mRNA_Ecto-sp13_S_contig16266.4541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16266.4541.1
Unique NamemRNA_Ecto-sp13_S_contig16266.4541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16266.4541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16266contigEcto-sp13_S_contig16266:937..1645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.5589166-CDS-Ecto-sp13_S_contig16266:936..9691681462856.5589166-CDS-Ecto-sp13_S_contig16266:936..969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16266 937..969 -
1681462856.5696542-CDS-Ecto-sp13_S_contig16266:1446..16021681462856.5696542-CDS-Ecto-sp13_S_contig16266:1446..1602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16266 1447..1602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.579084-UTR-Ecto-sp13_S_contig16266:1602..16451681462856.579084-UTR-Ecto-sp13_S_contig16266:1602..1645Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16266 1603..1645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16266.4541.1prot_Ecto-sp13_S_contig16266.4541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16266 937..1602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16266.4541.1

>prot_Ecto-sp13_S_contig16266.4541.1 ID=prot_Ecto-sp13_S_contig16266.4541.1|Name=mRNA_Ecto-sp13_S_contig16266.4541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MSEEHTKLEQRPTEEEEEREKKEEEEDQEPSTPGSRERVGWLKRRTADNI
MKPDLGASKKAAE
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mRNA from alignment at Ecto-sp13_S_contig16266:937..1645-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16266.4541.1 ID=mRNA_Ecto-sp13_S_contig16266.4541.1|Name=mRNA_Ecto-sp13_S_contig16266.4541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=709bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16266:937..1645- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTATAGTTTCTAGTTTCGGATCAGATAGCCACACCCAAGGATGTCTG
AGGAGCACACCAAGTTGGAGCAGCGGCCTACGGAAGAGGAGGAGGAGAGA
GAGAAGAAGGAAGAGGAAGAGGATCAGGAGCCATCCACACCTGGAAGTCG
GGAGCGCGTCGGGTGGCTCAAAAGGCGGACGGCTGACAATATCATGAAAG
TGAGCAAGGTGATTCGGTACATGTGGAAAGGCTGCCTGCGTAGTACAGCA
CGTTGTCGTGCCTCAGTAGTGAGAACTAGCCACCCAGCCTGCGAAAATTG
TTCGACATGTGCTTCAAACCACATTCTTGGGTGTGCTATTTATGGTCTAC
TTTTCTTAGGCCTTGAGCTGGATATGAGTGCTATGGATGTATACAATATA
TTGACACGCGTTTTCAGAAACCCCGGCAGCGGGAATAGGCAAGGGCGAGT
TGTTAGAGCTAGGCCGGCAGAAAGAAAGCCGCTGGAAGAGACTTCCCGGA
GATAACTCCGGCGCCCGAGATCCGACCAGGCCGAACAAAAATCAGAGCGA
AAGATCCACCATCACTGCCGCCCCTTTCCGTGCATGGAGCGTTTAGTGGA
AGCCCTACAGAAACGAAGTTTAGCTCAGGAGTTTTTGATGACGAAACTCC
TCAATTCTTGACGTGTGACCGGACAGCCCGACCTCGGGGCGTCAAAGAAG
GCCGCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16266:937..1645-

>mRNA_Ecto-sp13_S_contig16266.4541.1 ID=mRNA_Ecto-sp13_S_contig16266.4541.1|Name=mRNA_Ecto-sp13_S_contig16266.4541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16266:937..1645- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGAGGAGCACACCAAGTTGGAGCAGCGGCCTACGGAAGAGGAGGA
GGAGAGAGAGAAGAAGGAAGAGGAAGAGGATCAGGAGCCATCCACACCTG
GAAGTCGGGAGCGCGTCGGGTGGCTCAAAAGGCGGACGGCTGACAATATC
ATGAAACCCGACCTCGGGGCGTCAAAGAAGGCCGCAGAG
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