mRNA_Ecto-sp13_S_contig16356.4595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16356.4595.1
Unique NamemRNA_Ecto-sp13_S_contig16356.4595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16356.4595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16356contigEcto-sp13_S_contig16356:708..3368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons5
Cds size714
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16356.4595.1prot_Ecto-sp13_S_contig16356.4595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16356 711..3368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462860.9461017-UTR-Ecto-sp13_S_contig16356:707..7101681462860.9461017-UTR-Ecto-sp13_S_contig16356:707..710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16356 708..710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462860.956951-CDS-Ecto-sp13_S_contig16356:710..8991681462860.956951-CDS-Ecto-sp13_S_contig16356:710..899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16356 711..899 +
1681462860.9666083-CDS-Ecto-sp13_S_contig16356:1249..13871681462860.9666083-CDS-Ecto-sp13_S_contig16356:1249..1387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16356 1250..1387 +
1681462860.9764526-CDS-Ecto-sp13_S_contig16356:1624..17141681462860.9764526-CDS-Ecto-sp13_S_contig16356:1624..1714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16356 1625..1714 +
1681462860.9851372-CDS-Ecto-sp13_S_contig16356:2391..25831681462860.9851372-CDS-Ecto-sp13_S_contig16356:2391..2583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16356 2392..2583 +
1681462860.9938624-CDS-Ecto-sp13_S_contig16356:3263..33681681462860.9938624-CDS-Ecto-sp13_S_contig16356:3263..3368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16356 3264..3368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16356.4595.1

>prot_Ecto-sp13_S_contig16356.4595.1 ID=prot_Ecto-sp13_S_contig16356.4595.1|Name=mRNA_Ecto-sp13_S_contig16356.4595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSV
AISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHEKAI
KILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNE
VSYNTAIRACGDAGQLSEALDLMDEMERRGVKASVITYGTAVAACQRAAD
WKMALELLAAMRREQIEPNEIVYGGIIKACCAAGQASK
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mRNA from alignment at Ecto-sp13_S_contig16356:708..3368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16356.4595.1 ID=mRNA_Ecto-sp13_S_contig16356.4595.1|Name=mRNA_Ecto-sp13_S_contig16356.4595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16356:708..3368+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGCAAGAAGACGAGGTGTGGGTGGACAAGTACGCCTACACCACCGC
CATCCACGCCGCGGGGCAGCTTGGGAAGTGGGCCCGGTGCGTCCGCTACC
TGGACGAGATGGACTCCAACGGCGTGGCCAAGGACGTGGTGACCGTTAGC
GTGGCCATAAGCGCCTGCGCCGACAAGGGCCAGTGGGCACAGGTGAAGTG
TGACCCTCGCTTGTGGAAAATCCATGTACGAAACAACAGAACTCAGATTG
TTGTACAAGTTTCAAGTTACAACGATACGCGTTGTACTTGACGCGAAAAG
AAGTTTCGTGCAGGAATCCGCGACACGGCTTTCCAAATTCGAACGCGAAA
TTGAAATGAAGAACACCGCTTAGCTGCTACTCCGTACAAAGTTACACGCC
GTAAACGCTGTTTCACTTGCTCCAATTTGATCCTGACTACACGTATTATG
TGCCTCCGTAGCATTGAGCAACGCTATGCTTAAGTCGCCACTTTTTGAGC
GACGCGGTTGATGACGACTTTGATGGCTGGCGGATGGTGTAGGCGGAGAA
GCTTCTGGAGGACATGCTGGACGACGGTCTCACCCCCAACGTCATCACGT
ACACGTCGCTGATGGTGGTGTTGAGGAGAGGCGGCCAGCACGAAAAAGCC
ATCAAGATCCTCGACCTCATGAGATCCAAGGTACGATACGTGGTACGTGA
TCGTACGAGATGGAGGGCCCGCGAAATAGACAGGAACCGAGGGAGGTGGG
TGGGGGGGTACGGGGAATGGGATTGTTGTCAGTTGTGCACTCGTGCTCTC
TCTTTTTGAGATTGATCGCTCTTCTTCTTGCACGAACTCTGCCTTATCCC
CGCCGGCATGTTGTTTTGCTTTTGCGTGTCTCTTTTGTGTGTCTTTTTTT
TGTCTTGCTTTCATCAGGGAGTGATGCCCAATGTGCGGACCTACAGCGTG
GCCATAGCTGCGTGCGCGGATGCTAAGGAGTGGCGGCGGGCCTTAGCGCT
CCTGAAGGTAACTGGATGAGGTGTACCGCGTGACGAGTCGGCCAAGATGC
ATCGTGTTTGCCCGTGTGTTTACCGCCAGGCCGAGCTGAGTGTATTGCGA
TGCCGTCATGACGCTGCTGTGGCGTCTAGGTAAGAATCAAGGGTCGTGGC
AAAGTTTTTGTAGCAGGTAGTCAACATCGCTGCTCTGCCCTCCGGAAAAA
ATACGCACACTTTTTTTCCCTTTCACGTTGTAGGAAGAGCGGGACGCCAT
AATTTTGTCCTCGCCCTCGCCCTACCCGTGGAAGCGTTTGACATTACAAG
GCGTTCCTGTTTATTTCGCTTTTTTTCGTAACGATGGCTATTGCTGGAAA
GTGGCTTCCAAGTCCGATTATGGAACTCTGAAGTTTTCTTTGTTGTTGTG
ATTTCAGCTGTACTTTACTTATCATGTCGGCACAATAGACGCTCGAAAAG
CGCCCAAAAAGTGTGTCGACCCGTACAGCAGCTGTCCCATCCCATGGAAT
AGTTCTCTTGTCCCGGTTCGTAGTTTGGTTTTAAAGAAACACCGAACCGG
CCCGTCTAGCTAGACAAAAGGGCCGACGAAGAGGTTATGAAATCACCACA
AGGAAAAGAGAACCAGAACAATCGAGCAAAGAAGCAATCACTCAACAGAA
TAAAGATTTGTTATAACACCCCACCCGCGAACAGGAGATGGAGAGGGAAG
GCGTGTCGCCGAACGAGGTCTCGTACAACACGGCCATCCGTGCCTGCGGC
GACGCAGGGCAGCTGTCGGAAGCCCTCGACCTCATGGACGAGATGGAGAG
AAGGGGGGTGAAGGCATCGGTCATAACGTACGGGACCGCCGTGGCCGCTT
GTCAGAGGGCCGCTGACTGGAAGATGGTGAGAGAGAGGGGGGGGGGGGGG
CACTCATAGTCATGGTTCATGCCATAGTCGTTAGACCATTGACCTTGCAT
CCCTACAAAGCTGGAACGGAGCACGCGGGGTTCTCACCGGACGAGGCTCT
CACACGACCAAGCGCGACGCGCCGTGAGGTATTCGGCTCGAGTTGCGTAG
AGGGTGGGACGAGGGATTGGTAAATTGCAGCTGTGTTGGTGTTGATGTTG
GTCTGTTGCTTTGGCGATCAGGGTTGGGTGTGGTGCATGCAGGAGTGTGG
CGCGTTTGTGCGCTATGCGTTGCGGTTTCGTTGTTGAGGTTGTGTGTCCA
TGCGGAGAGCGAATGATGTCAGAGCAGAGGTGGGGGGGGAGGAGGGACAA
CGTCAGGCATGCATGTGCTTCGAAACTTTCGACGATTGACGATTGGCAGT
CAAGGGGTTTCGATGGTGCCTGTGGTTGATGGGGGGGGCACGCAAGCGGG
CTCCAACGGAAGCATAATACATGCATCGGTAGATACGAAGGGCCTCCGCA
AGCCATGGTTCGTTTTTGTTGTCATGCTGGTCTCCTCCTCTTGAAATCGG
TCAGGCCGAGACAAGCTGCGAAACGTGTGCCACTCGCTCACCTGTCTCCC
ATGCTTTTTTTTTTTTTCTGTGTGTATTTTTTTTTTATGATTTCTGTCAA
TCGTAGGCCCTGGAGCTGCTGGCTGCGATGCGCCGAGAACAGATCGAGCC
GAACGAGATCGTGTACGGAGGGATAATCAAGGCGTGCTGCGCCGCCGGTC
AAGCCTCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16356:708..3368+

>mRNA_Ecto-sp13_S_contig16356.4595.1 ID=mRNA_Ecto-sp13_S_contig16356.4595.1|Name=mRNA_Ecto-sp13_S_contig16356.4595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16356:708..3368+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGAAGACGAGGTGTGGGTGGACAAGTACGCCTACACCACCGCCAT
CCACGCCGCGGGGCAGCTTGGGAAGTGGGCCCGGTGCGTCCGCTACCTGG
ACGAGATGGACTCCAACGGCGTGGCCAAGGACGTGGTGACCGTTAGCGTG
GCCATAAGCGCCTGCGCCGACAAGGGCCAGTGGGCACAGGCGGAGAAGCT
TCTGGAGGACATGCTGGACGACGGTCTCACCCCCAACGTCATCACGTACA
CGTCGCTGATGGTGGTGTTGAGGAGAGGCGGCCAGCACGAAAAAGCCATC
AAGATCCTCGACCTCATGAGATCCAAGGGAGTGATGCCCAATGTGCGGAC
CTACAGCGTGGCCATAGCTGCGTGCGCGGATGCTAAGGAGTGGCGGCGGG
CCTTAGCGCTCCTGAAGGAGATGGAGAGGGAAGGCGTGTCGCCGAACGAG
GTCTCGTACAACACGGCCATCCGTGCCTGCGGCGACGCAGGGCAGCTGTC
GGAAGCCCTCGACCTCATGGACGAGATGGAGAGAAGGGGGGTGAAGGCAT
CGGTCATAACGTACGGGACCGCCGTGGCCGCTTGTCAGAGGGCCGCTGAC
TGGAAGATGGCCCTGGAGCTGCTGGCTGCGATGCGCCGAGAACAGATCGA
GCCGAACGAGATCGTGTACGGAGGGATAATCAAGGCGTGCTGCGCCGCCG
GTCAAGCCTCCAAG
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