mRNA_Ecto-sp13_S_contig16325.4585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16325.4585.1
Unique NamemRNA_Ecto-sp13_S_contig16325.4585.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16325.4585.1 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.730e-5
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = -1 
Query:  539 ALEGTEFECYATFDLGSSQSLTKLTI 616
            ALEGTEFECYATFDLGSSQSL KLTI
Sbjct:   19 ALEGTEFECYATFDLGSSQSLIKLTI 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16325.4585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRB9_ECTSI2.730e-596.15F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16325contigEcto-sp13_S_contig16325:2871..3539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size616
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.8521898-UTR-Ecto-sp13_S_contig16325:2870..29191681462859.8521898-UTR-Ecto-sp13_S_contig16325:2870..2919Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16325 2871..2919 +
1681462859.8738966-UTR-Ecto-sp13_S_contig16325:3270..33161681462859.8738966-UTR-Ecto-sp13_S_contig16325:3270..3316Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16325 3271..3316 +
1681462859.8821657-UTR-Ecto-sp13_S_contig16325:3369..35391681462859.8821657-UTR-Ecto-sp13_S_contig16325:3369..3539Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16325 3370..3539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.862819-CDS-Ecto-sp13_S_contig16325:2919..32701681462859.862819-CDS-Ecto-sp13_S_contig16325:2919..3270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16325 2920..3270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16325.4585.1prot_Ecto-sp13_S_contig16325.4585.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16325 2920..3270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16325.4585.1

>prot_Ecto-sp13_S_contig16325.4585.1 ID=prot_Ecto-sp13_S_contig16325.4585.1|Name=mRNA_Ecto-sp13_S_contig16325.4585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MCLNVTFGYCDGCTMKASPLTCGGTVHSRSFPWGRAVAKYELSDNSKLEA
QQQTESHQVAICKLGKAAMARRRVLKSIEKHLLVERETFVNFQILLAERV
PKAPTRHDCKWWFSSI*
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mRNA from alignment at Ecto-sp13_S_contig16325:2871..3539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16325.4585.1 ID=mRNA_Ecto-sp13_S_contig16325.4585.1|Name=mRNA_Ecto-sp13_S_contig16325.4585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16325:2871..3539+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGTGTGCGGACGAACAAGCCTTGAATCTTTGAATGACTTCAAACTAA
TGTGTTTAAACGTAACTTTCGGATACTGCGATGGCTGCACTATGAAGGCT
TCTCCCCTCACATGTGGTGGCACGGTTCACTCACGAAGTTTCCCGTGGGG
TAGAGCTGTTGCAAAATACGAACTATCCGACAACTCGAAACTTGAGGCTC
AACAACAAACAGAGAGCCACCAGGTGGCTATATGCAAACTCGGCAAAGCT
GCCATGGCTCGTAGACGTGTGCTTAAATCGATAGAGAAACATCTTCTTGT
CGAAAGAGAAACCTTTGTTAACTTTCAAATTCTCCTCGCTGAACGCGTTC
CAAAGGCACCCACACGTCATGACTGTAAGTGGTGGTTTTCTTCGATCTAG
TGCAGCGGGCATGTACGCCGTGTTTGGGTTTCCAGTGCTGTTAAACAATG
GCATTCAAAGGCACCACCGACCAACCGAACCACCGCAGCAAAAACACGGT
ACATGAGAGGAGGCACAGAACTCAGGCCTGGCCGCCCGACGGCGGCGGCA
GTTGCGGCGGATATGCTCTGATATCCTCCTTACTCCTCACATATGGTAAG
CTTGGTGAGGCTTTGCGACGAGCCGAGATCGAAGGTCGCGTAGCACTCGA
ACTCTGTTCCCTCCAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16325:2871..3539+

>mRNA_Ecto-sp13_S_contig16325.4585.1 ID=mRNA_Ecto-sp13_S_contig16325.4585.1|Name=mRNA_Ecto-sp13_S_contig16325.4585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16325:2871..3539+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTTAAACGTAACTTTCGGATACTGCGATGGCTGCACTATGAAGGC
TTCTCCCCTCACATGTGGTGGCACGGTTCACTCACGAAGTTTCCCGTGGG
GTAGAGCTGTTGCAAAATACGAACTATCCGACAACTCGAAACTTGAGGCT
CAACAACAAACAGAGAGCCACCAGGTGGCTATATGCAAACTCGGCAAAGC
TGCCATGGCTCGTAGACGTGTGCTTAAATCGATAGAGAAACATCTTCTTG
TCGAAAGAGAAACCTTTGTTAACTTTCAAATTCTCCTCGCTGAACGCGTT
CCAAAGGCACCCACACGTCATGACTGTAAGTGGTGGTTTTCTTCGATCTA
G
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