mRNA_Ecto-sp13_S_contig16556.4711.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16556.4711.1
Unique NamemRNA_Ecto-sp13_S_contig16556.4711.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 674 bits (1738), Expect = 1.860e-236
Identity = 372/471 (78.98%), Postives = 375/471 (79.62%), Query Frame = 1
Query:    1 QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVGGSAAATAAAVGGGVLSRRTQPRLTGTWAGPLLWPNEVNQVPAEAFVRLTQGREAELEYLATRNGSSXXXXXXXXXXXXXXXRANEGGGDGLAGSGETNGSAGG-AHVQQPLRFESQQFSLLRLESDKFSEKFSDGKGSPRRXXXXXXXXXXXXXXXXXXXGAPQAPPDTAEPSLLQDGRNAAGTPTSTQSPPPP-TLPGWDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 1407
            QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAV  SAA       GGVLSRR QPRLTGTWAGPLLWPNEVNQ  + +                                     RA EGGGD LAGSGETNGSAGG AHVQQPLRFESQQFSLLRLESD    KFSDG   PR                    GAPQAPP+TAEPSLLQDGRNAAGT  STQSPPPP TLPGWDGPL PEDGDAVLIADGFLVPGKADGGVYLVVP AAEE  A    G  GVDGAARGGESRAEGKAGAGAAAAAG  PPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVD PLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR
Sbjct:  112 QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVSRSAAXXXXXXXGGVLSRRMQPRLTGTWAGPLLWPNEVNQDISAS-------------------------------------RAKEGGGDSLAGSGETNGSAGGGAHVQQPLRFESQQFSLLRLESD----KFSDGDRPPRLRRETEAAALPLPVTGAGAGGAPQAPPNTAEPSLLQDGRNAAGTSASTQSPPPPPTLPGWDGPLPPEDGDAVLIADGFLVPGKADGGVYLVVPAAAEERRATAAAG-LGVDGAARGGESRAEGKAGAGAAAAAGSIPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDSPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 540          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 689 bits (1779), Expect = 5.740e-236
Identity = 404/493 (81.95%), Postives = 412/493 (83.57%), Query Frame = 1
Query:    1 QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVGGSAAATAAAVGGG-VLSRRTQPRLTGTWAGPLLWPNEVNQVPAE-----AFVRLT----------------QGREAELEYLATRNGSSXXXXXXXXXXXXXXX--RANEGGGDGLAGSGETNGSAGGAHVQQPLRFESQQFSLLRLESDKFSEKFSDGKGSPRRXXXXXXXXXXXXXXXXXXXGAPQAPPDTAEPSLLQDGRNAAGTPTSTQSPPPPTLPGWDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 1407
            QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPR+FARLEGAVGGS            VLSRRTQPRLTGTWAGPLLWPNEVNQV A      + VR                  +GREAEL+YLATRNGSSXXXXXXX          RANEGG DGLAGSGETNG+AGGAHVQQPLRFESQQFSLLRLESD    KFSDG  SPR+    XXXXXXXXXXXXXX GAPQ PP TAEPSLLQDGRNAAGT  ST+SP P TLPGWDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVP AAEE      G   GVDGAARG ESRA GKAGAGAAAA G SP ED+IVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR
Sbjct:  397 QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRMFARLEGAVGGSXXXXXXXXXXXXVLSRRTQPRLTGTWAGPLLWPNEVNQVGAAGCLAWSLVRWVTAGRASGRGGPLSVEGRGREAELKYLATRNGSSXXXXXXXGRQRQDSSTSRANEGGSDGLAGSGETNGNAGGAHVQQPLRFESQQFSLLRLESD----KFSDGDCSPRKRRETXXXXXXXXXXXXXXGGAPQVPPGTAEPSLLQDGRNAAGTSASTESP-PTTLPGWDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPAAAEERXXXXXG--VGVDGAARGRESRAGGKAGAGAAAAVGSSPTEDKIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 882          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 199 bits (507), Expect = 4.560e-55
Identity = 112/222 (50.45%), Postives = 133/222 (59.91%), Query Frame = 1
Query:  739 WDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADL 1404
            W+G   P D  A+L+ADGFL+PGK DGGVYLV+P                        E R EG    G AA       E   VR++  K+GWFYHKAVWV +P G++ VL AR  KP+FG   GELVL +MP V  PL+   LPWRE VL  GPDVMF +VDLD  D TV+V  AEFF  R+TMHS+  G    G+Q  V +SWVLD N GPAYS+ AADL
Sbjct:    9 WEG--APADA-ALLVADGFLMPGKTDGGVYLVLPR-----------------------ERRGEG----GGAA-------ESDFVRVSGIKKGWFYHKAVWVNMPDGRRGVLAARATKPLFGGGRGELVLFDMPSVAQPLAAYALPWRETVLANGPDVMFHLVDLDDADGTVEVFAAEFFARRLTMHSVRWGDARRGTQSQVVQSWVLDSNCGPAYSVVAADL 193          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A4D9DCX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCX2_9STRA)

HSP 1 Score: 167 bits (423), Expect = 4.730e-41
Identity = 91/215 (42.33%), Postives = 115/215 (53.49%), Query Frame = 1
Query:  769 DAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVL--PGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 1407
            +A+L+ADGFL+PG++DGG+Y+V  P                                             +R+  LT  + GWFYHKA WV L  PGG+  +LTAR  KP F Q EGELVLL  P    PL+E N PW+E VL  GPDVMF+V DLD  D  ++V  +EFF  R+++H +  G    G  P V  S VLDD  GPAYS+  ADLR
Sbjct:  506 EALLVADGFLMPGRSDGGLYVVQQPGTSL-----------------------------------------ERVTSLTRHRPGWFYHKATWVDLLGPGGRPCLLTARATKPFFAQTEGELVLLLQPEGPFPLAEWNTPWQEVVLAKGPDVMFDVADLDPTDDVLEVFASEFFSRRLSLHRIIKGDWRTGRLPRVLTSEVLDDALGPAYSVVLADLR 679          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A7S4DAE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE7_HETAK)

HSP 1 Score: 163 bits (412), Expect = 3.220e-40
Identity = 92/219 (42.01%), Postives = 121/219 (55.25%), Query Frame = 1
Query:  769 DAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVL-PGGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSL-----WGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 1407
            +A+L+ADGFL+PGK DG VYLV  P                                           P +R +RLT P  G+FYHKAVWV L   G+K +LTAR  KP+ GQAEGELV  E P V  PL+    PW+E V+ TGPDVMFEV+D+D +D +++++ AEFF  R+T+ SL     W    L  ++  V +  V+D   GPAY +TAA+LR
Sbjct:  172 EALLVADGFLMPGKNDGAVYLVASPGG-----------------------------------------PGERRLRLTAPAPGFFYHKAVWVDLFQTGQKGILTARAKKPLLGQAEGELVFFEQPLVRDPLASFCTPWKETVITTGPDVMFEVIDIDPDDDSIEIVAAEFFNERLTLTSLAPRRDW----LGPNKIQVKQKMVIDAGCGPAYGVTAANLR 345          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: L1JIM1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JIM1_GUITC)

HSP 1 Score: 150 bits (378), Expect = 2.950e-35
Identity = 92/218 (42.20%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  763 DGDAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPI--FGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSL-WGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 1407
            D   +L+ADGFLVPGK DG V +V  P                                           P +   RLT  K+ WFYH+AV +   G  + VLTAR  KPI  F +AEGELV LE P   +P +E NLPWRE +L  GPDVMFEVVDLD ED TV+V+ AEFF  R++  SL W         P V ++ ++DD  G AYS+ AADL 
Sbjct:  236 DEACILVADGFLVPGKNDGSVTIVKDPGG-----------------------------------------PNEVAYRLTESKKSWFYHRAVPLHF-GSARGVLTARARKPILPFQEAEGELVWLEQPDTVNPFAEWNLPWREVILAEGPDVMFEVVDLDPEDDTVEVVAAEFFRQRLSFFSLRW---DETCKSPKVVQTELIDDKLGQAYSVVAADLE 408          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A7S1G010_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G010_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.760e-27
Identity = 89/247 (36.03%), Postives = 122/247 (49.39%), Query Frame = 1
Query:  769 DAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAG----AGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPG-GKKVVLTARVHKPIFGQAE-------------GELVLLEMPRVDH-----------------PLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADL 1404
            DA+L+ADGFLVPG+ DGG+Y+V  P        GG G  G + A R       GK      +   + A R    D +    + +  WFYHKAVW+ L G G+  +LTAR  +P    ++             G+LV LE PR  H                 P   +++PW+E++L  GPDVMF V DLD  D T+ +I A+FFG +VT HSL       G +P V    V+DD+ G +Y I   +L
Sbjct:  137 DALLVADGFLVPGRDDGGIYVVRHP--------GGAGPLGRERAVRLSPGWDGGKGSRRMRSTVQSLARRLGGIDPVAEEDDAR--WFYHKAVWIDLTGDGRWSILTARARRPDISFSDDGIPQEDPAVLPSGQLVWLERPRPHHRDKLTGELRDEDGTLFDPFGPRHVPWKERILDEGPDVMFAVADLDPTDDTIDIIAAQFFGKKVTCHSL-----RRGPRPEVISRHVIDDDCGASYGILLVNL 368          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A7S1DNQ2_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DNQ2_HEMAN)

HSP 1 Score: 120 bits (302), Expect = 5.010e-26
Identity = 83/225 (36.89%), Postives = 104/225 (46.22%), Query Frame = 1
Query:  739 WDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPGGKKVVLTARVHKPI--FGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHS-LWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADL 1404
            W+G     D   +L+ADGFLVPGK  GGV+ V  P  +                                          + +V LT  +   FYHKAV   + G + V LTAR   P+  + +  GELV LE P    P +  + PWRE VL  GPDVMF+V DLD  D+TVQV  AEFF  R+TM S LW        +P V +  VLD   G AYS+    L
Sbjct:  161 WEG----LDKPGMLVADGFLVPGKTKGGVHFVTEPGTDR-----------------------------------------EEVVTLTEGRSKHFYHKAVPCSIDGHEGV-LTARARLPLVPWMKGVGELVWLEKPDTLQPTAPWSTPWREIVLAEGPDVMFDVADLDEGDTTVQVFAAEFFARRLTMFSILW---DADAGRPRVVQREVLDSQLGQAYSVQVLSL 336          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A7S3V9N2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9N2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.790e-25
Identity = 85/247 (34.41%), Postives = 120/247 (48.58%), Query Frame = 1
Query:  769 DAVLIADGFLVPGKADGGVYLVVPPAAEES---CARGGGGDFGVDGAARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLPG-GKKVVLTARVHKPIF--------------GQAEGELVLLEMP---RVDH--------------PLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADL 1404
            DA+L++DGFLVPG+ +GG+Y+V  P   E    C  GG G   VDG     ES   G                      T  + GWFYH+++W+ L G G++ VLTAR  +P                 + + +LV LE P   R+D               P S ++ PW+  VL  GPDVMF V D+D  D T++V  ++FF  ++TMHS+       G +P V  S +LDD  G ++S T A+L
Sbjct:  389 DALLVSDGFLVPGRDNGGIYVVSKPGHSEERKICLTGGNG---VDGLLSKLESGEIG----------------------TGSENGWFYHRSIWIDLTGDGRQSVLTARAKRPPIIKKTEETDNVDSCSPETDSQLVWLERPMPHRIDESTGTPLDRDGLVFDPFSPKHTPWKVGVLDCGPDVMFSVADMDCTDDTIEVFASQFFSKKLTMHSI-----RRGLKPEVVFSRILDDRCGASFSSTLANL 605          
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Match: A0A7S0PKA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PKA3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.900e-23
Identity = 62/166 (37.35%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  976 EDRIVRLTNPKRGWFYHKAVWVVLPG-GKKVVLTARVHKPIFGQA----EGELVLLEMPR-----------------VDHPLSEQNLPWREKVLVTGPDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTESWVLDDNAGPAYSITAADLR 1407
            E ++    N + GW+YH+AVW+ L   G++ VL AR   PI G+      GELV +E PR                 V  P   ++LPW+  +L  GPDVMF V DLD +D++V++I ++FFG +VT+HS+       G  P V    V+DD  G ++S   +DLR
Sbjct:   11 EWKVCICGNDETGWYYHRAVWIDLTNDGRQSVLAARARSPIPGRPLEENVGELVFIERPRPYRYDEETGTPLDVDGTVFDPFGPRHLPWKTTILDEGPDVMFCVADLDEKDNSVEIIASQFFGKKVTLHSV-----ERGLNPRVNFRRVIDDRCGSSFSAILSDLR 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16556.4711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTN5_ECTSI1.860e-23678.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ55_9PHAE5.740e-23681.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJ47_9STRA4.560e-5550.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DCX2_9STRA4.730e-4142.33Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4DAE7_HETAK3.220e-4042.01Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1JIM1_GUITC2.950e-3542.20Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1G010_9STRA1.760e-2736.03Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1DNQ2_HEMAN5.010e-2636.89Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S3V9N2_9STRA1.790e-2534.41Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0PKA3_9STRA2.900e-2337.35Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16556contigEcto-sp13_S_contig16556:217..3396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score152.5
Seed ortholog evalue4.8e-34
Seed eggNOG ortholog55529.EKX48363
Model size1410
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001610.1
Cds size1410
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.5594738-CDS-Ecto-sp13_S_contig16556:216..4081681462869.5594738-CDS-Ecto-sp13_S_contig16556:216..408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16556 217..408 -
1681462869.5704248-CDS-Ecto-sp13_S_contig16556:883..9611681462869.5704248-CDS-Ecto-sp13_S_contig16556:883..961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16556 884..961 -
1681462869.580119-CDS-Ecto-sp13_S_contig16556:1301..14311681462869.580119-CDS-Ecto-sp13_S_contig16556:1301..1431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16556 1302..1431 -
1681462869.588955-CDS-Ecto-sp13_S_contig16556:2098..28441681462869.588955-CDS-Ecto-sp13_S_contig16556:2098..2844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16556 2099..2844 -
1681462869.6028655-CDS-Ecto-sp13_S_contig16556:3132..33961681462869.6028655-CDS-Ecto-sp13_S_contig16556:3132..3396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16556 3133..3396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16556.4711.1prot_Ecto-sp13_S_contig16556.4711.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16556 217..3396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16556.4711.1

>prot_Ecto-sp13_S_contig16556.4711.1 ID=prot_Ecto-sp13_S_contig16556.4711.1|Name=mRNA_Ecto-sp13_S_contig16556.4711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=470bp
QVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVGG
SAAATAAAVGGGVLSRRTQPRLTGTWAGPLLWPNEVNQVPAEAFVRLTQG
REAELEYLATRNGSSSSSSSMKQRQDSSTSRANEGGGDGLAGSGETNGSA
GGAHVQQPLRFESQQFSLLRLESDKFSEKFSDGKGSPRRRRETEAAALPL
PVTGAGAGGAPQAPPDTAEPSLLQDGRNAAGTPTSTQSPPPPTLPGWDGP
LLPEDGDAVLIADGFLVPGKADGGVYLVVPPAAEESCARGGGGDFGVDGA
ARGGESRAEGKAGAGAAAAAGRSPPEDRIVRLTNPKRGWFYHKAVWVVLP
GGKKVVLTARVHKPIFGQAEGELVLLEMPRVDHPLSEQNLPWREKVLVTG
PDVMFEVVDLDREDSTVQVICAEFFGGRVTMHSLWGGGQLPGSQPSVTES
WVLDDNAGPAYSITAADLR*
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mRNA from alignment at Ecto-sp13_S_contig16556:217..3396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16556.4711.1 ID=mRNA_Ecto-sp13_S_contig16556.4711.1|Name=mRNA_Ecto-sp13_S_contig16556.4711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16556:217..3396- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTACAGGAGGGTCGAAACGGTAGGTCCGACACCCTCCTCGTGTCCCA GTTCGGCTTCACCCGCGGCGGAGCTGTGTCACGAGTGGACCTCGACCCAC CGCCGCAATTGCCCCGCATTTTTGCGAGACTGGAGGGAGCAGTTGGCGGG AGCGCTGCAGCGACGGCGGCGGCGGTTGGGGGGGGGGTGTTGTCGCGTCG CACGCAACCGAGACTCACGGGGACGTGGGCGGGTCCCCTGCTTTGGCCGA ACGAGGTTAACCAGGTTGGTGCTGCGGGCTGTTTGGCGTGGAGCCCTGTA CGGTCGGTCGAGCAACCGGCGGGGGTGGGCCTTTGTCCGTTGAGGAAAGG GTTCGATTTTCTCTTTTGGAAACATAAATCGCAGAAAGAGGATGTGGTTA AGCAGTTACAGTAGCGTCTTTATTGTCGCAGTTTGTTTTCCTGTCGAGTT GTGGGTTGTTGTGTAGTGTCGTCGTCGAAGCGTTTCGGAGCGCCCTTCTC TTTATTCCCTCCTTTCCGCATCGTCGTGCTGCCGTGCTGCTATCTCCACC AGGTACCCGCCGAAGCTTTTGTCCGGTTGACGCAGGGCAGAGAAGCAGAG TTAGAGTACCTGGCGACACGAAACGGCAGCAGCAGCAGCAGCAGCAGCAT GAAGCAACGGCAGGACAGCTCAACATCGAGGGCGAACGAAGGCGGAGGCG ACGGCCTTGCGGGCAGCGGCGAAACGAACGGGAGCGCGGGAGGCGCCCAC GTTCAGCAGCCCCTGCGCTTCGAGAGCCAGCAGTTTAGCCTCCTTCGCCT CGAGAGCGACAAGTTCAGCGAAAAGTTCAGCGACGGCAAGGGCTCTCCCC GCAGGAGGCGAGAAACGGAGGCGGCGGCGCTACCGCTGCCGGTGACGGGA GCGGGAGCGGGAGGAGCGCCGCAGGCGCCCCCGGACACGGCGGAGCCCTC GCTGCTGCAAGATGGACGCAACGCCGCCGGCACGCCTACTTCGACGCAGT CGCCGCCGCCGCCGACGTTGCCGGGGTGGGACGGCCCGCTGCTGCCCGAG GACGGGGATGCGGTGCTCATCGCCGACGGGTTCCTGGTGCCCGGTAAGGC GGACGGGGGGGTGTACCTCGTCGTCCCCCCGGCGGCGGAGGAATCGTGTG CCCGCGGCGGCGGCGGCGACTTTGGGGTCGATGGCGCTGCCCGTGGCGGG GAGTCTCGAGCAGAAGGCAAGGCCGGGGCTGGTGCCGCTGCTGCTGCGGG TAGAAGCCCCCCGGAGGATAGGATTGTGCGACTGACGAACCCGAAGAGGT GAGGCGGGGGAGGTATCCTGACTACGCGTGAGATGGCTACGCGTAAGAGG TGTGGGGGTAGAAGGGGAAGGGTGGTACGGTTGGGGCTGAGTGCACTGCT GGTTGCGGTGTGCGGCATTGGTTTGTTCGTGGGTTGATTCTTGAAGGCGA GCAGGAAGCCGGGATCGGCAAAAGCCACGCCAAGAAACGTCATATGCGGT TGTGGTATGTACACCGCCAAGCCGACTGTGGCATGTGGTCAATGTGTTCA GCTTGTTTGACCTCCTGTTTATTCTCGTCAGCACCCTCATCGATTGCCCT GGATGTTCTTTGTGAAACCGCGCGCTCACTCGGCCTCGGCCACCGTGGCC TGATGCGTTTGTAGGTGTCACCGATCTCTAATTCCTATGTCGGTACGTAC CTACGGTCTCCCTCTGTTGCAATTGGAGGACTAGTCGGGTCCGACGCTCA GCGTCTTTGTATCGCCCTAACAACCCTCTCCGTGCTCGGTGCTCCTTGAC CGCACCCGCGTCGAAATGTTTCAAACTTTTTGCACGCTCCGTCCGCCGAG TTTGTCTATTGGCTCTCTTGAACCCTGCGCTCTTCCCCTGCTCGCCCCCG TTGCTTGCGCGACGCCCTCGCGTGCCTGTCCAACCAACCCCAACCAACCA ATCAACCGAAAAAAGGGGCTGGTTCTACCACAAGGCGGTGTGGGTTGTCC TCCCGGGGGGAAAGAAGGTGGTGCTTACGGCGAGGGTGCACAAGCCCATC TTCGGGCAGGCGGAGGGCGAGCTCGTGCTCCTGGAGATGCCTCGAGTAAG CATCAGCAAGACGAAAGAGAGCGCGGGGGTGTGGGAGACAAACATGCACA GAGAGAGACAGAGAGAGACAGAGAGAGGAGCTATCTCGACGCAGCGTGTT GCGACTGTACATGGCAGCCCCCCCCCCCCACCGCGCGCCCGCAGAGAAGC GCACCATTACCCGCCGACACTGACGTCTGGTAACAGTTGGACAGCCGTCT CTGATGGCGCCGCCCATGCATCTCTAACGAAGCACCTACGTCATGGCTAC ACCCACTGGCGAACAACGAAACAAGCCAATTTCTGTTTGTCCGCGGTCTC GTTGTTTTTTTTTTCATGGTTATTGTTGTGTACAGGTGGACCACCCGTTG TCGGAGCAGAACCTGCCCTGGAGAGAGAAAGTGCTGGTGACGGGGCCAGA TGTTATGTTCGAGGTGAGGCGTGAAGTGTGAGTATGTGATATACTCCTAG GAAGTAGGCATCCCCCGACACGGGCGTCGCGGTTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCT CTCTCGATTTTTTGCTTTCGCGAAAAGGAGCGTAGTTGCTCGGTTTGGTC GAGATCGCCCCACCGTTTCAAACAGGTGTAGTTCCTGTACTTCGTTCTTT TCTTTTCTGGTAGTTTGTTGAGTTGTCGACTGTTGGATGGTTTCCACCAT GGGGTGCCTGCCACGCCTCAATTGCTCGAATCCATTTCATCGAGCGGGTG TGCACGCGAACACACGTGGTGGAAAGTTCTCGTCTCAAGAACGTAAACCG CCTACTACTTGTTCCTCCGCTCGCCCCCCTCCACGCCCCCCCCTCCACCG ATCCTTTTCCTTTTTGGATCCAACCCTTGCCCTGGAAGGTGGTTGACTTA GATCGAGAGGATAGCACGGTCCAGGTCATCTGCGCCGAGTTTTTCGGGGG CAGGGTCACCATGCACAGCCTCTGGGGCGGCGGCCAGCTGCCCGGCAGCC AGCCTTCGGTGACGGAGTCTTGGGTGCTCGACGACAACGCGGGGCCGGCG TACTCGATCACTGCCGCTGACTTGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16556:217..3396-

>mRNA_Ecto-sp13_S_contig16556.4711.1 ID=mRNA_Ecto-sp13_S_contig16556.4711.1|Name=mRNA_Ecto-sp13_S_contig16556.4711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1410bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16556:217..3396- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTACAGGAGGGTCGAAACGGTAGGTCCGACACCCTCCTCGTGTCCCA
GTTCGGCTTCACCCGCGGCGGAGCTGTGTCACGAGTGGACCTCGACCCAC
CGCCGCAATTGCCCCGCATTTTTGCGAGACTGGAGGGAGCAGTTGGCGGG
AGCGCTGCAGCGACGGCGGCGGCGGTTGGGGGGGGGGTGTTGTCGCGTCG
CACGCAACCGAGACTCACGGGGACGTGGGCGGGTCCCCTGCTTTGGCCGA
ACGAGGTTAACCAGGTACCCGCCGAAGCTTTTGTCCGGTTGACGCAGGGC
AGAGAAGCAGAGTTAGAGTACCTGGCGACACGAAACGGCAGCAGCAGCAG
CAGCAGCAGCATGAAGCAACGGCAGGACAGCTCAACATCGAGGGCGAACG
AAGGCGGAGGCGACGGCCTTGCGGGCAGCGGCGAAACGAACGGGAGCGCG
GGAGGCGCCCACGTTCAGCAGCCCCTGCGCTTCGAGAGCCAGCAGTTTAG
CCTCCTTCGCCTCGAGAGCGACAAGTTCAGCGAAAAGTTCAGCGACGGCA
AGGGCTCTCCCCGCAGGAGGCGAGAAACGGAGGCGGCGGCGCTACCGCTG
CCGGTGACGGGAGCGGGAGCGGGAGGAGCGCCGCAGGCGCCCCCGGACAC
GGCGGAGCCCTCGCTGCTGCAAGATGGACGCAACGCCGCCGGCACGCCTA
CTTCGACGCAGTCGCCGCCGCCGCCGACGTTGCCGGGGTGGGACGGCCCG
CTGCTGCCCGAGGACGGGGATGCGGTGCTCATCGCCGACGGGTTCCTGGT
GCCCGGTAAGGCGGACGGGGGGGTGTACCTCGTCGTCCCCCCGGCGGCGG
AGGAATCGTGTGCCCGCGGCGGCGGCGGCGACTTTGGGGTCGATGGCGCT
GCCCGTGGCGGGGAGTCTCGAGCAGAAGGCAAGGCCGGGGCTGGTGCCGC
TGCTGCTGCGGGTAGAAGCCCCCCGGAGGATAGGATTGTGCGACTGACGA
ACCCGAAGAGGGGCTGGTTCTACCACAAGGCGGTGTGGGTTGTCCTCCCG
GGGGGAAAGAAGGTGGTGCTTACGGCGAGGGTGCACAAGCCCATCTTCGG
GCAGGCGGAGGGCGAGCTCGTGCTCCTGGAGATGCCTCGAGTGGACCACC
CGTTGTCGGAGCAGAACCTGCCCTGGAGAGAGAAAGTGCTGGTGACGGGG
CCAGATGTTATGTTCGAGGTGGTTGACTTAGATCGAGAGGATAGCACGGT
CCAGGTCATCTGCGCCGAGTTTTTCGGGGGCAGGGTCACCATGCACAGCC
TCTGGGGCGGCGGCCAGCTGCCCGGCAGCCAGCCTTCGGTGACGGAGTCT
TGGGTGCTCGACGACAACGCGGGGCCGGCGTACTCGATCACTGCCGCTGA
CTTGCGGTGA
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