mRNA_Ecto-sp13_S_contig16441.4645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16441.4645.1
Unique Name	mRNA_Ecto-sp13_S_contig16441.4645.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 4.230e-53
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 303
            MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAK     + +RKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF
Sbjct:   80 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTV-SDKRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 179

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.750e-26
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMT-NPMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVIATS  +DVSKV + A DD+YF R   A KT ED FF Q +K     + ++K DQ  VDA +LA ++ + +LKAYLNAKFSL K DRPHEM+F
Sbjct:   85 LRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAEDAFFAQASK-ESVVSDQKKKDQDVVDASILAGLSKDKLLKAYLNAKFSLTKKDRPHEMVF 185

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A7S4V8G6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8G6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.260e-24
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRV+QAYVIAT+ +VDVS + + A DD+YF R   + +  ED+FF   A      +  RKADQK VDA +L A+   PMLK YLNAKFSL KGD+PH+M+F
Sbjct:  121 LRRVHQAYVIATTTTVDVSAIDVSAIDDAYFARAASSGEEGEDEFFANDAAKPAVVSETRKADQKKVDAALLKAVEAVPMLKQYLNAKFSLSKGDKPHKMVF 222

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A7S1U5W8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5W8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.120e-23
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFF--EQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVIATS+ VD++ V++P  DD +F RE+  +KTDE+QFF  E  A V    +  RK  QK VDAG+LAA+   P+L+AYL A+FSL+ GD+PH+M F
Sbjct:  140 LRRVNQAYVIATSVVVDLAGVSLPDIDDEFFAREKKESKTDEEQFFSNEPTATVV---SQARKDAQKAVDAGILAAVKKVPLLQAYLGARFSLRNGDKPHKMKF 240

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: B8CBR7_THAPS (60S ribosomal protein L6 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR7_THAPS)

HSP 1 Score: 94.0 bits (232), Expect = 4.620e-22
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAM-TNPMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVIATS  VDVS   +   DD+YF R +  +   E++FF   A      + +RKADQK VDA +L A+ + P++K YL + FSLKK DRPHEMIF
Sbjct:   77 LRRVNQAYVIATSTKVDVSGADVSKIDDAYFARVKSDSAEGEEEFFANDAAKPAVVSDQRKADQKKVDAAILKAVESTPLMKNYLGSNFSLKKHDRPHEMIF 178

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: G7J9R6_MEDTR (60S ribosomal L6-like protein n=6 Tax=Trifolieae TaxID=163742 RepID=G7J9R6_MEDTR)

HSP 1 Score: 94.0 bits (232), Expect = 1.580e-21
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVI TS  VD+S V +   DD YF++E +  TK  E +FFE   + ++     +K DQKTVDAG+L A+ + P LK YL A+FSLK G +PHE++F
Sbjct:  131 LRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: F6HLL3_VITVI (60S ribosomal protein L6 n=2 Tax=Vitis vinifera TaxID=29760 RepID=F6HLL3_VITVI)

HSP 1 Score: 93.6 bits (231), Expect = 2.130e-21
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVIATS  VD+SKV +   DD YF +E    K  E +FFE   + ++     +K DQK VDA ++A++   P LK YL A+FSLK G +PHE++F
Sbjct:  130 LRRVNQAYVIATSTKVDISKVNVEKFDDKYFAKEVQKKKKGEGEFFEAEKEEKKDLPQEKKDDQKAVDASLIASIEGVPELKVYLAARFSLKSGMKPHELVF 231

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A2G2ZW24_CAPAN (60S ribosomal protein L6 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2ZW24_CAPAN)

HSP 1 Score: 90.1 bits (222), Expect = 8.140e-21
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVIATS  VDVS+V +   DD YF++E E   +  E +FFE+  + +      +K DQK VDA +L A+   P LKAYL+A+FSLK G +PHE +F
Sbjct:   52 LRRVNQAYVIATSTKVDVSRVNVDKIDDKYFSKEVEKKVEKGEGEFFEEKKEEKNVLPQEKKDDQKAVDAVLLKAIECVPELKAYLSARFSLKSGMKPHEFVF 154

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A2G3BWK5_CAPCH (60S ribosomal protein L6 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BWK5_CAPCH)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-20
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1

Query:    4 RRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            RRVNQAYVIATS  VDVS+V +   DD YF++E E   +  E +FFE+  + +      +K DQK VDA +L A+   P LKAYL+A+FSLK G +PHE +F
Sbjct:   23 RRVNQAYVIATSTKVDVSRVNVDKIDDKYFSKEVEKKVEKGEGEFFEEKKEEKNVVPQEKKDDQKAVDAVLLKAIKCVPELKAYLSARFSLKSGMKPHEFVF 124

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BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A2G2Y4M8_CAPAN (60S ribosomal protein L6 n=6 Tax=Capsicum TaxID=4071 RepID=A0A2G2Y4M8_CAPAN)

HSP 1 Score: 92.4 bits (228), Expect = 1.100e-20
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 1

Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 303
            +RRVNQAYVIATS  VDVS V +   DD YF +E E   K  E +FFE+  + +      +K DQK VDA +L A+ + P LKAYL A+FSLK G +PHE++F
Sbjct:  162 LRRVNQAYVIATSTKVDVSGVNVDKIDDKYFAKEVEKKVKKGEGEFFEEKKEEKNVIPQEKKDDQKAVDAALLKAIESVPELKAYLGARFSLKSGMKPHELVF 264

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G468_ECTSI	4.230e-53	92.08	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YT51_9STRA	4.750e-26	57.84	60S ribosomal protein L6 n=1 Tax=Tribonema minus T...	[more]
A0A7S4V8G6_9STRA	7.260e-24	53.92	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7S1U5W8_9STRA	2.120e-23	54.81	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
B8CBR7_THAPS	4.620e-22	51.96	60S ribosomal protein L6 (Fragment) n=1 Tax=Thalas...	[more]
G7J9R6_MEDTR	1.580e-21	50.49	60S ribosomal L6-like protein n=6 Tax=Trifolieae T...	[more]
F6HLL3_VITVI	2.130e-21	49.02	60S ribosomal protein L6 n=2 Tax=Vitis vinifera Ta...	[more]
A0A2G2ZW24_CAPAN	8.140e-21	50.49	60S ribosomal protein L6 n=1 Tax=Capsicum annuum T...	[more]
A0A2G3BWK5_CAPCH	1.060e-20	50.98	60S ribosomal protein L6 n=1 Tax=Capsicum chinense...	[more]
A0A2G2Y4M8_CAPAN	1.100e-20	51.46	60S ribosomal protein L6 n=6 Tax=Capsicum TaxID=40...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16441	contig	Ecto-sp13_S_contig16441:1027..2270 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	172.9
Seed ortholog evalue	7.5e-41
Seed eggNOG ortholog	2880.D7G468
Preferred name	RPL6
Model size	306
KEGG ko	ko:K02934
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
Hectar predicted targeting category	other localisation
GOs	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons	2
EggNOG free text desc.	ribosomal large subunit biogenesis
EggNOG OGs	COG2163@1,KOG1694@2759
Ec32 ortholog description	60S ribosomal protein L6E
Ec32 ortholog	Ec-02_001470.1
Cds size	306
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462864.6377602-CDS-Ecto-sp13_S_contig16441:1026..1203	1681462864.6377602-CDS-Ecto-sp13_S_contig16441:1026..1203	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16441 1027..1203 +
1681462864.6580627-CDS-Ecto-sp13_S_contig16441:2141..2270	1681462864.6580627-CDS-Ecto-sp13_S_contig16441:2141..2270	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16441 2142..2270 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16441.4645.1	prot_Ecto-sp13_S_contig16441.4645.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16441 1027..2270 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16441:1027..2270+
coding sequence from alignment at Ecto-sp13_S_contig16441:1027..2270+

protein sequence of mRNA_Ecto-sp13_S_contig16441.4645.1

>prot_Ecto-sp13_S_contig16441.4645.1 ID=prot_Ecto-sp13_S_contig16441.4645.1|Name=mRNA_Ecto-sp13_S_contig16441.4645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGA
KVRQGRAYRRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMI
F*

mRNA from alignment at Ecto-sp13_S_contig16441:1027..2270+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16441.4645.1 ID=mRNA_Ecto-sp13_S_contig16441.4645.1|Name=mRNA_Ecto-sp13_S_contig16441.4645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1244bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16441:1027..2270+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCGCGTCAATCAGGCGTACGTGATTGCTACATCCATGTCGGTGGA
CGTGTCGAAGGTCACTATCCCCGCCGCGGACGACTCGTACTTCACGCGTG
AGGAAGTGGCTACCAAGACTGACGAGGACCAGTTCTTCGAGCAGGGAGCC
AAGGTAAGACAGGGCCGTGCCTACCGAGTTGGCGTGCTGCGGCGACCCTC
GTGGTATGCTAGACACAAGGTTGAGCCTCGTCAGGTGATGGGAAACAAAG
CAGTTGTCCGCCCAGGCTCCCAAAATGCAATGTCTTTCGGCTGCAGTAGG
TGGCCCGATATGGTGGCATCAATACCTCTCGTCACAATATTTACCCGAAA
AAGTGGTATGTTGCTACCAGTGTTAGCACTAACGATTCCCTCGTTAGTGG
CAGGCATCTTGGTCATCTCATTCCCCCCGAATGGCAAGTCCGTAGACTTT
CTGCGCTTGTTGGTGCTGCAGAGCAAAACGCAGAGTCATGTGCAATTGGC
GAGGTCAGGAGTTTCCTCAGTAAGGCAACGATTGCACTCTTCGCGGCACA
TGCCGCTAGACATACTCGGCAGTCGGTCATCGGAGCGTTTACCCAGTTGG
AATTGGTGCGCCGGGGTGTGGAGTGCTCGACGTTGACAATGTTGAGCTGC
TGCAGTTGCTTTCGCTGTTACAGCTTTTTCATAATCCATCCATGGCACGG
AAGAGAAAGTGTGACTTTGATGCTGTGCGTTTGGACATTGTTTTGCAGTC
CACCTGCAGACGAGGGTAGGTTGTGCGCCCCAGAAAGCCTCGTTGTCACT
TGGACGAACGAATTTCAGTTCACCTGGGATGGGCAGGATCTGCGTTATCA
TTTAAATAATGCTGCTAGGCAAATGCACAGCGGTCGGTGGCGTGCCCATC
AAAGCATATTAAGTGTGCACTGTCAACGGCGGCAGTATTCCCGCTACTAC
TGTTTCCGGGTGGCGACACGCCCTCTCTCCGGTACCACCGACGTGACGGT
GCTCTACGGAGAGGGGGCGTTTTTTGCGAGGCTTTGACCGCTTTTCTCTT
TTTTGTGCTGTGTTGCGCCCCTAAATTGTTTGCCACGTCGACAGAGCTCC
GCCGTGTCCGACAAGCGGAAGGCTGACCAGAAGACCGTCGACGCCGGTGT
TTTGGCGGCCATGACGAACCCCATGCTAAAGGCATACCTCAACGCGAAGT
TCTCTCTCAAGAAGGGGGACCGCCCGCACGAAATGATCTTTTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16441:1027..2270+

>mRNA_Ecto-sp13_S_contig16441.4645.1 ID=mRNA_Ecto-sp13_S_contig16441.4645.1|Name=mRNA_Ecto-sp13_S_contig16441.4645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16441:1027..2270+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCGCGTCAATCAGGCGTACGTGATTGCTACATCCATGTCGGTGGA
CGTGTCGAAGGTCACTATCCCCGCCGCGGACGACTCGTACTTCACGCGTG
AGGAAGTGGCTACCAAGACTGACGAGGACCAGTTCTTCGAGCAGGGAGCC
AAGGTAAGACAGGGCCGTGCCTACCGACGGAAGGCTGACCAGAAGACCGT
CGACGCCGGTGTTTTGGCGGCCATGACGAACCCCATGCTAAAGGCATACC
TCAACGCGAAGTTCTCTCTCAAGAAGGGGGACCGCCCGCACGAAATGATC
TTTTAG