mRNA_Ecto-sp13_S_contig1625.4535.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1625.4535.1
Unique NamemRNA_Ecto-sp13_S_contig1625.4535.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1625.4535.1 vs. uniprot
Match: D7FYQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ2_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.120e-24
Identity = 65/96 (67.71%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:  565 IDVSMARRVEIDAQNAELQVVVDXXXXXXXXXXXXXXA-----VKNEVEDLSTRLETRDKERKEQELLREMLDSAHMVFRRESPEEAASEEVRSVR 837
            IDVSMARRVEIDAQNAELQ+VVD                    VK EVEDLSTRLETRDKERKEQELLREMLDSAHMVFRRESPEE  +  ++  R
Sbjct:    8 IDVSMARRVEIDAQNAELQLVVDEADSRKRQLQEQVGRLQVDEVKTEVEDLSTRLETRDKERKEQELLREMLDSAHMVFRRESPEEVGATSLQRSR 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1625.4535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYQ2_ECTSI1.120e-2467.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1625contigEcto-sp13_S_contig1625:10185..14743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size891
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004310.1
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1625.4535.1prot_Ecto-sp13_S_contig1625.4535.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1625 10185..14743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462856.0747175-CDS-Ecto-sp13_S_contig1625:10184..102931681462856.0747175-CDS-Ecto-sp13_S_contig1625:10184..10293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 10185..10293 +
1681462856.0871835-CDS-Ecto-sp13_S_contig1625:11073..113211681462856.0871835-CDS-Ecto-sp13_S_contig1625:11073..11321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 11074..11321 +
1681462856.0970654-CDS-Ecto-sp13_S_contig1625:11862..118881681462856.0970654-CDS-Ecto-sp13_S_contig1625:11862..11888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 11863..11888 +
1681462856.106517-CDS-Ecto-sp13_S_contig1625:12181..122571681462856.106517-CDS-Ecto-sp13_S_contig1625:12181..12257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 12182..12257 +
1681462856.115516-CDS-Ecto-sp13_S_contig1625:12560..126171681462856.115516-CDS-Ecto-sp13_S_contig1625:12560..12617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 12561..12617 +
1681462856.1239762-CDS-Ecto-sp13_S_contig1625:12869..129671681462856.1239762-CDS-Ecto-sp13_S_contig1625:12869..12967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 12870..12967 +
1681462856.1318688-CDS-Ecto-sp13_S_contig1625:13429..134841681462856.1318688-CDS-Ecto-sp13_S_contig1625:13429..13484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 13430..13484 +
1681462856.1398716-CDS-Ecto-sp13_S_contig1625:13859..139341681462856.1398716-CDS-Ecto-sp13_S_contig1625:13859..13934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 13860..13934 +
1681462856.1487923-CDS-Ecto-sp13_S_contig1625:14216..142791681462856.1487923-CDS-Ecto-sp13_S_contig1625:14216..14279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 14217..14279 +
1681462856.1578233-CDS-Ecto-sp13_S_contig1625:14659..147431681462856.1578233-CDS-Ecto-sp13_S_contig1625:14659..14743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1625 14660..14743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1625.4535.1

>prot_Ecto-sp13_S_contig1625.4535.1 ID=prot_Ecto-sp13_S_contig1625.4535.1|Name=mRNA_Ecto-sp13_S_contig1625.4535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MTAATLTGGATGAAPSPLRTRSTSSRKGLGKISRNPANENPRPLGGTRGG
GGTNNITESRKHEAFESGNPRDAYSSVSHLKGNLDSLSFAIGLREGEGQE
GALERLLPMLKIQPRPAGDANRRGDKTREKGYLECEHPDCIVREEKIKKL
QELIEEEQEGLERLTFEIDSLHERHTRATAEMETLDDQIDVSMARRVEID
AQNAELQVVVDEADSRKRQLQEQVDAVKNEVEDLSTRLETRDKERKEQEL
LREMLDSAHMVFRRESPEEAASEEVRSVRDLPALLDPAKAEAASML*
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mRNA from alignment at Ecto-sp13_S_contig1625:10185..14743+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1625.4535.1 ID=mRNA_Ecto-sp13_S_contig1625.4535.1|Name=mRNA_Ecto-sp13_S_contig1625.4535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1625:10185..14743+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGCTACGCTAACCGGGGGAGCCACGGGCGCCGCTCCCTCTCC
GCTCCGAACCCGATCGACATCCTCGCGGAAAGGGCTCGGAAAGATATCAC
GAAATCCCGGTACGCGCCCGATACCCCTCAGTCTGTCTGTAGCTCAAGCC
CTTCTAAGCAGCTGCCGTATAAGCACCTACTTTTGCGATCATCTCCTGTC
CAGAAACGCAATGCATACGTCATTATCAGCTGCACCGTAGGTGCAAGTAC
AAGGAACCCTTTGAGATTGTATGAAAGAACGCCCCGAAAGAATGTCCGAG
AGCGCTTTCTTTCTCACAATTCGGAAGAAACAGGTGCCCCCCCTTGCTTT
TTGCTTCCAAGCATCGGACGAGGATGTCCGTATCTCATGTCCAATACCGC
TGATATGTCGATATGCGATAGCTCTTCCTTGTCGAGAGCCCGTCCTACAT
GCAACTGCCCGAGAGGTGCAATAGACTGCATGAAGCTCGGCACCTCGATC
GGCTCCTCCTAGGCGTGCAAATACATAATGATGTGCACTCTCCAACGTAC
GCTGGGGATAAAGGGCGGCGGAATAACATGAGTCCTATTCTACGTTGTGT
TCTGCGTCGTTTCAATCGTTGAGTGTTGTTACCGTGCTAAGACTAGAGGC
CAGGTGTTGCAAGCACAGTGGAACGAACACAAACGCACCTCTGCATCCGT
CAACCTCCTTGTACCTTACGGAGGATACTCGTTCGTTGTACAGTAGTAAG
GCGTGGGGGGTCGCCTTGCACTGCCATCGAAGGAAGGTGGATTTTGAAGG
GAGTCAAGCAATACTGGTTGTGATTTGCTACGTGTATATACATGCTCACG
CACCCTCCGCCGAAACATGCATTTCGTCCTTACATTCAGCCAACGAAAAT
CCTCGCCCACTGGGTGGGACAAGAGGCGGAGGCGGCACCAACAACATCAC
AGAGAGCCGCAAGCACGAGGCCTTTGAGAGCGGCAACCCCAGGGATGCCT
ACTCCAGCGTGTCGCACCTCAAGGGCAACCTTGATTCGCTCTCGTTCGCC
ATCGGACTGAGAGAAGGCGAGGGTCAGGAAGGAGCCCTTGAGAGGCTGTT
GCCTATGCTAAAAATTCAGCCGCGGCCGGCTGGAGATGTGCGTGTTCAGA
TGGGGATGGTTCAAGAGAGGGAGTGGTTATGCACGAAGCACAGCGGTCAT
GTTGACAAAAATGCTCCCACAACCGCCGTAGGAAGTGTTGAAAAGTTCAC
GAGTGGAGTTAGCAACGGCTCTAAGTTCTGCAAGACACAAGTCGAACGAA
CTAGTTGCGTCCTACATGGGAGAGGAACGATACAGTAAAGGGCTCGAGAG
CTTGAGCGGGACGGGCAACCGGGTAGCATCTTACGCCAAGCTTCTCCTCC
TTTCACGCTGCAGTACCGACACAGCGAAGCTGGGCAAACCACAGGACGAA
TCATGTCACGCGCGTCAAATGATAGCTGTGGAATTGTCTTTCTTCATGGA
AACATTCTCTCCAGAGGTACATGCTAAACCTGCACCAACGGTGCACATGT
TGACGTTTATGGGTCGCTTTAACGTATCATCCCACCCTCTCTTTCGCCGC
ACTTTCCCATCACATATACGCGAATCTACGGTAACCAACACCACCGATTT
AATCGGCTCTTGTGGTGGGCTGCGACAGGCTAATCGAAGGGGCGACAAAA
CCAGGTAAAGGCGGCGTCGGTTTGTTTTGTGGCATCGTGTGTTCTCAGTT
AAGGCGCTTCTTTTTGTTGTCGGGCGTGCGGACCGACGATTGCTCATGTG
CTCCTGCTCAACTCAACGCCATCTGGGCTAGCCCAGAACAAGACTTCAGC
CAAGACGTTGTGCCGTGACCAGTCGTCACGTGCGCCAACGCCCTTCCAGA
CGATCCTGTTCTTTGGCGGTTCACGTAGCCGCTGGCCGTTGTTTTGTCCG
AACAGGTTGTGTTGACATTTCTCGATCGATCTTTTTCGCGCGTACAGAGA
AAAGGGATACCTGGAGTGCGAACACCCGGATTGCATCGTGCGAGAGGAGA
AGATCAAGAAGCTGCAGGAATTGGTACGTGCGTCTTGGGTTGAAGGTCGA
TCTGGCGCTTTCGTTTCTGCCATGCCGTTTTTAAATTTTCCATTTCCTCT
GCGTCTTACCGTGTAGCTCCACCTCGTCTTTTTATCCCCGGTGGCACCTC
CTCGTCACCGAGATCACTCTTAAGGCTTGGGCGGTGGGGCCTGAAAACAC
GGGGGGGCGAAGTTCGCTCCTGGTGTTTCGCGTCTTTCCTCGTCCGCTGG
CACGCTGAAGAGTCACCTCTATGTTTTTCCTCTGACCATTCGTTTATGTT
TTTGTTTGTTGTGGTGGGGGGCGCAGATCGAGGAGGAGCAGGAAGGGCTT
GAGCGGCTGACGTTTGAGATTGACTCCCTGCACGTGAGAACCCACACTTT
TCTGTGTCTCTGCAAGGACCATGTGATGAGATTCACCGGTAAAGTGCCTG
CAACCATCGCCCTGTCGTGAGGAGCCGTCGGGCGCTGCTATCCACGAAAC
ACGAGCACCCCCCACCAAAGCTAGAAAATCACGATAGAGAGTGGAGAATA
ACGCCGAACTACCAACGACCACCCGCTGACGCACAAAAACCGAAGATTTT
GACGCCATCTCGTTTCCCCCCTTGGCGACGGACAGGAGCGACACACTCGC
GCCACGGCAGAGATGGAGACACTCGACGACCAAATTGATGTGTCTATGGC
GAGGAGGGTCGAAATCGATGCCCAGAATGCCGAGTGAGTTCGGTGCTCTT
TCACCTACTTTTATTGTGCATTGTTTCGAGATTTCGGCAGCACTTGAATT
GGGCCTAGGATGCGGAGTTGTGCCCGTCGAAACGAATGCTGCCATCAGGC
AACAGACATCACCTTGTCGTCCAAGCGCCTATCGCGTCGTCTTTGACTGC
TTCTGCTGCTGCTACCAGATGTCCCTTCTTGCGCACCCGAATCGACAATC
CAAGATTCCACGAAAATCTCGCCCCGACTCCTGTCTTTTATGGTGGATGC
CTTGCCTGCCGAATACCGGCAACATAGCCTATACCTCTACGACGGGACAG
AGGAATGAGGCCCAAGTCACCGGGAACAAAACAAGAAACCACACGTGTGT
CGATGATTTTTTCCAGACAGTGTAATTCTTGCCGTGTTCCACGTATCTGT
TTCCGTGCGGCGGTTCCGTCGCTTCGCGTTCTCTCCACACCGCAGGCTTC
AGGTTGTCGTTGACGAAGCGGACTCTCGAAAACGCCAGCTACAGGAGCAG
GTCAGGCCTTGAGTTGCGTCGTCATCTGGGCGGTGCGTGTAGGAGAATAT
GGACGCGAAACGCAAAACGATCATACGTGTCGAACCTGGAATGAATGCTG
TCGCTCCGGAACGACCAAAACGTATACGATCTACTCTATTATTAGTGCCT
ACATAGAGTCGGTCGTGGACTTGCTTTGACTTCAGGTGAGTTGAAACAAC
GAAGTGTTTTTCCCGACGCTTTGTACGCATCGCAAACCTTTCACTGTGAA
GATTCCAACCCATCCCCTTCGACTGTAATTAGTTATATCTCGAACGGGTA
GTCTATCTTTGTTTGTATTCATAGTCCTATATTTGCCTTAAAACGTCGTG
AATGTATCATTGTGTGCGCTGCAAGGTGGACGCGGTAAAGAACGAAGTGG
AGGACCTGTCCACGCGGCTCGAGACCAGAGACAAAGAGCGCAAGGAGCAG
GTGGGCAAGCCCGTTGGTTACTATGGTGGGCTGTGGCGCGGGCACGTCGT
AATGACAGAAAGCACCGAGACGTCGCGGTCTCGGTTCCTCGAGAAAGCAT
AGGCAGACCTGCGTGCAGGAGGAAAGCAGGAGTGCGTGCGTACTCCCACA
CACACACGCTGGTTTCAATATGACCGTCAAGTCAGGCTTTTGTGGCTCAA
GAGTAAACAACGCTCTCCTCGTCGCCGCCCGTCAATATTTTCCGTGCTTA
CCACCGCCACGCTCTCTTGCTTGTGTGCGCAGGAGCTCCTCAGGGAAATG
CTGGACAGCGCCCACATGGTTTTCCGACGAGAGTCGCCGGAAGAGGTGAG
GGCAACCTCTCTACGAAAATCCCGAAAAATGAGGAAAGATTGCAGCCAAG
GGGCCTTGTCGGAAGGCAACAAAAGTATTCAGGCTGCACCTCGTAGTCTC
AACAGGAATGAATGTAGTAGTCGGCTGAGCCTCGTGTCAGCAACCTCGGA
CGTTACGCAGTCCTCGGGAACGTCCGTTCGAGAGGAATACTCCACTGCAG
TGTAGTAGGTTTTGAAATGACCGAGTAGGCAAGCCGTGTTGTCCGAATGT
TGGGCGACGGTACTACGCAACGAGGACGCTCGTTCCATCCCACGCGATTG
CAGTAGGGCCGTCTTTGTTCACGCCCACCTCACACGTTCCGAACCACCAC
CACGCTTCCTTTCGCATTTCCCCAGGCGGCGTCGGAAGAGGTTCGGTCGG
TTCGGGATCTACCTGCCCTTCTCGATCCCGCAAAGGCAGAGGCGGCAAGC
ATGCTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1625:10185..14743+

>mRNA_Ecto-sp13_S_contig1625.4535.1 ID=mRNA_Ecto-sp13_S_contig1625.4535.1|Name=mRNA_Ecto-sp13_S_contig1625.4535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1625:10185..14743+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGCTACGCTAACCGGGGGAGCCACGGGCGCCGCTCCCTCTCC
GCTCCGAACCCGATCGACATCCTCGCGGAAAGGGCTCGGAAAGATATCAC
GAAATCCCGCCAACGAAAATCCTCGCCCACTGGGTGGGACAAGAGGCGGA
GGCGGCACCAACAACATCACAGAGAGCCGCAAGCACGAGGCCTTTGAGAG
CGGCAACCCCAGGGATGCCTACTCCAGCGTGTCGCACCTCAAGGGCAACC
TTGATTCGCTCTCGTTCGCCATCGGACTGAGAGAAGGCGAGGGTCAGGAA
GGAGCCCTTGAGAGGCTGTTGCCTATGCTAAAAATTCAGCCGCGGCCGGC
TGGAGATGCTAATCGAAGGGGCGACAAAACCAGAGAAAAGGGATACCTGG
AGTGCGAACACCCGGATTGCATCGTGCGAGAGGAGAAGATCAAGAAGCTG
CAGGAATTGATCGAGGAGGAGCAGGAAGGGCTTGAGCGGCTGACGTTTGA
GATTGACTCCCTGCACGAGCGACACACTCGCGCCACGGCAGAGATGGAGA
CACTCGACGACCAAATTGATGTGTCTATGGCGAGGAGGGTCGAAATCGAT
GCCCAGAATGCCGAGCTTCAGGTTGTCGTTGACGAAGCGGACTCTCGAAA
ACGCCAGCTACAGGAGCAGGTGGACGCGGTAAAGAACGAAGTGGAGGACC
TGTCCACGCGGCTCGAGACCAGAGACAAAGAGCGCAAGGAGCAGGAGCTC
CTCAGGGAAATGCTGGACAGCGCCCACATGGTTTTCCGACGAGAGTCGCC
GGAAGAGGCGGCGTCGGAAGAGGTTCGGTCGGTTCGGGATCTACCTGCCC
TTCTCGATCCCGCAAAGGCAGAGGCGGCAAGCATGCTCTGA
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