mRNA_Ecto-sp13_S_contig16328.4587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16328.4587.1
Unique NamemRNA_Ecto-sp13_S_contig16328.4587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16328.4587.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 2.640e-73
Identity = 151/198 (76.26%), Postives = 156/198 (78.79%), Query Frame = 3 
Query:  189 CPSPCGLYVATADKADAIGTNGKPRAPLSCEVCTTTILPLHTYWSRKITDKVSAYSHADPDDCNPPEAGTGICSKCSASDVDLFVVNTDGAEQCVDCFDRKRNSVLRAAQHTCVEKRARYNKRNNN--TVTPXXXXXXXXXXPPVPSTSAAAAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTNTTRAAKKPK 776
            CPSPCGLYVATAD ADAIGTNGKPRAPLSCEVCTTTI P HTYWSRKITDKVSAY+HADPDDCNPP A +G C+KC A+DVDLFV  TDGAEQCV CFDRKR +VLRAAQ TCVEKRARYNKRNN   TVTP          PP PSTSAAAAKPXXXXXXXXXXXXXXX                DTNTTRAAKKPK
Sbjct: 3359 CPSPCGLYVATADDADAIGTNGKPRAPLSCEVCTTTIPPRHTYWSRKITDKVSAYTHADPDDCNPPGADSGNCTKCPATDVDLFVFTTDGAEQCVQCFDRKRVTVLRAAQATCVEKRARYNKRNNTVATVTPTTSPTK----PPAPSTSAAAAKPXXXXXXXXXXXXXXX----------------DTNTTRAAKKPK 3536
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16328.4587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE2.640e-7376.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16328contigEcto-sp13_S_contig16328:41..2450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size807
Hectar predicted targeting categoryother localisation
Exons2
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.9913409-UTR-Ecto-sp13_S_contig16328:40..651681462859.9913409-UTR-Ecto-sp13_S_contig16328:40..65Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16328 41..65 -
1681462860.0210516-UTR-Ecto-sp13_S_contig16328:2424..24501681462860.0210516-UTR-Ecto-sp13_S_contig16328:2424..2450Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16328 2425..2450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462860.0001924-CDS-Ecto-sp13_S_contig16328:65..6601681462860.0001924-CDS-Ecto-sp13_S_contig16328:65..660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16328 66..660 -
1681462860.0131106-CDS-Ecto-sp13_S_contig16328:2263..24241681462860.0131106-CDS-Ecto-sp13_S_contig16328:2263..2424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16328 2264..2424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16328.4587.1prot_Ecto-sp13_S_contig16328.4587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16328 66..2424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16328.4587.1

>prot_Ecto-sp13_S_contig16328.4587.1 ID=prot_Ecto-sp13_S_contig16328.4587.1|Name=mRNA_Ecto-sp13_S_contig16328.4587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
MREDAQQLKQADAAVAAPTVFKQLPSFHINSAEYICILCGAPGSAFTRSK
FSLMCPSPCGLYVATADKADAIGTNGKPRAPLSCEVCTTTILPLHTYWSR
KITDKVSAYSHADPDDCNPPEAGTGICSKCSASDVDLFVVNTDGAEQCVD
CFDRKRNSVLRAAQHTCVEKRARYNKRNNNTVTPTVTPTVSPTKPPVPST
SAAAAKPAAAKPATAKPAAAKPAAAKPAATKPAAAKPADTNTTRAAKKPK
H*
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mRNA from alignment at Ecto-sp13_S_contig16328:41..2450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16328.4587.1 ID=mRNA_Ecto-sp13_S_contig16328.4587.1|Name=mRNA_Ecto-sp13_S_contig16328.4587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2410bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16328:41..2450- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAACGATCTCAAGTTCTCGCTGGCATGCGGGAAGACGCTCAACAGTTG
AAGCAGGCGGACGCCGCCGTGGCTGCCCCCACGGTCTTCAAGCAGCTGCC
GTCATTCCACATCAACAGCGCAGAGTATATCTGCATCCTCTGCGGTGCGC
CTGGGTCGGCATTCACCCGTTCCAAATTCTCTTTGATGTGAGTCCATTAC
ACCACCAGTATTATTTTGGATGGTGTTTGTTGTAGATATATATATAGTCT
ATGACCATTCCATCCATAATATAGATAGTCTACTACTGCTTGTATTTTGT
GCCTTGCACCGCAACTGCCAGCACAAAAATTAGCACAACACCACCAAGAC
AATTGCCATCGCACCACCTTTAACCGTGTGCTCCACTGTGGTATCTCTGG
GAGTCATACTTATGTTGGGCATAGGTACAGTATCGTCCACATTCATTCGG
GGATCGTAGCCTCCCACCCAACGCAGGTAAAAGTTGCTTTCCAACAAAGA
GGTCAACATCAACAAACTGTGCGCAGCGGCAGAACCAAAGCTGGTTCAAC
TTCGCTGTGACCGTGACCCATTTCTCCCCTCCAAAGCAAAATCAAAGGGT
AAAAACAGCTTGCCGATAAAGGGCATGACCTGCTTCACGTGCCTGTGTGA
CGAACACGAACCGATGAAAAAAACGGGAGCGAGCGTCAAATTTTTTGTAC
TTGCATGCATTGCAATTAAACGCGCTCCTGCTACAAACAAACGCGCAACT
GCTGTGTAACGGATATCTCTACGTTCGTTCACGTTTCGTCGAGTTCCCTT
CAGGGTGTGTACTGTGTGGACCGTCGCGTCAACATCTTCGTCGACTTCCC
TACTGTACCTACTGAACGTTGTACGAATTGAGTTGTCTTTCAAGCGGGCA
TCGACCATGGACCCGTCGATACACTTACTTGCCCCATGGTTCAGCGCCCA
CCGACTCTATTCTATGTCTGTGTATGCATAGGAACATGATACACTTACAG
CAGTAGTACCTGCTGTGTACATCTCCAACAGGTCATCTGACATCACAATC
TACGACGCACCGAACACAAACAAAAAATATAACAGGGGATCGCCCGTAGA
CACACACACACACGTCGGACTATCAGCTGCATCGCCCGTTTTAGCGCCAA
CTACTAGATAGACTATATCTACTATTTTTGGCGGAACCTCAGGTCCAAAG
TGACGTTTTTTTTGTAAAATACTCTGTTGTGCTGTACTACTCTTCTTTCC
TACAACCATCGCGACCGACCGCACCATCTACAAATTAATGACGACATTCA
AACGAACAATCGCAAAAAAACCAATCAAAACAAAGCAAACAAGAGAGAGA
GGCCGTGGCAATACATACAGCAGTACATAGTCGTTTCTCTTTACATGCCG
CTTGCTAGTCAACGCTGGTGCTACAAGAACACCCCATGTATCGCCGGTTG
CGCAAGATTTATCAACCGCGACACAAGCTATCTGCCGCTGGCTTCCTTTC
TTTCCGTTTTAGGCGATCGCCCTGCTCCCATCGGTTCCAAGCGTCAACAG
CTAGCTCCTTTTGTACAAACTTCATTTACCTATCGCTCGCCTTTCTTTCT
TATTTGTGGCGATCGGGTCCTTGCTTGCGTTGATAGCCCTACAATTCTTT
TCACATCCTATCCATGTACTGACTTCCACGCCGTCATGCCCCCTACAAAT
ATTTTAACCAGTCGCCATTATTTCGAATCCCTTGCTAACCCCTCCGCCGG
TCATCATTCCACCACCGCCCCAATCCTTTCAACGTCTCAGGTGCCCTTCA
CCCTGCGGCCTCTACGTTGCCACGGCCGACAAAGCCGACGCCATCGGCAC
CAACGGCAAGCCTAGGGCGCCCCTGTCGTGCGAAGTATGCACGACAACAA
TACTACCGCTGCACACGTACTGGTCCAGGAAAATTACCGACAAAGTATCG
GCATACAGCCACGCCGACCCCGACGACTGCAACCCCCCGGAAGCCGGTAC
CGGCATTTGCTCCAAATGTTCGGCATCTGACGTCGACTTGTTCGTCGTAA
ACACCGACGGCGCGGAGCAGTGTGTCGATTGCTTCGATCGAAAGCGCAAC
TCTGTCCTCCGCGCCGCACAGCACACATGCGTCGAGAAACGTGCGAGGTA
CAACAAACGGAACAACAACACCGTCACACCCACCGTCACACCCACCGTGA
GCCCGACCAAACCGCCTGTTCCGTCGACGTCCGCCGCCGCCGCCAAGCCC
GCTGCCGCCAAGCCCGCTACCGCCAAGCCCGCTGCCGCCAAGCCCGCTGC
CGCCAAGCCCGCTGCCACCAAGCCCGCTGCCGCCAAGCCCGCTGACACCA
ACACCACCCGCGCCGCCAAGAAACCGAAGCACTGAATCAATGAATGAAGT
CGTCGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16328:41..2450-

>mRNA_Ecto-sp13_S_contig16328.4587.1 ID=mRNA_Ecto-sp13_S_contig16328.4587.1|Name=mRNA_Ecto-sp13_S_contig16328.4587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16328:41..2450- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGAAGACGCTCAACAGTTGAAGCAGGCGGACGCCGCCGTGGCTGC
CCCCACGGTCTTCAAGCAGCTGCCGTCATTCCACATCAACAGCGCAGAGT
ATATCTGCATCCTCTGCGGTGCGCCTGGGTCGGCATTCACCCGTTCCAAA
TTCTCTTTGATGTGCCCTTCACCCTGCGGCCTCTACGTTGCCACGGCCGA
CAAAGCCGACGCCATCGGCACCAACGGCAAGCCTAGGGCGCCCCTGTCGT
GCGAAGTATGCACGACAACAATACTACCGCTGCACACGTACTGGTCCAGG
AAAATTACCGACAAAGTATCGGCATACAGCCACGCCGACCCCGACGACTG
CAACCCCCCGGAAGCCGGTACCGGCATTTGCTCCAAATGTTCGGCATCTG
ACGTCGACTTGTTCGTCGTAAACACCGACGGCGCGGAGCAGTGTGTCGAT
TGCTTCGATCGAAAGCGCAACTCTGTCCTCCGCGCCGCACAGCACACATG
CGTCGAGAAACGTGCGAGGTACAACAAACGGAACAACAACACCGTCACAC
CCACCGTCACACCCACCGTGAGCCCGACCAAACCGCCTGTTCCGTCGACG
TCCGCCGCCGCCGCCAAGCCCGCTGCCGCCAAGCCCGCTACCGCCAAGCC
CGCTGCCGCCAAGCCCGCTGCCGCCAAGCCCGCTGCCACCAAGCCCGCTG
CCGCCAAGCCCGCTGACACCAACACCACCCGCGCCGCCAAGAAACCGAAG
CACTGA
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