mRNA_Ecto-sp13_S_contig16322.4581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: D8LQ33_ECTSI (Endo-1,3-beta-glucanase N-terminal, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ33_ECTSI) HSP 1 Score: 147 bits (370), Expect = 9.300e-45 Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 MRWLSVFLVVVGIGMIPAERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ 213
MRWLSVFL VVGIGMIPAERVLVWEDNFDGNSLDEAVW LNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ
Sbjct: 1 MRWLSVFLHVVGIGMIPAERVLVWEDNFDGNSLDEAVWALNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ 71
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE) HSP 1 Score: 142 bits (359), Expect = 6.180e-38 Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1
Query: 1 MRWLSVFLVVVGIGMIPAERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ 213
MRWLSVFL VGIGMIPAERVLVWEDNFDG+SLDEAVW LNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ
Sbjct: 1 MRWLSVFLHSVGIGMIPAERVLVWEDNFDGDSLDEAVWALNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ 71
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: UPI001128F37D (glycoside hydrolase family 16 protein n=1 Tax=Flavobacterium jejuense TaxID=1544455 RepID=UPI001128F37D) HSP 1 Score: 73.6 bits (179), Expect = 4.110e-14 Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 1 MRWLSVFLVVVGIGMIPAE-RVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQV 210
M+ V L+V G+ + LVWE+NFDGN+LDE VW GNGC +CGWGNNE Q YT +NH+V
Sbjct: 1 MKHYLVLLLVFNFGLAQNNSKKLVWEENFDGNALDEKVWNFELGNGCPN---ICGWGNNESQIYTNENHKV 68
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: A0A2E4P871_FLASP (Laminarinase n=2 Tax=Flavobacterium TaxID=237 RepID=A0A2E4P871_FLASP) HSP 1 Score: 72.8 bits (177), Expect = 8.330e-14 Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 10 LSVFLVVVGIGMIPAERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQV 210
+S+F + + L+WE+NFDGN LDE+VW G+GC +CGWGNNE+Q YT DNH V
Sbjct: 7 ISLFCTAAAFAQVKNKGKLLWEENFDGNKLDESVWNYELGDGCPN---ICGWGNNERQIYTRDNHTV 70
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: A0A2N2ZEA4_9BACT (Laminarinase n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-13 TaxID=2013681 RepID=A0A2N2ZEA4_9BACT) HSP 1 Score: 71.6 bits (174), Expect = 2.210e-13 Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 55 ERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ 213
ER LVWE+NFDGN LD AVW GNGC CGWGNNE Q YT+ NH+++
Sbjct: 21 ERTLVWEENFDGNQLDTAVWNFELGNGCPHN---CGWGNNELQFYTDQNHRLE 70
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: UPI00146A82E7 (glycoside hydrolase family 16 protein n=1 Tax=Flavobacterium solisilvae TaxID=1852019 RepID=UPI00146A82E7) HSP 1 Score: 71.6 bits (174), Expect = 2.210e-13 Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 55 ERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQV 210
ER LVW++NF+GN+LD +VW GNGC CGWGNNE+Q YT+DNH++
Sbjct: 21 ERKLVWQENFNGNTLDTSVWNFELGNGCPNN---CGWGNNERQVYTKDNHEI 69
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: A0A7Y1YMH6_9FLAO (Glycoside hydrolase family 16 protein n=1 Tax=Eudoraea sp. TaxID=1979955 RepID=A0A7Y1YMH6_9FLAO) HSP 1 Score: 71.2 bits (173), Expect = 4.090e-13 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 64 LVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQV 210
L+WEDNFDG L+EA W G+GCDQG +CGWGNNE Q YT+ NH+V
Sbjct: 48 LIWEDNFDGTVLNEADWNFELGDGCDQG--ICGWGNNEPQLYTDTNHEV 94
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: UPI000428E119 (glycoside hydrolase family 16 protein n=1 Tax=Flavobacterium soli TaxID=344881 RepID=UPI000428E119) HSP 1 Score: 70.5 bits (171), Expect = 5.880e-13 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 55 ERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQV 210
+R L+WE+NFDG +LDE VW GNGC CGWGNNE+Q YT+DNH++
Sbjct: 20 KRKLIWEENFDGKALDEKVWNFELGNGCPN----CGWGNNERQLYTKDNHKL 67
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: A0A1K2IHY7_9FLAO (Glycosyl hydrolases family 16 n=1 Tax=Flaviramulus basaltis TaxID=369401 RepID=A0A1K2IHY7_9FLAO) HSP 1 Score: 70.5 bits (171), Expect = 6.090e-13 Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 58 RVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQV 210
+ LVWE+NFDGNSL+E W GNGC LCGWGNNE Q YT++NH+V
Sbjct: 22 QTLVWEENFDGNSLNEETWNFELGNGCPN---LCGWGNNELQLYTKNNHEV 69
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Match: A0A0A2LQS8_9FLAO (Laminarinase n=2 Tax=Flavobacterium TaxID=237 RepID=A0A0A2LQS8_9FLAO) HSP 1 Score: 70.5 bits (171), Expect = 6.300e-13 Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 55 ERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDGLCGWGNNEQQTYTEDNHQVQ 213
ER L+WE+NFDG+ L+E+VW G+GC +CGWGNNE+Q YT+DNH+++
Sbjct: 23 ERELLWEENFDGSELNESVWNFELGDGCPN---ICGWGNNERQVYTKDNHKLE 72 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16322.4581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16322.4581.1 >prot_Ecto-sp13_S_contig16322.4581.1 ID=prot_Ecto-sp13_S_contig16322.4581.1|Name=mRNA_Ecto-sp13_S_contig16322.4581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp MRWLSVFLVVVGIGMIPAERVLVWEDNFDGNSLDEAVWTLNTGNGCDQGDback to top mRNA from alignment at Ecto-sp13_S_contig16322:261..645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16322.4581.1 ID=mRNA_Ecto-sp13_S_contig16322.4581.1|Name=mRNA_Ecto-sp13_S_contig16322.4581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16322:261..645- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16322:261..645- >mRNA_Ecto-sp13_S_contig16322.4581.1 ID=mRNA_Ecto-sp13_S_contig16322.4581.1|Name=mRNA_Ecto-sp13_S_contig16322.4581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16322:261..645- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |