mRNA_Ecto-sp13_S_contig16497.4679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16497.4679.1
Unique NamemRNA_Ecto-sp13_S_contig16497.4679.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.460e-50
Identity = 73/98 (74.49%), Postives = 89/98 (90.82%), Query Frame = 1
Query:    1 QCWCGDNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPE-SDYLGCYSDPADDRIFERMASSDDMTAEVCLGHCDAYRYYGTQYSTECWCGNNA 291
            +CWCGDN  YDANG+GVC+M+CSGDS + CGGFY+M+VYENP+ S YLGCYSDPAD RIFE +A+SDDMT+E+CLG+C AY+YYGTQYST+CWCG+NA
Sbjct:   60 ECWCGDNVDYDANGEGVCDMACSGDSSQTCGGFYAMSVYENPDDSGYLGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCGDNA 157          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 6.100e-50
Identity = 73/98 (74.49%), Postives = 89/98 (90.82%), Query Frame = 1
Query:    1 QCWCGDNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPE-SDYLGCYSDPADDRIFERMASSDDMTAEVCLGHCDAYRYYGTQYSTECWCGNNA 291
            QCWCGDN  YDANG+GVC+M+CSGDS E CGGFY+M+VYENP+ S YLGCYSDPAD RIF+ +A++DDMT+E+CLG+C AY+YYGTQYST+CWCG+NA
Sbjct:   30 QCWCGDNVDYDANGEGVCDMACSGDSSETCGGFYAMSVYENPDDSGYLGCYSDPADSRIFDLVATADDMTSEICLGNCGAYQYYGTQYSTQCWCGDNA 127          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.370e-34
Identity = 60/102 (58.82%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 QCWCG-DNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPESD-------YLGCYSDPADDRIFERMASSDDMTAEVCLGHCDAYRYYGTQYSTECWCG 282
            QCWCG +   YDANG GVC+M C GD+ E CGGFY+M++YEN   D       YLGCYSDPAD R+F +  SS  MTAE+C   C    YYGTQYS ECWCG
Sbjct:  282 QCWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYENDADDGESDDPSYLGCYSDPADSRVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVECWCG 383          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.420e-33
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 QCWCGDNEG-YDANGDGVCEMSCSGDSD-EICGGFYSMTVYE-----NPESDYLGCYSDPADDRIFERMASSDDMTAEVCLGHCDAYRYYGTQYSTECWCGN 285
            +CWC +    Y  NG  VC+  C+G +D E CGGF +M++ +     NP++ YLGC+SDPAD+RIFE + SSDDMT EVC GHC AY YYGTQYSTECWCG+
Sbjct:   23 ECWCDEGTADYAQNGLAVCDYECAGSTDGEFCGGFDAMSIRQHEVDTNPDN-YLGCFSDPADNRIFELVTSSDDMTEEVCSGHCSAYPYYGTQYSTECWCGD 123          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.390e-32
Identity = 60/98 (61.22%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 QCWCG-DNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENP----ESD---YLGCYSDPADDRIFERMASSDDMTAEVCLGHCDAYRYYGTQYSTE 270
            +CWCG +   YDANG GVC+M C GD+ E CGGFY+M++YE+     ESD   YLGCYSDPAD R+FE+  SSD MTAEVC   C    YYGTQYSTE
Sbjct:   24 RCWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYEHDVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTE 121          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.730e-30
Identity = 58/105 (55.24%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 QCWCGD-NEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPESDYLGCYSDPADDRIFERMASSDDMTAEV-------CLGHCDAYRYYGTQYSTECWCGNNA 291
            +CWCGD N  Y  NG GVC+M CSG+S+E CGG YSM VY    + YLGC+SDPAD R+F   +S+  MTAE        C   C    YYGTQYS ECWCG+NA
Sbjct:  135 ECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYAQDPA-YLGCFSDPADGRMFVWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQECWCGDNA 238          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.230e-30
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 QCWCGDNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPESDYLGCYSDP--ADDRIFE-RMASSDDMTAEVCLGHCDAYRYYGTQYSTECWC 279
            +CWCGDN GY  NG GVC+M C+G++DE+CGG Y++++Y N + +YLGC+SDP  A+ R+F  R+  SDDMT  VC   C  Y  YGTQY TECWC
Sbjct:   10 RCWCGDNVGYAENGPGVCDMPCTGNTDEVCGGQYALSIYSN-DPNYLGCWSDPYTAETRLFSTRIDVSDDMTTAVCDDLCAIYPLYGTQYGTECWC 104          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.660e-24
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    1 QCWCG-DNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPESD---YLGCYSDPADDRIFERMASSDDMTAEV 216
            +CWCG +   YDANG+GVC+  C G+ DEICGGFY+M+VYEN + D   YLGCYSDPAD R+F +  SSD MTAEV
Sbjct:  112 ECWCGAEGADYDANGEGVCDTPCGGNDDEICGGFYAMSVYENAKIDDPSYLGCYSDPADSRMFVQDISSDAMTAEV 187          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.430e-22
Identity = 53/108 (49.07%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 QCWCGDNEG--YDANGD-GVCEMSCSGDSDEICGGFYSMTVYE-----NPESD-YLGCYSDPADDRIFERMASSDDMTAEVCLGHC---DAYRYYGTQYSTECWCGNN 288
            +CWC  +    YD +GD GVC+  C GD  E CGG +S  +Y       PE + Y+GCY+D   DR+   M SSDDMTA VC  HC   DA  YYGTQ+S+ECWCG +
Sbjct: 1194 ECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDA-PYYGTQFSSECWCGTS 1300          
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Match: A0A6H5KT15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT15_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.610e-21
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 QCWCGDNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPESDYLGCYSDP--ADDRIFERMA-SSDDMTAEVCLGH 228
            +CWCGDN GY  NG G C M CSG+SDEICGG Y+++VY N + DYLGC+SDP  A+ R+F  +  +SDDMT  V   H
Sbjct:   36 KCWCGDNVGYAINGPGDCAMPCSGNSDEICGGSYALSVYSN-DPDYLGCWSDPHSAESRLFPILIDTSDDMTTAVSDRH 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16497.4679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH79_ECTSI1.460e-5074.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K060_9PHAE6.100e-5074.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K646_9PHAE6.370e-3458.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P0_ECTSI1.420e-3357.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQV8_9PHAE5.390e-3261.22WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAS7_9PHAE1.730e-3055.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT8_9PHAE4.230e-3056.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW06_9PHAE7.660e-2463.16WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRE8_ECTSI2.430e-2249.07EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KT15_9PHAE2.610e-2156.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16497contigEcto-sp13_S_contig16497:2265..3820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score172.6
Seed ortholog evalue9.3e-41
Seed eggNOG ortholog2880.D7FH79
Model size291
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
Cds size291
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.3360617-CDS-Ecto-sp13_S_contig16497:2264..22851681462867.3360617-CDS-Ecto-sp13_S_contig16497:2264..2285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16497 2265..2285 -
1681462867.3492727-CDS-Ecto-sp13_S_contig16497:3264..33211681462867.3492727-CDS-Ecto-sp13_S_contig16497:3264..3321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16497 3265..3321 -
1681462867.35937-CDS-Ecto-sp13_S_contig16497:3607..38201681462867.35937-CDS-Ecto-sp13_S_contig16497:3607..3820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16497 3608..3820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16497.4679.1prot_Ecto-sp13_S_contig16497.4679.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16497 2265..3820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16497.4679.1

>prot_Ecto-sp13_S_contig16497.4679.1 ID=prot_Ecto-sp13_S_contig16497.4679.1|Name=mRNA_Ecto-sp13_S_contig16497.4679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
QCWCGDNEGYDANGDGVCEMSCSGDSDEICGGFYSMTVYENPESDYLGCY
SDPADDRIFERMASSDDMTAEVCLGHCDAYRYYGTQYSTECWCGNNA
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mRNA from alignment at Ecto-sp13_S_contig16497:2265..3820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16497.4679.1 ID=mRNA_Ecto-sp13_S_contig16497.4679.1|Name=mRNA_Ecto-sp13_S_contig16497.4679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1556bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16497:2265..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTGGTGCGGCGACAACGAGGGCTACGACGCAAACGGTGACGGCGT CTGTGAGATGTCCTGCTCCGGCGACTCTGATGAGATCTGTGGAGGATTCT ACAGCATGACAGTCTACGAGAACCCAGAGTCCGACTACCTTGGATGTTAC TCCGACCCGGCCGACGACCGCATTTTCGAGCGAATGGCTTCCTCTGACGA TATGACTGCGGAGGTGAGTGAGCAAGAGAGCACGTCAGATTTGGTACGTC TCGGTTCGTGGGTTGAGATGTGGATGATGTCGTCATGTGTCGACTGTCAC ATGGCTTGTACTCCGTGTGTGGTTTTGCTGTTGCTTGTTCGTGGTTTGTC CTTGCGCTGCCATCGTCACCAGCGTGCGAAATAGGCGTTGGATTAAGCAG CCACCGCCATCCAACAAGCGTCCACATTGTTCCCTATCCAGTTGCCTCTC CTCCTTCGACCGACCGTCGAATCCCCTCCAATACGAAAAACGGCCACAGG TCTGCTTGGGGCACTGCGACGCGTACCGATATTACGGAACTCAGTATTCA ACAGAGGTGAGTCTTCTAGCATATGTACGCACGTGCATAGAACCCGTGTT GTATGTAGATTTATACATGGCGGGGGTCAAAAATGCGCTAACGTGTTGTC GGAACGGCATCATCTCGGGCGTTGCAATGGGTGTTCAACGTTAACGCCGG TGGCCTCATTTCGGTGTTTTTCCAAGTCACTTACGTGCCTCTGATCATGT CGGTCTGGCACGTCGTCATTCGCTGCCCTGTGCAGCGGCTGGAAGTCCAT GCATCCCTCACGGGCGTCGTGACTTGTACGCAAGCGGTCTACCAGTATTC TGAAGCCCGACAGGGATTCAGTTTCTGTCACGGAAATTATCAGACCTGTT CGATTTTGACCCCATTCTTTCTGACCCTACTGAAAAGTGACCCCACTTTC CGCATTCCACTTCGTTTTAGAGTAGGCGATCTCCGGTCTCTTCTCTAGTA GCAATTTGTTTTTTTTCGGTCGATGTTTCTCGAGATTCAGTTTGCAGATT TGGTGTGGGTTGGAAGAGGTGTCCCTCCTGGCCCCTTTCCGCCCCTCCTG CAAGTTCAGTGCGAAAGTTTGTGTAAGCATTTCAGAACGGGTCCGTTGTT GTATGTCTTATTCGTAGATCTCCCCCGTGCGAATGAATGCGAACGACCGA ACCCCCACTGGTCGGAACTACCGCCGCACCTACGACGGGAAGGATGCACG TCCACGGTTGGTTGAGAACCTGCAGGAAGCGGACAGACGATTGTTTGTTT CTCGAGATCATGGTCTGACTCATTTGTGCCTGCTTGTTTGCTTGCACGCC AGATCTTCCCGTGTCCGGCTCTGCTGTTGCTGCGGCAACCGCTCCCTGAC GACGCCACCGTACCTTCCGTACGTTACGGCGCTAACGCTCTGCAGGCCAT TGGTTTGACGATAAACTCACCGCTGTCGCCTCGGTGATATTTCGCCCCCT CTGCCCCTGCCTCTCGATACTGCCGAAAACGACAGTGCTGGTGCGGCAAC AACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16497:2265..3820-

>mRNA_Ecto-sp13_S_contig16497.4679.1 ID=mRNA_Ecto-sp13_S_contig16497.4679.1|Name=mRNA_Ecto-sp13_S_contig16497.4679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16497:2265..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTGGTGCGGCGACAACGAGGGCTACGACGCAAACGGTGACGGCGT
CTGTGAGATGTCCTGCTCCGGCGACTCTGATGAGATCTGTGGAGGATTCT
ACAGCATGACAGTCTACGAGAACCCAGAGTCCGACTACCTTGGATGTTAC
TCCGACCCGGCCGACGACCGCATTTTCGAGCGAATGGCTTCCTCTGACGA
TATGACTGCGGAGGTCTGCTTGGGGCACTGCGACGCGTACCGATATTACG
GAACTCAGTATTCAACAGAGTGCTGGTGCGGCAACAACGCC
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