mRNA_Ecto-sp13_S_contig16338.4591.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16338.4591.1
Unique NamemRNA_Ecto-sp13_S_contig16338.4591.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16338.4591.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 3.860e-37
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    4 SARRSIREAAEAAETVGERVVKGDDLKAARERMIEEKKRLLSDGFLSKRETTYFMKKYRAELLQIKEEQELFQSARSSVLSLR 252
            SARRSIREAAEAAETVGERVVKGDDL+AARERMIEEKKRLLSDGFLS+R+TTYFMKKYRAELL+IKEEQELFQSARSSVLSLR
Sbjct:   77 SARRSIREAAEAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLR 159
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BLAST of mRNA_Ecto-sp13_S_contig16338.4591.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.950e-35
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 1 
Query:    4 SARRSIREAAEAAETVGERVVKGDDLKAARERMIEEKKRLLSDGFLSKRETTYFMKKYRAELLQIKEEQELFQSARSSVLSLR 252
            +ARRSIREAA+AAETVGERVVKGDDL+AARERMIEEKKRLLSDGFLSKRET YFMKKYRAELL+IKEEQELFQSARSSVLSLR
Sbjct:  279 NARRSIREAAKAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSKRETIYFMKKYRAELLRIKEEQELFQSARSSVLSLR 361
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16338.4591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTP1_ECTSI3.860e-3795.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP85_9PHAE2.950e-3593.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16338contigEcto-sp13_S_contig16338:786..2727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size252
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462860.5066445-CDS-Ecto-sp13_S_contig16338:785..8581681462860.5066445-CDS-Ecto-sp13_S_contig16338:785..858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16338 786..858 -
1681462860.5153189-CDS-Ecto-sp13_S_contig16338:1717..18121681462860.5153189-CDS-Ecto-sp13_S_contig16338:1717..1812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16338 1718..1812 -
1681462860.5238807-CDS-Ecto-sp13_S_contig16338:2643..27271681462860.5238807-CDS-Ecto-sp13_S_contig16338:2643..2727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16338 2644..2727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16338.4591.1prot_Ecto-sp13_S_contig16338.4591.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16338 786..2727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16338.4591.1

>prot_Ecto-sp13_S_contig16338.4591.1 ID=prot_Ecto-sp13_S_contig16338.4591.1|Name=mRNA_Ecto-sp13_S_contig16338.4591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
FSARRSIREAAEAAETVGERVVKGDDLKAARERMIEEKKRLLSDGFLSKR
ETTYFMKKYRAELLQIKEEQELFQSARSSVLSLR
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mRNA from alignment at Ecto-sp13_S_contig16338:786..2727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16338.4591.1 ID=mRNA_Ecto-sp13_S_contig16338.4591.1|Name=mRNA_Ecto-sp13_S_contig16338.4591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16338:786..2727- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTAGCGCACGGAGGTCCATCCGCGAGGCAGCAGAAGCAGCCGAAACGGT
GGGAGAACGAGTCGTCAAGGGCGATGACCTTAAGGTGGGTCTGTTCTGTT
TCAAGAGATTAGAAACGAGAAAACTGGACCTCATACATTGTTTTGGCTTG
TCTCGACCTTCTCAATTCGTAGCCACTGTGTTGGCAGCCATGCAGTTTCC
ACTTCCACATAGCGAGTTAAATACTCCGGAGAGATCCGGACCAACAACCC
AGCTTATTGCGTTTCTTGCCAGCGTGTTTGAGACTAATCTGCTGCTGATG
AACGCCTGCCTCTCAGTGAAGAAACATCCCCAAGAGATGACACATCCCAT
CAATGCGTTTGATGAGCGTTGATGCTGAATGTGTTGCTTTCGACACACGT
ACAATATCTGTTCCCACAATATCCCTCTATGCACTGAACGATTTTTACAC
AACATCGGAGGAATGGGACAAAAATCGACCCCGTGGTCGGCGAGGGAATA
GCATGACTGAATTAATCGCACAAACAAAAGTTACGTAAAGCCCCTCAGAA
GGAAGGTGGAGAAAAAACAAGACCATTACATCGTTACCTCTCCCTGGTGG
CCCCGCCTGATACGCACAGAAAATTGCGAAAAGTTGTGAAGACTGGCTTC
CAGAGAAAAGATGACGAAAATATCACGCATAGATTTCTTCGCTTAGCGTA
TCGTGGCTAACATTAAACACGTTTTGCTCTTTGCTCCGTTCACGCCGCCA
TGTTTCCAAGTGCCCGTACGAGTTGAGACTAAATACGTGTGCCTTGGGTA
CTTCGTTGAGTTTAAAACAGTAGCAGAGCGCGTCCAATCTGCAATACATG
CTACTGTAGTGTATTCATGCTGGTGTGGTTGTTGTTGTGCACTTTGTGCT
GCGATTGGGTTCAAGGCGGCGCGCGAAAGGATGATCGAGGAGAAGAAGCG
GCTGCTCTCGGACGGCTTCCTGAGCAAACGCGAAACAACCTACTTCATGA
AGAAGTACAGGTGACTCTGTGTCAGTTCTGGCTCTTTGTCCAATTCTATA
TGCCGTCCAGTGCGGTGAGGATGATCTCGAACTCCTAGTCTTACGCTGCG
TCCCTTTTTGACACAAACGTGGGTATGTTACTACCGAGTACATTCATGTC
TTGGAATGGGCCTGTCTTATGGTTCTCGTGTGCAACGGTTGGAAGCTGGG
CAGCAGCACTGGCATGAATGTGAACGGACGGCATGCCACTGCCCTGGCCC
TTGTAGTTCCCATCGCGCCACGTGCTGGGAAGGACGAGGATTGTCTTCAT
CTCTCCAGTGTTTACCATAACGAGCCTTCGAGAACGTACATTCTGAAACA
GTTGGCGAAAGTGGTTGGTTCGGAAACGCGTTTAACGATTGCAGTTTAGC
AGCTTGCTGAGCAGCGGAGGATGCGCTTTTCCTGTTTTGTTGGAAGCAGC
ATTTTCTCCATGATGCCGCTGACTACCGTTGTACTAATCAGCCCTGAAAG
AAAGGAGTCCGTTCCCTGTGTTCGGACTCGGGATGCTTGACACCACCGAG
CAAGGCCCCCCGTAACAAACCACAGAGGAGCAAAATCGCGCCTGACAAAA
CGCGAAGGCTGTCTGTTCCCCCACCCTCGACGCCGAATTGATTATTTGGA
GTACGTTTTTGCCCATTTTGCGACTCACCGAGCGCCAAGAAGACGAGCAC
CCTTCCTCACGGCGGTTCTTCTGTCATGACGCAATGCCTGCATGGGTGAT
AAACAACCCACCGTCTGCACCAACATCTTGTGTTGCCTACAGTCTGTCCG
TTCTGTTGTTTCTTGTACAATGTGCTGATACCTGACAAGGCCTGCCCACC
CGATTTTGTTCATGAACAGGGCGGAGCTGTTGCAGATCAAAGAAGAACAG
GAGCTGTTCCAGTCCGCGAGGAGCTCGGTGTTATCGCTGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16338:786..2727-

>mRNA_Ecto-sp13_S_contig16338.4591.1 ID=mRNA_Ecto-sp13_S_contig16338.4591.1|Name=mRNA_Ecto-sp13_S_contig16338.4591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16338:786..2727- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTAGCGCACGGAGGTCCATCCGCGAGGCAGCAGAAGCAGCCGAAACGGT
GGGAGAACGAGTCGTCAAGGGCGATGACCTTAAGGCGGCGCGCGAAAGGA
TGATCGAGGAGAAGAAGCGGCTGCTCTCGGACGGCTTCCTGAGCAAACGC
GAAACAACCTACTTCATGAAGAAGTACAGGGCGGAGCTGTTGCAGATCAA
AGAAGAACAGGAGCTGTTCCAGTCCGCGAGGAGCTCGGTGTTATCGCTGC
GG
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