mRNA_Ecto-sp13_S_contig16154.4485.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16154.4485.1
Unique NamemRNA_Ecto-sp13_S_contig16154.4485.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A6H5JEA3_9PHAE (GOLD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA3_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.220e-28
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:  403 IQLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            IQLKNEAQQMLREAD SKESE EYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSK+LV
Sbjct:  248 IQLKNEAQQMLREADQSKESETEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKRLV 314
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: D8LDF7_ECTSI (Transmembrane emp24 protein transport domain containing 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.030e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3 
Query:  501 RGLVVACIAGGDPDGDGVLPSATPQEFLQVQAARLAH 611
            RGLVVACIAGGDP GDGVLPSATPQE L+VQAARLAH
Sbjct:  269 RGLVVACIAGGDPGGDGVLPSATPQELLRVQAARLAH 305
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A2I436_MACHI (Putative transmembrane emp24 domain-containing protein 9 n=1 Tax=Maconellicoccus hirsutus TaxID=177089 RepID=A2I436_MACHI)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-7
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL+ +  Q++RE +  +  E ++       N  V WW +SQVV+L+ MG++Q+RHLKSFF++K+LV
Sbjct:  153 QLQGQVDQIMREQNYQRYREEKFRSTSESTNQRVFWWSISQVVVLVCMGFWQMRHLKSFFEAKKLV 218
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A5B7DF65_PORTR (Transmembrane emp24 domain-containing protein eca n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DF65_PORTR)

HSP 1 Score: 62.0 bits (149), Expect = 1.760e-7
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL ++ +Q+ +E +  +  E  + +     N  VLWW V QV+IL+AMG++Q+RHLK+FF++K+LV
Sbjct:  109 QLLDQVEQITKEQNYQRYREERFRQTSDSTNQRVLWWSVGQVIILLAMGFWQMRHLKTFFEAKKLV 174
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A1D2N005_ORCCI (Transmembrane emp24 domain-containing protein eca n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2N005_ORCCI)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-7
Identity = 27/66 (40.91%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL ++ +Q+ +E +  +  E  + +     N  VLWW ++Q V+L++MGY+Q+RHLKSFF++K+LV
Sbjct:  153 QLLDQVEQITKEQNYQRYREERFRQTSESTNQRVLWWSIAQTVVLLSMGYWQMRHLKSFFEAKKLV 218
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A0P4WKA8_SCYOL (GOLD domain-containing protein n=2 Tax=Portunidae TaxID=6757 RepID=A0A0P4WKA8_SCYOL)

HSP 1 Score: 62.0 bits (149), Expect = 4.010e-7
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL ++ +Q+ +E +  +  E  + +     N  VLWW V QVVIL+ MG++Q+RHLKSFF++K+LV
Sbjct:  156 QLLDQVEQITKEQNYQRYREERFRQTSDSTNQRVLWWSVGQVVILLGMGFWQMRHLKSFFEAKKLV 221
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: UPI0012D39F19 (transmembrane emp24 domain-containing protein eca n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D39F19)

HSP 1 Score: 61.6 bits (148), Expect = 5.090e-7
Identity = 27/66 (40.91%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL N+  Q+ +E +  +  E  + +     N  VLWW ++QV++L+AMG++Q+RHLK+FF++K+LV
Sbjct:  152 QLLNQVDQITKEQNYQRYREERFRQTSESTNKRVLWWSLAQVIVLVAMGFWQMRHLKTFFETKKLV 217
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A481SXA5_9HEXA (Glycoprotein 25l n=2 Tax=Isotomidae TaxID=36141 RepID=A0A481SXA5_9HEXA)

HSP 1 Score: 61.2 bits (147), Expect = 6.880e-7
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL ++ +Q+ +E +  +  E  + +     N  VLWW + Q V+L++MGY+Q+RHLKSFF++K+LV
Sbjct:  152 QLLDQVEQITKEQNYQRYREERFRQTSESTNQRVLWWSIIQTVVLLSMGYWQMRHLKSFFEAKKLV 217
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BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A444TQI9_ARMVU (Transmembrane emp24 domain-containing protein eca (Fragment) n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TQI9_ARMVU)

HSP 1 Score: 59.7 bits (143), Expect = 7.650e-7
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL ++  Q+ +E +  +  E  + +     N  VLWW + QV+IL+ MG++Q+RHLKSFF++K+LV
Sbjct:   91 QLLDQVDQIAKEQNYQRYREERFRQTSENTNQRVLWWSIGQVLILVGMGFWQMRHLKSFFEAKKLV 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Match: A0A5N5TGN7_9CRUS (Transmembrane emp24 domain-containing protein eca n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5TGN7_9CRUS)

HSP 1 Score: 59.7 bits (143), Expect = 7.810e-7
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  406 QLKNEAQQMLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKSFFKSKQLV 603
            QL ++  Q+ +E +  +  E  + +     N  VLWW + QV+IL+ MG++Q+RHLKSFF++K+LV
Sbjct:   92 QLLDQVDQIAKEQNYQRYREERFRQTSENTNQRVLWWSIGQVLILVGMGFWQMRHLKSFFEAKKLV 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16154.4485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA3_9PHAE1.220e-2895.52GOLD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LDF7_ECTSI7.030e-1091.89Transmembrane emp24 protein transport domain conta... [more]
A2I436_MACHI1.150e-742.42Putative transmembrane emp24 domain-containing pro... [more]
A0A5B7DF65_PORTR1.760e-742.42Transmembrane emp24 domain-containing protein eca ... [more]
A0A1D2N005_ORCCI2.830e-740.91Transmembrane emp24 domain-containing protein eca ... [more]
A0A0P4WKA8_SCYOL4.010e-743.94GOLD domain-containing protein n=2 Tax=Portunidae ... [more]
UPI0012D39F195.090e-740.91transmembrane emp24 domain-containing protein eca ... [more]
A0A481SXA5_9HEXA6.880e-740.91Glycoprotein 25l n=2 Tax=Isotomidae TaxID=36141 Re... [more]
A0A444TQI9_ARMVU7.650e-740.91Transmembrane emp24 domain-containing protein eca ... [more]
A0A5N5TGN7_9CRUS7.810e-740.91Transmembrane emp24 domain-containing protein eca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16154contigEcto-sp13_S_contig16154:450..3555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2011
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionGOLD
Ec32 orthologEc-15_000790.1
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.322871-UTR-Ecto-sp13_S_contig16154:449..8781681462852.322871-UTR-Ecto-sp13_S_contig16154:449..878Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16154 450..878 +
1681462852.3585694-UTR-Ecto-sp13_S_contig16154:2150..35551681462852.3585694-UTR-Ecto-sp13_S_contig16154:2150..3555Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16154 2151..3555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462852.3382514-CDS-Ecto-sp13_S_contig16154:878..9771681462852.3382514-CDS-Ecto-sp13_S_contig16154:878..977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16154 879..977 +
1681462852.3481562-CDS-Ecto-sp13_S_contig16154:2072..21501681462852.3481562-CDS-Ecto-sp13_S_contig16154:2072..2150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16154 2073..2150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16154.4485.1prot_Ecto-sp13_S_contig16154.4485.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16154 879..2150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16154.4485.1

>prot_Ecto-sp13_S_contig16154.4485.1 ID=prot_Ecto-sp13_S_contig16154.4485.1|Name=mRNA_Ecto-sp13_S_contig16154.4485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MLREADLSKESEMEYHKLLLQLNHEVLWWPVSQVVILMAMGYYQVRHLKS
FFKSKQLV*
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mRNA from alignment at Ecto-sp13_S_contig16154:450..3555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16154.4485.1 ID=mRNA_Ecto-sp13_S_contig16154.4485.1|Name=mRNA_Ecto-sp13_S_contig16154.4485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16154:450..3555+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCAGTTTCATCCTTGTGAAACGTAGCCTGGGCCGGCGAAAAGCCGTCA
TATCGCCGCGTCCCGGCAGCATTGTAGGGAAGACCGCCTTCACGAAAAAT
GAGTTTTATCAGGAAATAGGACAGGGAGGAGGAACGCATGCCCTAACCAA
CCCTAGCCCAACCTCCTCATTTGCGTACTTCATCCAACGTATTATCTAAA
ACGAAAGAACCGGCGAGCGCTACTCCGGCTGTGTAAGGATGTGAGGTCAG
TGGTCTAACTACTAAGGCATGCGTTTACATGAGTACACCCTCCCCTTATT
CTCCGTGCTCTCGAGGACGCGTCGTCAGTGGTCTAATAGCTAAGGCATGC
ATTTACACGATTACACCCCCCGCCTCCCCGTGACCAAACGGTCGTCGAGT
AGATCCAGCTGAAGAACGAAGCCCAGCAGATGCTCCGCGAGGCGGACCTG
TCGAAGGAGTCGGAGATGGAGTACCACAAGCTTCTCCTGCAGCTCAACCA
CGAGGTCTTGTGGTGGCCTGTATCGCAGGTGCGTCGTGAGACGTTTCTTG
TGGGCGTTTGGGGAGGGGGGGGGGGTCAGTGGTCTGTGTAGTAGGTATGC
CGTGTGAATTTTCTTGTCGGCGCTATTTATCTTTAGAAATATATACCTTT
AGAGAACATGAACAAACTCACAGAAAGCTACCCGTTTGAGATACAACCAC
GGCAGTCAAAAGGGATGTATTCGCCTAAGTCTTTTCAGGGAGTGGAGGGA
AACCGGCTCGACACTGGTCTTATTTTAGTGTTTGTTTAAGCCTGTACACT
GAAATATTCCAGTGATACCCCTTAGCGCTATTTTTCTTTAAGGGCGGAGG
GATTCCGACATGCACATGTTCTCACAACGACGGTGATACTGTTCTGTACG
TTTCTTTGAGGGTGGTGTACTATTTACGACAAGCTTCTCCTTGAGCTATT
TAGATCAACCGTGAGGTTTTGTGGTGGCTTGCATCGCAGGTGGTTGGTGG
TGTGAGTGCCATTCGTCGGCGTTGTAAACTTCAGAGAGGGGGTCTGTACA
AGCCAGTCTGCCAGCATTTGTATGTTTTCACAACGACGGTCGTAGTGTTC
GTGTTGTGTGTCTTGTCGTGTGTTCACGGTTGGACAACTATTCCGGACAT
TTCCACAAAGTCCACGCTGATCAGTCTGGTTCCGTGCCCTGACTGCGGCC
ATGCTCGATTCGTTGTTCTTTTATGCCTTCTATCGAAATTTCACCCATTT
TTTTTTGCTTCCTCCTCAAAGCCAGTCTTCAAACGTTTGTAAGTTTTCAC
GACGACGGTCACAGTGTTCGTGTTATGTTGCTTGTCGTGTGTTCACGGGT
GGACAATTTTCCCGGACATCTTCCACAGAGTCCTCGCTCTGTTCGGACTT
TTGGTTCGTTTCTTGTCGCTGATCTGTCTGTGCTCCGTCGCCCTGACTGC
GGCCGTGCTCGATTCATTGTTCTTTGTACGTATGCTATCAAAGTTTCATT
TTTTTTTTTTCGTTTCTTTCTCCCCGCGCCAATAATAGTTTTTGTTTTTC
TCCTTTGTTTTTGTATTTGATGCCTCCGTGTAACCACTCCCCACCCCCGC
GGGCCCATTCTCGTTTTGTTAAGGTGGTGATCCTGATGGCGATGGGGTAC
TACCAAGTGCGACACCTCAAGAGTTTCTTCAAGTCCAAGCAGCTCGTCTA
GCCCATTAAAAGTCGTTCTACACTGCTATCATAGCCAAATGCCGTGCATG
CACGAAGTCAAGCATTGCGCCGCCATAAAAGCAGGACAAGAGTCGCAGGG
TTAACGTGCAGCACGAGAGGCCCGCGAAAAAACAAGGCTTTAAAGTGAGA
TTGACGAAATCCGATGGTATTTTTTTTCAACATGTATCATACAACGGAGG
GAGAGAGAGAGAGAGAGTAAGGTGTATCAGCATCACACGAGCTTGCAAAA
ATGTTGCTGGTCTACAGATAGGGCCGCATTTTGAAGAACCTCTTCTTTTG
GCCGAAGCTCGTTTCTTGTGTTGTCTATGGGGTACCCACCCCCACGGCGA
CGATTTGGTTTTGGTGTCGGCTTGTTGACTGAGGAGCGCCTGTTTTTATG
TTCTCACGGCAAGTTCTGATCGGCACGTGTGATAGATGACGTCATCAGGT
GATAGATGACGATACACAAACGACAAGGCTCAAGTCCTTAACTTTCAAGT
CCTCGAGTGGGGCCGGTTCTTCTGCATCGACTGTTTTTTCCGTTGAGATG
TTACCGCTGGGTGCTGGGCGTGAAATTCTTGACCGCCAGATATGTAGCAG
TCGGTAAAGTCCCTGCACCATAAGCGCCGTCCTCCGGGGGTTGGTAATAG
CCCGGTAGATAGTCGTAGCGTTGGTCGTGCAAGAGCAGGTCGGATGTGTT
CCTGGAAATGGTGCCTGCTCATGTGGGCTCGAACCGAACTGGATAAGACA
AGGATTAGGAAAAATACAAAAAAATAAACACGGAAAAATACTCGTTCGAG
ATATAACCACAGTAGTCGAAGGGGGTGTGTTGACGTCTTTGCAGTGAGTG
GAGGGACGCGGAACAAAAAGGGCGGAGGCACCAAAATAAAGTTTTTTTTG
CAAGTTTTTTTTGCACCGTCGCTCCTCTCAGTGTTCTGGCTTCCGTGGGC
ACGATCTCGCTTCTCTTCATGATGAACCCAAGCTTTTGTCAAAACCGTTG
CTCGGCGGTGCATTTCATTTCTGTAACGTAGGTGACGTTAGACAGCATCC
CCCCTCTGGGACCCCGATTCAAAGTTGGGATTGCTCTCCACAGCATAAAG
ACCGGCAGCGTTGAAGCCATCTTCGTCGAGAGCTTTCCGAAAACGTATCG
TTTCATGTGTGCATCATCTTCTTCGTGGAGTAATCGAGCTTTGAAATCGG
CCTTGGGGGTGTGGTTTCTTGTGTCACATACCGTACTTAAGGGCGCGTTG
GCAGCGCTACTTCACGACTTGCAACTCGTCGATGAGTTCCTGCTTCCTGG
TGTATCGAAAACCATTTTTTTTCGACTGTGAGGGTGTCTCAGCCCGTACG
CATTAATTCCACCTTTCGTTCCATACTCATATGCAACTCTTCGACGAGTT
TCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16154:450..3555+

>mRNA_Ecto-sp13_S_contig16154.4485.1 ID=mRNA_Ecto-sp13_S_contig16154.4485.1|Name=mRNA_Ecto-sp13_S_contig16154.4485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16154:450..3555+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCGCGAGGCGGACCTGTCGAAGGAGTCGGAGATGGAGTACCACAA
GCTTCTCCTGCAGCTCAACCACGAGGTCTTGTGGTGGCCTGTATCGCAGG
TGGTGATCCTGATGGCGATGGGGTACTACCAAGTGCGACACCTCAAGAGT
TTCTTCAAGTCCAAGCAGCTCGTCTAG
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