mRNA_Ecto-sp13_S_contig16157.4486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16157.4486.1
Unique NamemRNA_Ecto-sp13_S_contig16157.4486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16157.4486.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 9.370e-68
Identity = 118/140 (84.29%), Postives = 129/140 (92.14%), Query Frame = 3 
Query:   69 SKSMWVERRASFSRQTEGQDVIDAVNVDLDIPLVSEGRERKIIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLTAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVASAVKSD 488
            S+++ V + A  + + +  DVIDAVNVD+DIPLVSEGRER+ IEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETL AAERKERM+ELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVA+AVKSD
Sbjct:   28 SQALDVIKNAMLNDKQK-HDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVAAAVKSD 166
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BLAST of mRNA_Ecto-sp13_S_contig16157.4486.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.200e-67
Identity = 113/121 (93.39%), Postives = 118/121 (97.52%), Query Frame = 3 
Query:  126 DVIDAVNVDLDIPLVSEGRERKIIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLTAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVASAVKSD 488
            DVIDAVNVD DIPL+SEGRER IIEKFVDQAVPAMEPSLSALMPPAY+DLVKV LDETLTAAERKERMSELLRGELAVPLS+QLNERVDCSYIPESMEGKVLK+VAEKMVNEIVA+AVKSD
Sbjct:    9 DVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIVAAAVKSD 129
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BLAST of mRNA_Ecto-sp13_S_contig16157.4486.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 3.410e-61
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 3 
Query:  126 DVIDAVNVDLDIPLVSEGRERKIIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLTAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIVASAVKSD 488
            DVIDAVNVD DIPL+SEG ER+ IE FVDQAVPAMEPSLSALMPPAYVDLVKV LDETLTAAERKE MS LLRGELAVPLS+QLNERVD SYIPESMEGKVLK+VAEKMVNEIVA+AVKSD
Sbjct:   64 DVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIVAAAVKSD 184
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BLAST of mRNA_Ecto-sp13_S_contig16157.4486.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.480e-35
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = 3 
Query:  129 VIDAVNVDLDIPLVSEGRERKIIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLTAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 467
            ++  VN DLDIPL+SE RER++IEKFVD+ +P +EPS+ A+MP  YV  +K  LDET T   R++ +S LLRGEL+ PL+RQLNERVDCS IPE  EGKVLK+V+ K+++E V
Sbjct:   10 MVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFV 122
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BLAST of mRNA_Ecto-sp13_S_contig16157.4486.1 vs. uniprot
Match: A0A7S4G473_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G473_9EUGL)

HSP 1 Score: 90.1 bits (222), Expect = 4.820e-18
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 3 
Query:  129 VIDAVNVDLDIPLVSEGRERKIIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLTAAERKERMSELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNE 461
            V+  VN  ++IP +SE  E  +I + VD    AMEPSL A+MPP YV+++K+ L+E L+A E+   +S L +  L  PL+  LNERVD   +PESME   L+   E+M++E
Sbjct:   18 VVAKVNNSMNIPFMSESSEASLIRQAVDTLNGAMEPSLLAIMPPDYVEIIKLCLNEKLSANEKLPLISALFKKNLRDPLAAALNERVDIPVLPESMEEWFLEKAVEEMIDE 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16157.4486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7I3_ECTSI9.370e-6884.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA3_9PHAE2.200e-6793.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD72_9PHAE3.410e-6189.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I4_ECTSI5.480e-3559.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4G473_9EUGL4.820e-1844.14Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16157contigEcto-sp13_S_contig16157:247..2901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1194
Hectar predicted targeting categoryother localisation
Exons4
Cds size414
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16157.4486.1prot_Ecto-sp13_S_contig16157.4486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16157 950..2824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.3920166-UTR-Ecto-sp13_S_contig16157:246..9491681462852.3920166-UTR-Ecto-sp13_S_contig16157:246..949Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16157 247..949 -
1681462852.453546-UTR-Ecto-sp13_S_contig16157:2824..29011681462852.453546-UTR-Ecto-sp13_S_contig16157:2824..2901Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16157 2825..2901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.401361-CDS-Ecto-sp13_S_contig16157:949..11241681462852.401361-CDS-Ecto-sp13_S_contig16157:949..1124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16157 950..1124 -
1681462852.41741-CDS-Ecto-sp13_S_contig16157:1498..15991681462852.41741-CDS-Ecto-sp13_S_contig16157:1498..1599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16157 1499..1599 -
1681462852.4310288-CDS-Ecto-sp13_S_contig16157:2119..22091681462852.4310288-CDS-Ecto-sp13_S_contig16157:2119..2209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16157 2120..2209 -
1681462852.44236-CDS-Ecto-sp13_S_contig16157:2776..28241681462852.44236-CDS-Ecto-sp13_S_contig16157:2776..2824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16157 2777..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16157.4486.1

>prot_Ecto-sp13_S_contig16157.4486.1 ID=prot_Ecto-sp13_S_contig16157.4486.1|Name=mRNA_Ecto-sp13_S_contig16157.4486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MWVERRASFSRQTEGQDVIDAVNVDLDIPLVSEGRERKIIEKFVDQAVPA
MEPSLSALMPPAYVDLVKVVLDETLTAAERKERMSELLRGELAVPLSRQL
NERVDCSYIPESMEGKVLKIVAEKMVNEIVASAVKSD*
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mRNA from alignment at Ecto-sp13_S_contig16157:247..2901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16157.4486.1 ID=mRNA_Ecto-sp13_S_contig16157.4486.1|Name=mRNA_Ecto-sp13_S_contig16157.4486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2655bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16157:247..2901- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTACCGGAGTCCGCTTACACACATCGCAAACGCTGGACGTGATCAAGA
CCACCATGCTGAACGACAAGCAAAAGCATGTGGGTTGAACGTAGGGCTTC
GTTCAGCCGACAGACAGAGGGTCAGGTATTGGCGCTTGTCCTTGGAGCGA
GCTGGATTATATGTGGTACGACTAGCGTGTAGCAGAAACGAATACAAATT
GTGTGAGCAAGAGCACCGGGCGGAGCCGACGCAGGGGGGGGCGGGGTCGC
CAGGTTAGCCGGTTCAGGAGATGAAGCAACTTGGTGGTTGGGAGTCTACG
AAAGTTGACGTCTTTGCGAGCGATGGGGCGAGTTCTCTTGCCCTTGGCGT
TGTCTTTTTCTCTAGTTGTTCGGGTAAGGGACTTGACCACCGAAGGTTTC
CGTATTGTTGAGCAGTTTGGAATAGGGCATACAGGTTAAGAGGTGCAACG
ACCGCTCATGCAAAGGCAACGGCAAACAACCAACACTCCAGTAACATCAG
TTCTATCTGTGGGTCTCGTAATCGATCTTCCTGTCATCAATCCCTCATTG
CCCCTCATGTTTCCCCACTTGAGAATCGTGCACAGTAGGGTAGGCCACCC
CAAACCTATCGAATGGAGATCCCGATGAACAGGATCATATCAGTCTTCTG
TGCCACCAACCCTCCGCCTGTCCAAAATGGCATTTATTCCAGGATGTGAT
CGACGCCGTCAATGTGGATTTGGACATCCCTTTGGTCTCGGAGGGAAGGG
AAAGGAAAATTATCGAGAAGTTTGTCGACCAGGTACCCAAAGAAGTAGCC
GTAGGACGTGTAGAACACCGCATGGACAAAGCCAAATGCTTTTTCTAAGA
CCTGGAGGCGCATAGAATCGAAAACAAGACCGGAGTACCAAACGAAAAAG
TCATTTGCAAGGCAGGCTCAGGCGCAGTTTACCGACAATGCGACTTCAAG
TATGTAGGTTATCCTTGGCGGGGGCAACGAAACACGAAATTGAGGCCTGA
CCTGATTTTGACGTTTCTCCCCAGCGGGCGGTTACTGTTGTAAGTGGCTC
TAAGACTGTTACGAACTGACAGGGCGAGCGCAGAAATTTGCGACCCCTCT
GGTGTCTGACCCCAATGCCATCGACGTGGTGTAAGGAGCACGAGGTTCAA
GCAAAACATGAGACATGTGCAACTCCCTCCCTTCATGTTGGTGGGAAGCG
ACTTGCTTGCCACACGTATCATCAGGCAGTCAAACTCGCCTTCCACTGCG
TCCAACATGTCGTGCGACCATCATATTGTTTACCGTCACTACATGTATGT
AGGCGGTGCCCGCGATGGAACCATCGCTTTCGGCGCTCATGCCACCCGCG
TATGTGGATCTGGTCAAGGTCGTGCTGGACGAAACCTTGACGGCCGCCGA
AAGGTGAGCTAGCTCAACACATACATGTATCCGCTCCTCGTTCGCGACTG
CTTGAGTTCCAAACGAACAAGTAGACAAGACACGTTTATGAGATTCCATG
ACCACAAAAGTCTACCAGCAAGCATGCTCGTGCATGCACACGCTCTCTGG
GTGAGTTATTCCCGGCCAGGTTGAAAACGTTATTTAACCGCCGCTGGTCG
ACACTATACCAGGGAAGACGTTTCCCACCACCCCGGTGGGTGTACTCCAA
CGCCGTGCAATAATGGCCTCATCCCAAGTATTTCGAGGGGGCAACTACAG
TAGCTACATCGCACAATCGCCCATCATCTACACGCGCATGGGCTCGCGCA
CGATTGATTGCTGTGTAAACCGACCAGGAAGGAACGCATGTCCGAGCTGC
TACGTGGCGAGCTGGCCGTTCCGCTGTCGAGGCAACTCAACGAGCGCGTG
GACTGTTCGTACATCCCGGAGAGCATGGAGGGAAAGGTTCTCAAGATCGT
GGCCGAAAAGATGGTCAACGAAATCGTCGCGTCGGCCGTAAAATCGGACT
AGGGAGGCCAGGCAGAATTGAGTGACCACGCCGGCAAGCTTGGCTTCGTC
ATTCTCGTTGACCAAGGCAGCATTCATGTTGGTTTGGTGTAGATTTTACC
ATTTGTGTCGACGAGACAACAATGGGAGTGATAGCCACGTGCGGGCCTAC
TCTCAAGAAGGACGAAGGGGGGCCGAGAAACACCTCGGCACCTTCCCCGT
ACAAGAAGGCCTTATAGAAGAAACTCCAAGCCTGCGAGGACGCGGTAACC
GTACTGTCGTTTGGCCACGCGAGTGGGCCATGAAGGATAATCACATTTCT
TTGTGACGACGGAGGTTTAGTCGACATGTTTTGGTCTCTATCGGCTGCCT
ATACCATCCTCCGTAGAGTTAGCCGGGGGTACGAGCTGACGAGGCAGGCA
CCCTTTTATTGAGGCTACCGTGGTACGTTTCATGGGATGTTCCGTGACGT
TACTGTGGGCTGCCCACGAATCGCCGCAGGGCTAGGGCCACCCCACAGGG
CCGACATAGGCCGTCCATAGCGGCCGCAGAAAGGGACTGATCGCGACCCC
TGGCCCCTCTTGGGCGGCCCACCGAACCCATTGTGGGGGGGATTCGTGAG
GTCCCTTTGTCTTTTTGCACTCGCTGAGCATCCTGGTCGCCCGTGGTTTG
GCGGTTGCGGACAATGGGCGGCCCGTAGGTCGCTTGCTCGAAGCGTTTGT
ATGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16157:247..2901-

>mRNA_Ecto-sp13_S_contig16157.4486.1 ID=mRNA_Ecto-sp13_S_contig16157.4486.1|Name=mRNA_Ecto-sp13_S_contig16157.4486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16157:247..2901- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGGTTGAACGTAGGGCTTCGTTCAGCCGACAGACAGAGGGTCAGGA
TGTGATCGACGCCGTCAATGTGGATTTGGACATCCCTTTGGTCTCGGAGG
GAAGGGAAAGGAAAATTATCGAGAAGTTTGTCGACCAGGCGGTGCCCGCG
ATGGAACCATCGCTTTCGGCGCTCATGCCACCCGCGTATGTGGATCTGGT
CAAGGTCGTGCTGGACGAAACCTTGACGGCCGCCGAAAGGAAGGAACGCA
TGTCCGAGCTGCTACGTGGCGAGCTGGCCGTTCCGCTGTCGAGGCAACTC
AACGAGCGCGTGGACTGTTCGTACATCCCGGAGAGCATGGAGGGAAAGGT
TCTCAAGATCGTGGCCGAAAAGATGGTCAACGAAATCGTCGCGTCGGCCG
TAAAATCGGACTAG
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