mRNA_Ecto-sp13_S_contig1658.4727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1658.4727.1
Unique NamemRNA_Ecto-sp13_S_contig1658.4727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1658.4727.1 vs. uniprot
Match: D7FST8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.650e-12
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   58 KSMNISVDSCPGAFGADLICSSVNKSLLRMSHSRFYLLWPTTA 186
            K    SVD CPGAFGA+LICSSV+K L  MSH RF+L WPTTA
Sbjct:   20 KEYEFSVDFCPGAFGANLICSSVHKPLFCMSHFRFHLFWPTTA 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1658.4727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FST8_ECTSI1.650e-1269.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1658contigEcto-sp13_S_contig1658:13183..13368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size187
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001610.1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.8107016-CDS-Ecto-sp13_S_contig1658:13182..133681681462870.8107016-CDS-Ecto-sp13_S_contig1658:13182..13368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1658 13183..13368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1658.4727.1prot_Ecto-sp13_S_contig1658.4727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1658 13183..13368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1658.4727.1

>prot_Ecto-sp13_S_contig1658.4727.1 ID=prot_Ecto-sp13_S_contig1658.4727.1|Name=mRNA_Ecto-sp13_S_contig1658.4727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
CQVSSTAFSACIRQPNNGLKSMNISVDSCPGAFGADLICSSVNKSLLRMS
HSRFYLLWPTTA
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mRNA from alignment at Ecto-sp13_S_contig1658:13183..13368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1658.4727.1 ID=mRNA_Ecto-sp13_S_contig1658.4727.1|Name=mRNA_Ecto-sp13_S_contig1658.4727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1658:13183..13368- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCAAGTATCGTCAACGGCCTTTTCAGCGTGTATCCGACAGCCGAACAA
CGGCCTGAAGAGTATGAATATCTCGGTAGATTCATGTCCAGGCGCATTCG
GTGCTGATCTTATTTGTTCCAGTGTAAACAAGTCACTCCTTCGCATGTCT
CATTCTCGATTTTATTTGCTTTGGCCCACAACTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1658:13183..13368-

>mRNA_Ecto-sp13_S_contig1658.4727.1 ID=mRNA_Ecto-sp13_S_contig1658.4727.1|Name=mRNA_Ecto-sp13_S_contig1658.4727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1658:13183..13368- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCAAGTATCGTCAACGGCCTTTTCAGCGTGTATCCGACAGCCGAACAA
CGGCCTGAAGAGTATGAATATCTCGGTAGATTCATGTCCAGGCGCATTCG
GTGCTGATCTTATTTGTTCCAGTGTAAACAAGTCACTCCTTCGCATGTCT
CATTCTCGATTTTATTTGCTTTGGCCCACAACTGCG
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