prot_Ecto-sp13_S_contig16609.4741.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16609.4741.1
Unique Nameprot_Ecto-sp13_S_contig16609.4741.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length67
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16609.4741.1 vs. uniprot
Match: D7FHD7_ECTSI (Indole-3-glycerol-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD7_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 6.730e-37
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 
Query:    1 AGFIDGILSPELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQENSRGDFPGPMPVIIRYI 66
            +GFIDGIL+PELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQENSRGDFPGPMPVIIR +
Sbjct:   76 SGFIDGILAPELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQENSRGDFPGPMPVIIRDL 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16609.4741.1 vs. uniprot
Match: K0S3T1_THAOC (Indole-3-glycerol-phosphate synthase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3T1_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-14
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0 
Query:    1 AGFIDGILSPELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQENSRGDFPGPMPVI 62
            +GF+  IL PE+L P+ R  GAA +AV  +   GGC+  D+K +VEEQE +RGD PGP+PVI
Sbjct:  128 SGFVTDILQPEILSPVFREFGAAAVAVLADERMGGCTYDDVKAMVEEQEEARGDVPGPLPVI 189
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16609.4741.1 vs. uniprot
Match: A0A7S0GKM6_9STRA (Indole-3-glycerol-phosphate synthase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.920e-12
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:    1 AGFIDGILSPELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQENSRGDFPGPMPVI 62
            AGFID IL P ++    R  GA+ ++V  +   GGC+  D+K +V+EQ NS+G+ PGP+PVI
Sbjct:  123 AGFIDEILEPNIISSTFREFGASAVSVLADERVGGCTYDDIKIIVKEQSNSKGEVPGPLPVI 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16609.4741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHD7_ECTSI6.730e-3793.94Indole-3-glycerol-phosphate synthase n=2 Tax=Ectoc... [more]
K0S3T1_THAOC1.300e-1453.23Indole-3-glycerol-phosphate synthase (Fragment) n=... [more]
A0A7S0GKM6_9STRA2.920e-1246.77Indole-3-glycerol-phosphate synthase n=1 Tax=Probo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16609contigEcto-sp13_S_contig16609:835..2092 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16609.4741.1mRNA_Ecto-sp13_S_contig16609.4741.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16609 835..3862 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16609.4741.1 ID=prot_Ecto-sp13_S_contig16609.4741.1|Name=mRNA_Ecto-sp13_S_contig16609.4741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
AGFIDGILSPELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQEN
SRGDFPGPMPVIIRYI*
back to top