTNR DGGVG GEGVAGQESL PGPSQE+VNR+GGGEG GVPGDAREAVP AA A+D+RSPDGVDDKQA  G
Sbjct:  219 MLTDPDDGRGPSDGIIGADGDGGGSSEVRGRRVEGNGAPEGERSAVGVAVDESEGLTQPEHLGLDAEEGRSDAEGSTSVYDQQAHKQRDEDNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGDRQGKGGERQEGEAPLANAQPSNSEAIQAVPGVIEAEPSADSVSPRPDATSTTTKKRRGEEGAPAGAMDSRTGWGDADPAAADGGGADPEQGRGTPVTRADRDEEGAEGGTNRNDGGVGRGEGVAGQESLLPGPSQEIVNRSGGGEGTGVPGDAREAVPLAAPANDNRSPDGVDDKQARGG 528
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16635.4755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD76_ECTSI4.030e-10972.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K564_9PHAE1.880e-10676.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16635contigEcto-sp13_S_contig16635:407..1733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size963
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001490.1
Cds size963
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462872.7956345-CDS-Ecto-sp13_S_contig16635:406..4871681462872.7956345-CDS-Ecto-sp13_S_contig16635:406..487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16635 407..487 -
1681462872.80656-CDS-Ecto-sp13_S_contig16635:851..17331681462872.80656-CDS-Ecto-sp13_S_contig16635:851..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16635 852..1733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16635.4755.1prot_Ecto-sp13_S_contig16635.4755.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16635 407..1733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16635.4755.1

>prot_Ecto-sp13_S_contig16635.4755.1 ID=prot_Ecto-sp13_S_contig16635.4755.1|Name=mRNA_Ecto-sp13_S_contig16635.4755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
MLTDPDDGRGPSDGIIVADGDGGGSSGVRGGRVEGNSAPEGERSAVGVAA
DESEGLRQRDHRGLDAEEGRSDAEGSTSVYDQQPHKLKEEGEEGEEEEEE
EEEEGDKGERGDAGENKGDREGEAGERQEREAPLANLQPQNPEAIQAVPG
VIEAPSADLVSPRPETTSTTTHERGGEEGVPAGTTERRTVGRDADPVAAD
GGGADPGQGRGTPVTRVDRDDEGAERGTNRIDGGVGGGEGVAGQESLAPG
PSQEVVNRNGGGEGNGVPGDAREAVPPAAAADDSRSPDGVDDKQAAHGHD
EPLATERAVVRFPSRQERYEG
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mRNA from alignment at Ecto-sp13_S_contig16635:407..1733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16635.4755.1 ID=mRNA_Ecto-sp13_S_contig16635.4755.1|Name=mRNA_Ecto-sp13_S_contig16635.4755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16635:407..1733- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGACTGACCCCGATGATGGAAGGGGACCATCCGACGGGATCATCGT
TGCTGATGGTGATGGCGGTGGTAGCAGCGGAGTTCGTGGGGGGCGGGTAG
AGGGCAACAGCGCGCCGGAAGGCGAGCGCTCGGCTGTGGGAGTCGCTGCG
GACGAGAGCGAGGGACTGAGGCAGCGCGACCATCGAGGACTCGATGCCGA
GGAAGGCAGAAGCGACGCCGAAGGTTCCACGTCGGTGTACGACCAGCAGC
CGCACAAGCTGAAAGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGGGGACAAGGGCGAACGGGGCGACGCAGGAGAGAACAA
GGGGGACAGAGAGGGTGAGGCGGGAGAACGACAAGAAAGGGAGGCCCCTC
TCGCCAACTTACAGCCGCAGAACCCGGAGGCCATCCAGGCGGTTCCGGGT
GTCATCGAGGCCCCGTCGGCAGACTTGGTATCACCCCGGCCGGAAACCAC
CAGCACTACCACTCATGAACGCGGCGGAGAGGAAGGGGTCCCCGCAGGCA
CGACAGAACGCCGAACCGTGGGGAGGGACGCCGACCCCGTGGCAGCCGAT
GGTGGTGGCGCGGACCCTGGACAGGGACGCGGGACGCCCGTGACGCGAGT
GGATCGTGACGACGAAGGGGCGGAGAGAGGGACAAACCGAATAGATGGAG
GCGTAGGTGGGGGGGAGGGGGTGGCCGGTCAGGAGTCTCTGGCGCCCGGA
CCGAGCCAAGAGGTCGTCAACCGCAATGGAGGCGGCGAAGGAAACGGAGT
CCCAGGAGACGCCAGGGAGGCAGTGCCTCCTGCTGCGGCCGCCGACGACA
GTCGCTCCCCGGACGGCGTCGACGACAAGCAGGTTGGGAATCGTTCACGT
CTTCCAGACACTTTTTGAGAGGCTCGACGTTTTTTCATTTGCTGCTCTCT
CTTGGTACAGGAAATCGGGGAAGATTAAAGCGCAAAGCGTGTGGCTCCCG
TCCCGAGAACGAGCCGAGGCACGTCCATAACCCATCACTAAGACATAATT
ATTCATGTCAGCATCCATTACCCCATTTCTTGCAGTATTCGCCGCTTTGA
ATTCGAGCGAGAGTAATAATTGTGCTTGTCGAGTTCCGTTGTTGCGAACC
GGCAACAGCCTATCCAATCCGCAGTCAACCGACAAGCGGCAACGACCTTG
TGCGCTCTTCTCCTCTCTTTTGTCCCTTCCGACCCGAACCGGCCAGGCTG
CACATGGGCATGATGAACCGTTGGCCACAGAGCGCGCGGTCGTCCGATTT
CCATCAAGGCAAGAACGATATGAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16635:407..1733-

>mRNA_Ecto-sp13_S_contig16635.4755.1 ID=mRNA_Ecto-sp13_S_contig16635.4755.1|Name=mRNA_Ecto-sp13_S_contig16635.4755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16635:407..1733- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGACTGACCCCGATGATGGAAGGGGACCATCCGACGGGATCATCGT
TGCTGATGGTGATGGCGGTGGTAGCAGCGGAGTTCGTGGGGGGCGGGTAG
AGGGCAACAGCGCGCCGGAAGGCGAGCGCTCGGCTGTGGGAGTCGCTGCG
GACGAGAGCGAGGGACTGAGGCAGCGCGACCATCGAGGACTCGATGCCGA
GGAAGGCAGAAGCGACGCCGAAGGTTCCACGTCGGTGTACGACCAGCAGC
CGCACAAGCTGAAAGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGGGGACAAGGGCGAACGGGGCGACGCAGGAGAGAACAA
GGGGGACAGAGAGGGTGAGGCGGGAGAACGACAAGAAAGGGAGGCCCCTC
TCGCCAACTTACAGCCGCAGAACCCGGAGGCCATCCAGGCGGTTCCGGGT
GTCATCGAGGCCCCGTCGGCAGACTTGGTATCACCCCGGCCGGAAACCAC
CAGCACTACCACTCATGAACGCGGCGGAGAGGAAGGGGTCCCCGCAGGCA
CGACAGAACGCCGAACCGTGGGGAGGGACGCCGACCCCGTGGCAGCCGAT
GGTGGTGGCGCGGACCCTGGACAGGGACGCGGGACGCCCGTGACGCGAGT
GGATCGTGACGACGAAGGGGCGGAGAGAGGGACAAACCGAATAGATGGAG
GCGTAGGTGGGGGGGAGGGGGTGGCCGGTCAGGAGTCTCTGGCGCCCGGA
CCGAGCCAAGAGGTCGTCAACCGCAATGGAGGCGGCGAAGGAAACGGAGT
CCCAGGAGACGCCAGGGAGGCAGTGCCTCCTGCTGCGGCCGCCGACGACA
GTCGCTCCCCGGACGGCGTCGACGACAAGCAGGCTGCACATGGGCATGAT
GAACCGTTGGCCACAGAGCGCGCGGTCGTCCGATTTCCATCAAGGCAAGA
ACGATATGAGGGG
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